CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = P62P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1662P62PP6860PsynccCccT10212100460.98374520842-20844
ORF1ab/nsp1662P62PP6860PsynccCccA102121460.014296920842-20844
ORF1ab/nsp1662P62PP6860PsynccCccG10212200.0019584820842-20844

Details of the mutation P62P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1662P62PccCccT1004610212All0.001921
ORF1ab/nsp1662P62PccCccA14610212All0.000028
ORF1ab/nsp1662P62PccCccG2010212All0.000004
ORF1ab/nsp1662P62PccCccT25972603AY.430.011506
ORF1ab/nsp1662P62PccCccA62603AY.430.000027
ORF1ab/nsp1662P62PccCccT18781885AY.40.002923
ORF1ab/nsp1662P62PccCccA71885AY.40.000011
ORF1ab/nsp1662P62PccCccT14571532B.1.1.70.001304
ORF1ab/nsp1662P62PccCccA651532B.1.1.70.000058
ORF1ab/nsp1662P62PccCccG101532B.1.1.70.000009
ORF1ab/nsp1662P62PccCccT521521AY.30.005182
ORF1ab/nsp1662P62PccCccT314314AY.1030.00195
ORF1ab/nsp1662P62PccCccT283288B.1.617.20.001066
ORF1ab/nsp1662P62PccCccA5288B.1.617.20.000019
ORF1ab/nsp1662P62PccCccT257278B.1.20.002263
ORF1ab/nsp1662P62PccCccA21278B.1.20.000185
ORF1ab/nsp1662P62PccCccT170170B.1.1.2720.885417
ORF1ab/nsp1662P62PccCccT131133P.10.002064
ORF1ab/nsp1662P62PccCccA1133P.10.000016
ORF1ab/nsp1662P62PccCccG1133P.10.000016
ORF1ab/nsp1662P62PccCccT132132AY.50.002726
ORF1ab/nsp1662P62PccCccT125129AY.440.000761
ORF1ab/nsp1662P62PccCccA4129AY.440.000024
ORF1ab/nsp1662P62PccCccT124124B.1.1.2140.006877
ORF1ab/nsp1662P62PccCccT110112AY.250.000662
ORF1ab/nsp1662P62PccCccA2112AY.250.000012
ORF1ab/nsp1662P62PccCccT105110AY.200.004081
ORF1ab/nsp1662P62PccCccA5110AY.200.000194
ORF1ab/nsp1662P62PccCccT97104B.10.000888
ORF1ab/nsp1662P62PccCccA7104B.10.000064
ORF1ab/nsp1662P62PccCccT102102AY.99.20.0094
ORF1ab/nsp1662P62PccCccT9696AY.140.008449
ORF1ab/nsp1662P62PccCccT6969B.1.36.290.035696
ORF1ab/nsp1662P62PccCccT5657AY.1020.001485
ORF1ab/nsp1662P62PccCccA157AY.1020.000027
ORF1ab/nsp1662P62PccCccT5656B.1.10.001016
ORF1ab/nsp1662P62PccCccT5656B.1.1770.000737
ORF1ab/nsp1662P62PccCccT5353AY.3.10.004519
ORF1ab/nsp1662P62PccCccT5353AY.320.028222
ORF1ab/nsp1662P62PccCccT4848B.1.360.007003
ORF1ab/nsp1662P62PccCccT4343AY.4.20.000933
ORF1ab/nsp1662P62PccCccT4141Q.70.045556
ORF1ab/nsp1662P62PccCccT3536AY.390.000865
ORF1ab/nsp1662P62PccCccA136AY.390.000025
ORF1ab/nsp1662P62PccCccT3232B.1.2210.002273
ORF1ab/nsp1662P62PccCccT3131AU.20.075061
ORF1ab/nsp1662P62PccCccT3131B.1.1.5190.001231
ORF1ab/nsp1662P62PccCccT2828AY.420.001126
ORF1ab/nsp1662P62PccCccT2627AY.60.001069
ORF1ab/nsp1662P62PccCccA127AY.60.000041
