CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 62 | P62P | P6860P | syn | ccC | ccT | 10212 | 10046 | 0.983745 | 20842-20844 |
ORF1ab/nsp16 | 62 | P62P | P6860P | syn | ccC | ccA | 10212 | 146 | 0.0142969 | 20842-20844 |
ORF1ab/nsp16 | 62 | P62P | P6860P | syn | ccC | ccG | 10212 | 20 | 0.00195848 | 20842-20844 |
Details of the mutation P62P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 10046 | 10212 | All | 0.001921 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 146 | 10212 | All | 0.000028 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccG | 20 | 10212 | All | 0.000004 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2597 | 2603 | AY.43 | 0.011506 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 6 | 2603 | AY.43 | 0.000027 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1878 | 1885 | AY.4 | 0.002923 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 7 | 1885 | AY.4 | 0.000011 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1457 | 1532 | B.1.1.7 | 0.001304 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 65 | 1532 | B.1.1.7 | 0.000058 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccG | 10 | 1532 | B.1.1.7 | 0.000009 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 521 | 521 | AY.3 | 0.005182 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 314 | 314 | AY.103 | 0.00195 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 283 | 288 | B.1.617.2 | 0.001066 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 5 | 288 | B.1.617.2 | 0.000019 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 257 | 278 | B.1.2 | 0.002263 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 21 | 278 | B.1.2 | 0.000185 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 170 | 170 | B.1.1.272 | 0.885417 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 131 | 133 | P.1 | 0.002064 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 133 | P.1 | 0.000016 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccG | 1 | 133 | P.1 | 0.000016 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 132 | 132 | AY.5 | 0.002726 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 125 | 129 | AY.44 | 0.000761 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 4 | 129 | AY.44 | 0.000024 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 124 | 124 | B.1.1.214 | 0.006877 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 110 | 112 | AY.25 | 0.000662 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 2 | 112 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 105 | 110 | AY.20 | 0.004081 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 5 | 110 | AY.20 | 0.000194 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 97 | 104 | B.1 | 0.000888 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 7 | 104 | B.1 | 0.000064 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 102 | 102 | AY.99.2 | 0.0094 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 96 | 96 | AY.14 | 0.008449 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 69 | 69 | B.1.36.29 | 0.035696 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 56 | 57 | AY.102 | 0.001485 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 57 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 56 | 56 | B.1.1 | 0.001016 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 56 | 56 | B.1.177 | 0.000737 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 53 | 53 | AY.3.1 | 0.004519 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 53 | 53 | AY.32 | 0.028222 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 48 | 48 | B.1.36 | 0.007003 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 43 | 43 | AY.4.2 | 0.000933 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 41 | 41 | Q.7 | 0.045556 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 35 | 36 | AY.39 | 0.000865 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 36 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 32 | 32 | B.1.221 | 0.002273 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 31 | 31 | AU.2 | 0.075061 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 31 | 31 | B.1.1.519 | 0.001231 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 28 | 28 | AY.42 | 0.001126 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 26 | 27 | AY.6 | 0.001069 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 27 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 25 | 25 | B.1.1.100 | 1 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 24 | 24 | AY.33 | 0.001603 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 23 | 23 | AY.46.6 | 0.001661 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 23 | 23 | B.1.351 | 0.000684 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 21 | 21 | B.1.1.47 | 0.112299 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 20 | 21 | B.1.526 | 0.00047 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 21 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 20 | 20 | P.1.1 | 0.006353 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 19 | 19 | AY.26 | 0.000538 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 18 | 18 | B.1.160 | 0.000561 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 17 | 18 | B.1.429 | 0.0004 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 18 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 17 | 17 | AY.29 | 0.000268 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 16 | 16 | AY.9.1 | 0.00134 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 14 | 14 | B.1.12 | 0.112 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 14 | 14 | P.1.14 | 0.000669 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 13 | 13 | AY.46 | 0.001353 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 13 | 13 | B.1.177.86 | 0.002385 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccG | 8 | 13 | B.1.525 | 0.000905 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 13 | B.1.525 | 0.000566 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 13 | 13 | B.1.595 | 0.003392 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 12 | 12 | AY.9.2 | 0.000441 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 11 | 12 | B.1.636 | 0.073826 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccG | 1 | 12 | B.1.636 | 0.006711 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 11 | 11 | B.1.177.73 | 0.006229 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 10 | 10 | AY.36 | 0.001482 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 10 | 10 | AY.99 | 0.010493 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 10 | 10 | B.1.177.21 | 0.000765 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 9 | 9 | B.1.258.3 | 0.015075 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 9 | 9 | P.1.13 | 0.008086 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 8 | 8 | A.2.5 | 0.003992 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 8 | 8 | AU.1 | 0.010127 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 7 | 8 | B.1.243 | 0.000487 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 8 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 8 | 8 | B.1.349 | 0.005718 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 8 | 8 | B.1.456 | 0.026144 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 7 | 7 | AY.108 | 0.007718 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 6 | 7 | AY.120 | 0.000223 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 7 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 7 | 7 | AY.37 | 0.002212 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 7 | 7 | B.1.621.1 | 0.003541 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 6 | 6 | B.1.320 | 0.007472 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 6 | 6 | B.1.396 | 0.004234 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | AY.4.4 | 0.002046 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 5 | AY.47 | 0.000124 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 5 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | AY.70 | 0.001043 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | B.1.147 | 0.003779 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | B.1.302 | 0.066667 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 5 | 5 | Q.3 | 0.000725 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 4 | B | 0.000383 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 4 | B | 0.000128 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | B.1.1.311 | 0.001433 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | B.1.356 | 0.006908 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | B.1.416 | 0.005076 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 3 | 4 | B.1.517 | 0.001281 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 4 | B.1.517 | 0.000427 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 4 | P.1.15 | 0.000697 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 4 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 3 | AY.52 | 0.001629 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 3 | AY.52 | 0.000814 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | AY.65 | 0.001599 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | B.1.1.219 | 0.015 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | B.1.36.36 | 0.001806 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | B.1.413 | 0.012766 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | B.1.567 | 0.01 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | B.1.619.1 | 0.001924 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | C.28 | 0.12 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 2 | 2 | AY.91.1 | 0.00813 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.258.6 | 0.039216 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.518 | 0.023529 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.447 | 0.035714 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.160.19 | 0.035714 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccA | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.36.2 | 0.010753 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.450 | 0.011364 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.555 | 0.022222 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.559 | 0.025 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.1.639 | 0.021739 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | C.12 | 0.007194 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp16 | 62 | P62P | ccC | ccT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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