CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 213 | G213G | G7011G | syn | ggC | ggT | 578 | 462 | 0.799308 | 21295-21297 |
ORF1ab/nsp16 | 213 | G213G | G7011G | syn | ggC | ggA | 578 | 110 | 0.190311 | 21295-21297 |
ORF1ab/nsp16 | 213 | G213G | G7011G | syn | ggC | ggG | 578 | 6 | 0.0103806 | 21295-21297 |
Details of the mutation G213G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 462 | 578 | All | 0.000088 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 110 | 578 | All | 0.000021 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggG | 6 | 578 | All | 0.000001 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 238 | 272 | B.1.1.7 | 0.000213 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 34 | 272 | B.1.1.7 | 0.00003 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 30 | 30 | R.1 | 0.0027 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 26 | 26 | B.1.466.2 | 0.010172 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 19 | 20 | AY.44 | 0.000116 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 20 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 9 | 17 | B.1.177 | 0.000119 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 8 | 17 | B.1.177 | 0.000105 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 17 | 17 | B.1.575 | 0.005158 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 14 | 14 | AY.118 | 0.000877 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 13 | 13 | B.1.3 | 0.034031 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 6 | 12 | B.1 | 0.000055 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 4 | 12 | B.1 | 0.000037 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggG | 2 | 12 | B.1 | 0.000018 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 9 | 11 | AY.39 | 0.000222 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 2 | 11 | AY.39 | 0.000049 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 8 | 10 | B.1.617.2 | 0.00003 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 2 | 10 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 9 | 9 | A.27 | 0.014901 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 6 | 9 | AY.4 | 0.000009 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 3 | 9 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 4 | 6 | AY.3 | 0.00004 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 2 | 6 | AY.3 | 0.00002 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 4 | 5 | AY.119 | 0.000141 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 5 | AY.119 | 0.000035 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 5 | 5 | AY.76 | 0.024155 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 3 | 5 | B.1.2 | 0.000026 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 2 | 5 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 2 | 4 | AY.103 | 0.000012 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 2 | 4 | AY.103 | 0.000012 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 3 | 3 | B.1.1.26 | 0.015707 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 2 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 2 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 2 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggG | 1 | 2 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 2 | B.1.595 | 0.000261 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 2 | B.1.595 | 0.000261 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggG | 1 | 2 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 2 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggG | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggG | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggA | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp16 | 213 | G213G | ggC | ggT | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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