ORF1ab/nsp1662P62PccCccT2525B.1.1.1001
ORF1ab/nsp1662P62PccCccT2424AY.330.001603
ORF1ab/nsp1662P62PccCccT2323AY.46.60.001661
ORF1ab/nsp1662P62PccCccT2323B.1.3510.000684
ORF1ab/nsp1662P62PccCccT2121B.1.1.470.112299
ORF1ab/nsp1662P62PccCccT2021B.1.5260.00047
ORF1ab/nsp1662P62PccCccA121B.1.5260.000024
ORF1ab/nsp1662P62PccCccT2020P.1.10.006353
ORF1ab/nsp1662P62PccCccT1919AY.260.000538
ORF1ab/nsp1662P62PccCccT1818B.1.1600.000561
ORF1ab/nsp1662P62PccCccT1718B.1.4290.0004
ORF1ab/nsp1662P62PccCccA118B.1.4290.000024
ORF1ab/nsp1662P62PccCccT1717AY.290.000268
ORF1ab/nsp1662P62PccCccT1616AY.9.10.00134
ORF1ab/nsp1662P62PccCccT1414B.1.120.112
ORF1ab/nsp1662P62PccCccT1414P.1.140.000669
ORF1ab/nsp1662P62PccCccT1313AY.460.001353
ORF1ab/nsp1662P62PccCccT1313B.1.177.860.002385
ORF1ab/nsp1662P62PccCccG813B.1.5250.000905
ORF1ab/nsp1662P62PccCccT513B.1.5250.000566
ORF1ab/nsp1662P62PccCccT1313B.1.5950.003392
ORF1ab/nsp1662P62PccCccT1212AY.9.20.000441
ORF1ab/nsp1662P62PccCccT1112B.1.6360.073826
ORF1ab/nsp1662P62PccCccG112B.1.6360.006711
ORF1ab/nsp1662P62PccCccT1111AY.1190.000388
ORF1ab/nsp1662P62PccCccT1111B.1.177.730.006229
ORF1ab/nsp1662P62PccCccT1010AY.270.000647
ORF1ab/nsp1662P62PccCccT1010AY.360.001482
ORF1ab/nsp1662P62PccCccT1010AY.990.010493
ORF1ab/nsp1662P62PccCccT1010B.1.177.210.000765
ORF1ab/nsp1662P62PccCccT99AY.750.000504
ORF1ab/nsp1662P62PccCccT99AY.98.10.000436
ORF1ab/nsp1662P62PccCccT99B.1.258.30.015075
ORF1ab/nsp1662P62PccCccT99P.1.130.008086
ORF1ab/nsp1662P62PccCccT88A.2.50.003992
ORF1ab/nsp1662P62PccCccT88AU.10.010127
ORF1ab/nsp1662P62PccCccT88AY.230.000558
ORF1ab/nsp1662P62PccCccT78B.1.2430.000487
ORF1ab/nsp1662P62PccCccA18B.1.2430.00007
ORF1ab/nsp1662P62PccCccT88B.1.3490.005718
ORF1ab/nsp1662P62PccCccT88B.1.4560.026144
ORF1ab/nsp1662P62PccCccT77AY.1000.000322
ORF1ab/nsp1662P62PccCccT77AY.1080.007718
ORF1ab/nsp1662P62PccCccT67AY.1200.000223
ORF1ab/nsp1662P62PccCccA17AY.1200.000037
ORF1ab/nsp1662P62PccCccT77AY.370.002212
ORF1ab/nsp1662P62PccCccT77B.1.621.10.003541
ORF1ab/nsp1662P62PccCccT77B.1.6280.002467
ORF1ab/nsp1662P62PccCccT77C.370.000812
ORF1ab/nsp1662P62PccCccT66B.1.2340.000792
ORF1ab/nsp1662P62PccCccT66B.1.2400.001293
ORF1ab/nsp1662P62PccCccT66B.1.3200.007472
ORF1ab/nsp1662P62PccCccT66B.1.3960.004234
ORF1ab/nsp1662P62PccCccT55AY.1170.000423
ORF1ab/nsp1662P62PccCccT55AY.340.000485
ORF1ab/nsp1662P62PccCccT55AY.4.40.002046
ORF1ab/nsp1662P62PccCccT55AY.450.000608
ORF1ab/nsp1662P62PccCccT45AY.470.000124
ORF1ab/nsp1662P62PccCccA15AY.470.000031
ORF1ab/nsp1662P62PccCccT55AY.700.001043
