CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = N55S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1655N55SN6853SnonsynaAcaGc2192170.99086820821-20823
ORF1ab/nsp1655N55SN6853SnonsynaACaGT21910.0045662120821-20823
ORF1ab/nsp1655N55SN6853SnonsynAACTCT21910.0045662120821-20823

Details of the mutation N55S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1655N55SaAcaGc217219All0.000042
ORF1ab/nsp1655N55SAACTCT1219All0
ORF1ab/nsp1655N55SaACaGT1219All0
ORF1ab/nsp1655N55SaAcaGc4343B.1.1.2140.002385
ORF1ab/nsp1655N55SaAcaGc3434B.1.617.20.000128
ORF1ab/nsp1655N55SaAcaGc2929AY.430.000128
ORF1ab/nsp1655N55SaAcaGc1919B.1.1.70.000017
ORF1ab/nsp1655N55SaAcaGc1414B.1.1770.000184
ORF1ab/nsp1655N55SaAcaGc1212B.1.6180.048387
ORF1ab/nsp1655N55SaAcaGc1010AY.440.000061
ORF1ab/nsp1655N55SaAcaGc88P.10.000126
ORF1ab/nsp1655N55SaAcaGc77AY.40.000011
ORF1ab/nsp1655N55SaAcaGc44AY.1020.000106
ORF1ab/nsp1655N55SaAcaGc44AY.1140.000924
ORF1ab/nsp1655N55SaAcaGc33B.10.000027
ORF1ab/nsp1655N55SaAcaGc33B.1.360.000438
ORF1ab/nsp1655N55SaACaGT120.055556
ORF1ab/nsp1655N55SaAcaGc120.055556
ORF1ab/nsp1655N55SaAcaGc22AY.490.00639
ORF1ab/nsp1655N55SaAcaGc12B.1.10.000018
ORF1ab/nsp1655N55SAACTCT12B.1.10.000018
ORF1ab/nsp1655N55SaAcaGc22B.1.20.000018
ORF1ab/nsp1655N55SaAcaGc22B.1.258.140.001961
ORF1ab/nsp1655N55SaAcaGc22B.1.3510.000059
ORF1ab/nsp1655N55SaAcaGc11AY.1030.000006
ORF1ab/nsp1655N55SaAcaGc11AY.1170.000085
ORF1ab/nsp1655N55SaAcaGc11AY.120.10.000321
ORF1ab/nsp1655N55SaAcaGc11AY.390.000025
ORF1ab/nsp1655N55SaAcaGc11AY.4.20.000022
ORF1ab/nsp1655N55SaAcaGc11AY.70.000196
ORF1ab/nsp1655N55SaAcaGc11B.1.1.2880.001916
ORF1ab/nsp1655N55SaAcaGc11B.1.1.3170.000412
ORF1ab/nsp1655N55SaAcaGc11B.1.1.3770.001381
ORF1ab/nsp1655N55SaAcaGc11B.1.1.5190.00004
ORF1ab/nsp1655N55SaAcaGc11B.1.177.60.000977
ORF1ab/nsp1655N55SaAcaGc11B.1.2180.005155
ORF1ab/nsp1655N55SaAcaGc11B.1.4290.000024
ORF1ab/nsp1655N55SaAcaGc11B.1.5950.000261
ORF1ab/nsp1655N55SaAcaGc11B.1.6210.000089
ORF1ab/nsp1655N55SaAcaGc11C.370.000116
ORF1ab/nsp1655N55SaAcaGc11P.1.10.000318

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.