CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 150 | F150F | F6948F | syn | ttC | ttT | 2506 | 2506 | 1 | 21106-21108 |
Details of the mutation F150F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2506 | 2506 | All | 0.000479 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 756 | 756 | B.1.1.7 | 0.000677 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 543 | 543 | Q.3 | 0.078753 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 169 | 169 | B.1.240 | 0.03643 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 130 | 130 | AY.3 | 0.001293 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 92 | 92 | B.1.177 | 0.001211 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 71 | 71 | AY.4 | 0.000111 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 65 | 65 | AY.14 | 0.005721 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 48 | 48 | B.1.526 | 0.001128 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 41 | 41 | AY.103 | 0.000255 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 36 | 36 | AY.54 | 0.003432 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 35 | 35 | B.1.617.2 | 0.000132 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 30 | 30 | AY.44 | 0.000183 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 28 | 28 | AY.114 | 0.006471 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 28 | 28 | AY.43 | 0.000124 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 24 | 24 | B.1.1.519 | 0.000953 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 23 | 23 | P.1 | 0.000362 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 21 | 21 | AY.117 | 0.001775 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 20 | 20 | AY.16.1 | 0.009398 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 18 | 18 | AY.50 | 0.014388 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 17 | 17 | AY.42 | 0.000684 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 15 | 15 | AY.29 | 0.000237 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 13 | 13 | AE.2 | 0.764706 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 10 | 10 | AY.3.1 | 0.000853 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 10 | 10 | AY.68 | 0.002737 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 7 | 7 | Q.8 | 0.001154 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 4 | 4 | AY.23.1 | 0.001669 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 4 | 4 | AY.49 | 0.01278 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 3 | 3 | B.1.1.273 | 0.02027 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | B.1.1.305 | 0.007722 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.1.59 | 0.006494 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.258.15 | 0.018868 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp16 | 150 | F150F | ttC | ttT | 1 | 1 | P.3 | 0.001595 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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