ORF1ab/nsp1662P62PccCccT55B.1.1.280.001556
ORF1ab/nsp1662P62PccCccT55B.1.1470.003779
ORF1ab/nsp1662P62PccCccT55B.1.3020.066667
ORF1ab/nsp1662P62PccCccT55B.1.3110.001373
ORF1ab/nsp1662P62PccCccT55B.1.5960.000436
ORF1ab/nsp1662P62PccCccT55B.1.6210.000443
ORF1ab/nsp1662P62PccCccT55Q.30.000725
ORF1ab/nsp1662P62PccCccT44AY.120.001264
ORF1ab/nsp1662P62PccCccT44AY.29.10.000882
ORF1ab/nsp1662P62PccCccT44AY.380.001997
ORF1ab/nsp1662P62PccCccT44AY.530.00115
ORF1ab/nsp1662P62PccCccT44AY.610.000419
ORF1ab/nsp1662P62PccCccT44AY.90.00027
ORF1ab/nsp1662P62PccCccT44AY.980.000316
ORF1ab/nsp1662P62PccCccT34B0.000383
ORF1ab/nsp1662P62PccCccA14B0.000128
ORF1ab/nsp1662P62PccCccT44B.1.1.3110.001433
ORF1ab/nsp1662P62PccCccT44B.1.1.630.001543
ORF1ab/nsp1662P62PccCccT44B.1.2580.000266
ORF1ab/nsp1662P62PccCccT44B.1.3560.006908
ORF1ab/nsp1662P62PccCccT44B.1.4160.005076
ORF1ab/nsp1662P62PccCccT44B.1.4270.000202
ORF1ab/nsp1662P62PccCccA34B.1.5170.001281
ORF1ab/nsp1662P62PccCccT14B.1.5170.000427
ORF1ab/nsp1662P62PccCccT34P.1.150.000697
ORF1ab/nsp1662P62PccCccA14P.1.150.000232
ORF1ab/nsp1662P62PccCccT44P.1.70.001277
ORF1ab/nsp1662P62PccCccT33AY.300.001187
ORF1ab/nsp1662P62PccCccT33AY.5.30.001012
ORF1ab/nsp1662P62PccCccT23AY.520.001629
ORF1ab/nsp1662P62PccCccA13AY.520.000814
ORF1ab/nsp1662P62PccCccT33AY.650.001599
ORF1ab/nsp1662P62PccCccT33B.1.1.2160.002671
ORF1ab/nsp1662P62PccCccT33B.1.1.2190.015
ORF1ab/nsp1662P62PccCccT33B.1.36.360.001806
ORF1ab/nsp1662P62PccCccT33B.1.4130.012766
ORF1ab/nsp1662P62PccCccT33B.1.466.20.001174
ORF1ab/nsp1662P62PccCccT33B.1.5670.01
ORF1ab/nsp1662P62PccCccT33B.1.6090.001438
ORF1ab/nsp1662P62PccCccT33B.1.619.10.001924
ORF1ab/nsp1662P62PccCccT33C.280.12
ORF1ab/nsp1662P62PccCccT33D.20.000225
ORF1ab/nsp1662P62PccCccT33P.1.120.001452
ORF1ab/nsp1662P62PccCccT22AY.1060.00067
ORF1ab/nsp1662P62PccCccT22AY.1140.000462
ORF1ab/nsp1662P62PccCccT22AY.1160.000574
ORF1ab/nsp1662P62PccCccT22AY.39.10.000079
ORF1ab/nsp1662P62PccCccT22AY.4.2.10.000298
ORF1ab/nsp1662P62PccCccT22AY.480.00093
ORF1ab/nsp1662P62PccCccT22AY.640.00119
ORF1ab/nsp1662P62PccCccT22AY.740.000231
ORF1ab/nsp1662P62PccCccT22AY.850.000854
ORF1ab/nsp1662P62PccCccA22AY.91.10.00813
ORF1ab/nsp1662P62PccCccT22B.1.1.1920.004619
ORF1ab/nsp1662P62PccCccT22B.1.1.2690.002706
ORF1ab/nsp1662P62PccCccT22B.1.1.2980.001724
ORF1ab/nsp1662P62PccCccT22B.1.1.3060.000877
ORF1ab/nsp1662P62PccCccT22B.1.1.3170.000823
ORF1ab/nsp1662P62PccCccT22B.1.1.500.001358
ORF1ab/nsp1662P62PccCccT22B.1.177.150.001262
ORF1ab/nsp1662P62PccCccT22B.1.177.810.000379
