CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 216 | R216H | R7014H | nonsyn | cGc | cAc | 3165 | 3127 | 0.987994 | 21304-21306 |
ORF1ab/nsp16 | 216 | R216H | R7014H | nonsyn | cGC | cAT | 3165 | 38 | 0.0120063 | 21304-21306 |
Details of the mutation R216H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3127 | 3165 | All | 0.000598 |
ORF1ab/nsp16 | 216 | R216H | cGC | cAT | 38 | 3165 | All | 0.000007 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 605 | 640 | AY.4 | 0.000942 |
ORF1ab/nsp16 | 216 | R216H | cGC | cAT | 35 | 640 | AY.4 | 0.000054 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 357 | 357 | B.1.1.7 | 0.00032 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 297 | 297 | P.6 | 0.933962 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 245 | 245 | B.1.567 | 0.816667 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 179 | 180 | B.1.617.2 | 0.000674 |
ORF1ab/nsp16 | 216 | R216H | cGC | cAT | 1 | 180 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 155 | 155 | B.1.1.214 | 0.008596 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 153 | 153 | B.1.429 | 0.0036 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 91 | 91 | AY.45 | 0.011073 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 89 | 89 | R.1 | 0.008011 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 68 | 68 | AY.3.1 | 0.005798 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 64 | 64 | AY.5 | 0.001322 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 59 | 59 | AY.103 | 0.000366 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 54 | 54 | AY.44 | 0.000329 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 47 | 47 | B.1 | 0.00043 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 45 | 45 | AY.29 | 0.00071 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 37 | 37 | AY.46.3 | 0.034547 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 35 | 35 | AY.3 | 0.000348 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 35 | 35 | B.1.177 | 0.000461 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 29 | 29 | AY.46.6 | 0.002094 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 22 | 22 | B.1.258.17 | 0.002287 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 21 | 21 | AY.25 | 0.000126 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 18 | 18 | AY.89 | 0.088235 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 18 | 18 | B.1.1.28 | 0.005602 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 14 | 14 | B.1.1 | 0.000254 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 13 | 13 | B.1.311 | 0.003569 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 11 | 11 | AY.75 | 0.000616 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 10 | 10 | B.1.409 | 0.007812 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 9 | 9 | B.1.471 | 0.02459 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 8 | 8 | B.1.1.417 | 0.021622 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 7 | 7 | B.1.1.50 | 0.004752 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 6 | 6 | AZ.2 | 0.004926 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 6 | 6 | B.1.1.284 | 0.000644 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 5 | 6 | B.1.258 | 0.000333 |
ORF1ab/nsp16 | 216 | R216H | cGC | cAT | 1 | 6 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 5 | 5 | B.1.1.174 | 0.016892 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 5 | 5 | B.1.1.189 | 0.007564 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 5 | 5 | B.1.346 | 0.006553 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 4 | 4 | B.1.428 | 0.004082 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | B.1.1.241 | 0.006211 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 3 | 3 | Q.2 | 0.00184 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | B.46 | 0.041667 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AA.8 | 0.022222 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.111 | 0.014706 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.384 | 0.02381 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp16 | 216 | R216H | cGC | cAT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp16 | 216 | R216H | cGc | cAc | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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