CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = L22L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1622L22LL6820LsynttAttG941092850.98671620722-20724
ORF1ab/nsp1622L22LL6820LsynTtaCta94101240.013177520722-20724
ORF1ab/nsp1622L22LL6820LsynTtACtG941010.0001062720722-20724

Details of the mutation L22L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1622L22LttAttG92859410All0.001776
ORF1ab/nsp1622L22LTtaCta1249410All0.000024
ORF1ab/nsp1622L22LTtACtG19410All0
ORF1ab/nsp1622L22LttAttG86938693B.1.5250.983705
ORF1ab/nsp1622L22LttAttG200201B.10.001832
ORF1ab/nsp1622L22LTtaCta1201B.10.000009
ORF1ab/nsp1622L22LttAttG151162B.1.1.70.000135
ORF1ab/nsp1622L22LTtaCta11162B.1.1.70.00001
ORF1ab/nsp1622L22LttAttG136137B.1.10.002467
ORF1ab/nsp1622L22LTtaCta1137B.1.10.000018
ORF1ab/nsp1622L22LTtaCta2649B.1.617.20.000098
ORF1ab/nsp1622L22LttAttG2349B.1.617.20.000087
ORF1ab/nsp1622L22LTtaCta2626AY.1050.01672
ORF1ab/nsp1622L22LttAttG1019AY.1030.000062
ORF1ab/nsp1622L22LTtaCta919AY.1030.000056
ORF1ab/nsp1622L22LttAttG1414AY.440.000085
ORF1ab/nsp1622L22LTtaCta1313B.1.4270.000656
ORF1ab/nsp1622L22LTtaCta77AY.250.000042
ORF1ab/nsp1622L22LttAttG66B.1.20.000053
ORF1ab/nsp1622L22LttAttG35AY.40.000005
ORF1ab/nsp1622L22LTtaCta25AY.40.000003
ORF1ab/nsp1622L22LttAttG34AY.30.00003
ORF1ab/nsp1622L22LTtaCta14AY.30.00001
ORF1ab/nsp1622L22LTtaCta33AY.1020.00008
ORF1ab/nsp1622L22LttAttG33AY.200.000117
ORF1ab/nsp1622L22LTtaCta23AY.430.000009
ORF1ab/nsp1622L22LttAttG13AY.430.000004
ORF1ab/nsp1622L22LttAttG33B0.000383
ORF1ab/nsp1622L22LttAttG33B.1.1.3180.000905
ORF1ab/nsp1622L22LttAttG33B.1.1600.000094
ORF1ab/nsp1622L22LttAttG23B.1.1770.000026
ORF1ab/nsp1622L22LTtaCta13B.1.1770.000013
ORF1ab/nsp1622L22LTtaCta23B.1.3510.000059
ORF1ab/nsp1622L22LttAttG13B.1.3510.00003
ORF1ab/nsp1622L22LTtACtG13B.1.4160.001269
ORF1ab/nsp1622L22LttAttG13B.1.4160.001269
ORF1ab/nsp1622L22LTtaCta13B.1.4160.001269
ORF1ab/nsp1622L22LttAttG33B.1.4590.012245
ORF1ab/nsp1622L22LttAttG12AY.75.10.00018
ORF1ab/nsp1622L22LTtaCta12AY.75.10.00018
ORF1ab/nsp1622L22LTtaCta22AY.90.000135
ORF1ab/nsp1622L22LttAttG12AY.980.000079
ORF1ab/nsp1622L22LTtaCta12AY.980.000079
ORF1ab/nsp1622L22LttAttG22B.1.177.550.004662
ORF1ab/nsp1622L22LTtaCta12B.1.2580.000067
ORF1ab/nsp1622L22LttAttG12B.1.2580.000067
ORF1ab/nsp1622L22LttAttG12B.1.3110.000275
ORF1ab/nsp1622L22LTtaCta12B.1.3110.000275
ORF1ab/nsp1622L22LttAttG22B.1.5670.006667
ORF1ab/nsp1622L22LttAttG12P.10.000016
ORF1ab/nsp1622L22LTtaCta12P.10.000016
ORF1ab/nsp1622L22LttAttG110.055556
ORF1ab/nsp1622L22LttAttG11AY.1000.000046
ORF1ab/nsp1622L22LTtaCta11AY.1100.000113
ORF1ab/nsp1622L22LttAttG11AY.1110.000183
ORF1ab/nsp1622L22LttAttG11AY.290.000016
ORF1ab/nsp1622L22LTtaCta11AY.3.10.000085
ORF1ab/nsp1622L22LttAttG11AY.4.20.000022
ORF1ab/nsp1622L22LttAttG11AY.4.40.000409
ORF1ab/nsp1622L22LttAttG11AY.4.50.000107
ORF1ab/nsp1622L22LttAttG11AY.450.000122
ORF1ab/nsp1622L22LTtaCta11AY.460.000104
ORF1ab/nsp1622L22LTtaCta11AY.530.000288
ORF1ab/nsp1622L22LTtaCta11AY.840.000437
ORF1ab/nsp1622L22LttAttG11AY.98.10.000048
ORF1ab/nsp1622L22LttAttG11B.1.1.250.000569
ORF1ab/nsp1622L22LttAttG11B.1.1.2940.001266
ORF1ab/nsp1622L22LTtaCta11B.1.1.540.003021
ORF1ab/nsp1622L22LttAttG11B.1.2210.000071
ORF1ab/nsp1622L22LTtaCta11B.1.2340.000132
ORF1ab/nsp1622L22LTtaCta11B.1.258.70.001912
ORF1ab/nsp1622L22LttAttG11B.1.2680.010417
ORF1ab/nsp1622L22LttAttG11B.1.36.170.000494
ORF1ab/nsp1622L22LttAttG11B.1.4000.000429
ORF1ab/nsp1622L22LttAttG11B.1.5330.009615
ORF1ab/nsp1622L22LttAttG11B.1.6190.000871
ORF1ab/nsp1622L22LTtaCta11B.1.9.50.005682
ORF1ab/nsp1622L22LTtaCta11B.60.00091
ORF1ab/nsp1622L22LTtaCta11Q.80.000165