ORF1ab/nsp1662P62PccCccT22B.1.177.820.000955
ORF1ab/nsp1662P62PccCccT22B.1.258.170.000208
ORF1ab/nsp1662P62PccCccT22B.1.258.60.039216
ORF1ab/nsp1662P62PccCccT22B.1.351.50.001199
ORF1ab/nsp1662P62PccCccT22B.1.36.160.002849
ORF1ab/nsp1662P62PccCccT22B.1.36.380.003284
ORF1ab/nsp1662P62PccCccT22B.1.3690.00057
ORF1ab/nsp1662P62PccCccT22B.1.4000.000858
ORF1ab/nsp1662P62PccCccT22B.1.4700.002809
ORF1ab/nsp1662P62PccCccT22B.1.4970.00063
ORF1ab/nsp1662P62PccCccT22B.1.5180.023529
ORF1ab/nsp1662P62PccCccT22B.1.617.10.000258
ORF1ab/nsp1662P62PccCccT22B.400.000729
ORF1ab/nsp1662P62PccCccT22P.1.170.000324
ORF1ab/nsp1662P62PccCccT22Q.80.00033
ORF1ab/nsp1662P62PccCccT110.055556
ORF1ab/nsp1662P62PccCccA11A0.000387
ORF1ab/nsp1662P62PccCccT11A.2.40.003367
ORF1ab/nsp1662P62PccCccT11A.2.5.10.004808
ORF1ab/nsp1662P62PccCccT11A.230.010526
ORF1ab/nsp1662P62PccCccT11A.30.002096
ORF1ab/nsp1662P62PccCccT11AD.20.000219
ORF1ab/nsp1662P62PccCccT11AY.1100.000113
ORF1ab/nsp1662P62PccCccT11AY.1130.000142
ORF1ab/nsp1662P62PccCccT11AY.1180.000063
ORF1ab/nsp1662P62PccCccT11AY.120.10.000321
ORF1ab/nsp1662P62PccCccT11AY.120.2.10.000498
ORF1ab/nsp1662P62PccCccT11AY.130.000161
ORF1ab/nsp1662P62PccCccT11AY.150.002222
ORF1ab/nsp1662P62PccCccA11AY.160.00038
ORF1ab/nsp1662P62PccCccT11AY.16.10.00047
ORF1ab/nsp1662P62PccCccT11AY.23.10.000417
ORF1ab/nsp1662P62PccCccT11AY.4.50.000107
ORF1ab/nsp1662P62PccCccT11AY.410.000294
ORF1ab/nsp1662P62PccCccA11AY.46.20.000635
ORF1ab/nsp1662P62PccCccT11AY.46.40.000165
ORF1ab/nsp1662P62PccCccT11AY.510.000909
ORF1ab/nsp1662P62PccCccT11AY.550.000917
ORF1ab/nsp1662P62PccCccT11AY.590.00053
ORF1ab/nsp1662P62PccCccT11AY.690.000187
ORF1ab/nsp1662P62PccCccT11AY.710.000475
ORF1ab/nsp1662P62PccCccT11AY.75.10.00018
ORF1ab/nsp1662P62PccCccT11AY.840.000437
ORF1ab/nsp1662P62PccCccT11AY.880.000884
ORF1ab/nsp1662P62PccCccT11AY.900.000684
ORF1ab/nsp1662P62PccCccA11AY.910.00073
ORF1ab/nsp1662P62PccCccT11AY.920.000287
ORF1ab/nsp1662P62PccCccT11AY.930.000273
ORF1ab/nsp1662P62PccCccT11AY.950.000761
ORF1ab/nsp1662P62PccCccT11AZ.10.000867
ORF1ab/nsp1662P62PccCccT11B.1.1.1410.002012
ORF1ab/nsp1662P62PccCccT11B.1.1.1530.001095
ORF1ab/nsp1662P62PccCccT11B.1.1.1640.005155
ORF1ab/nsp1662P62PccCccT11B.1.1.1700.001247
ORF1ab/nsp1662P62PccCccT11B.1.1.2220.000204
ORF1ab/nsp1662P62PccCccT11B.1.1.2410.00207
ORF1ab/nsp1662P62PccCccT11B.1.1.2650.003155
ORF1ab/nsp1662P62PccCccT11B.1.1.2970.002237
ORF1ab/nsp1662P62PccCccT11B.1.1.3030.002762
ORF1ab/nsp1662P62PccCccT11B.1.1.3070.002532
ORF1ab/nsp1662P62PccCccT11B.1.1.3160.000925
ORF1ab/nsp1662P62PccCccT11B.1.1.330.000421
ORF1ab/nsp1662P62PccCccT11B.1.1.3540.004386
ORF1ab/nsp1662P62PccCccT11B.1.1.3680.003086
ORF1ab/nsp1662P62PccCccT11B.1.1.370.000193
ORF1ab/nsp1662P62PccCccA11B.1.1.390.00051
ORF1ab/nsp1662P62PccCccA11B.1.1.4040.015873
ORF1ab/nsp1662P62PccCccT11B.1.1.4200.001006
ORF1ab/nsp1662P62PccCccT11B.1.1.4320.001266
ORF1ab/nsp1662P62PccCccT11B.1.1.4470.035714
ORF1ab/nsp1662P62PccCccT11B.1.1.4640.001473
ORF1ab/nsp1662P62PccCccT11B.1.1.5180.006329
ORF1ab/nsp1662P62PccCccT11B.1.1.700.000341
ORF1ab/nsp1662P62PccCccT11B.1.1080.005814
ORF1ab/nsp1662P62PccCccT11B.1.1110.001175
ORF1ab/nsp1662P62PccCccT11B.1.1390.000733
ORF1ab/nsp1662P62PccCccT11B.1.160.140.002119
ORF1ab/nsp1662P62PccCccT11B.1.160.150.00495
ORF1ab/nsp1662P62PccCccT11B.1.160.190.035714
ORF1ab/nsp1662P62PccCccT11B.1.177.120.000152
ORF1ab/nsp1662P62PccCccT11B.1.177.190.001431
ORF1ab/nsp1662P62PccCccA11B.1.177.230.003236
ORF1ab/nsp1662P62PccCccT11B.1.177.40.000211
ORF1ab/nsp1662P62PccCccT11B.1.177.580.001332
ORF1ab/nsp1662P62PccCccT11B.1.177.620.001192
ORF1ab/nsp1662P62PccCccT11B.1.177.650.000665
ORF1ab/nsp1662P62PccCccT11B.1.177.770.000726
ORF1ab/nsp1662P62PccCccT11B.1.2320.000537
ORF1ab/nsp1662P62PccCccT11B.1.2600.003344
ORF1ab/nsp1662P62PccCccT11B.1.2700.005618
ORF1ab/nsp1662P62PccCccT11B.1.36.180.00042
ORF1ab/nsp1662P62PccCccT11B.1.36.20.010753
ORF1ab/nsp1662P62PccCccT11B.1.36.80.001
ORF1ab/nsp1662P62PccCccT11B.1.3670.000792
ORF1ab/nsp1662P62PccCccT11B.1.3810.007812
ORF1ab/nsp1662P62PccCccT11B.1.416.10.001563
ORF1ab/nsp1662P62PccCccT11B.1.4250.002994
ORF1ab/nsp1662P62PccCccT11B.1.4320.011236
ORF1ab/nsp1662P62PccCccT11B.1.438.10.000107
ORF1ab/nsp1662P62PccCccT11B.1.4500.011364
ORF1ab/nsp1662P62PccCccT11B.1.4990.00105
ORF1ab/nsp1662P62PccCccT11B.1.5550.022222
ORF1ab/nsp1662P62PccCccT11B.1.5590.025
ORF1ab/nsp1662P62PccCccT11B.1.5610.000397
ORF1ab/nsp1662P62PccCccT11B.1.5640.000426
ORF1ab/nsp1662P62PccCccT11B.1.5820.000491
ORF1ab/nsp1662P62PccCccT11B.1.5900.004545
ORF1ab/nsp1662P62PccCccT11B.1.617.30.002985
ORF1ab/nsp1662P62PccCccT11B.1.6300.005236
ORF1ab/nsp1662P62PccCccT11B.1.6340.003425
ORF1ab/nsp1662P62PccCccT11B.1.6390.021739
ORF1ab/nsp1662P62PccCccT11B.6.60.000889
ORF1ab/nsp1662P62PccCccT11B.600.015873
ORF1ab/nsp1662P62PccCccT11C.120.007194
ORF1ab/nsp1662P62PccCccT11C.180.002591
ORF1ab/nsp1662P62PccCccT11C.350.000774
ORF1ab/nsp1662P62PccCccT11C.36.30.000567
ORF1ab/nsp1662P62PccCccT11N.50.001767
ORF1ab/nsp1662P62PccCccT11P.20.000187
ORF1ab/nsp1662P62PccCccT11Q.40.000455
ORF1ab/nsp1662P62PccCccT11R.10.00009