CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = D102Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16102D102YD6900YnonsynGacTac492492120962-20964

Details of the mutation D102Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16102D102YGacTac492492All0.000094
ORF1ab/nsp16102D102YGacTac115115B.1.1.70.000103
ORF1ab/nsp16102D102YGacTac7474AY.40.000115
ORF1ab/nsp16102D102YGacTac6868B.1.20.000599
ORF1ab/nsp16102D102YGacTac6767B.1.5580.305936
ORF1ab/nsp16102D102YGacTac2323AY.4.50.002472
ORF1ab/nsp16102D102YGacTac2020AY.1030.000124
ORF1ab/nsp16102D102YGacTac1616B.10.000147
ORF1ab/nsp16102D102YGacTac1010AY.98.10.000484
ORF1ab/nsp16102D102YGacTac88AY.46.60.000578
ORF1ab/nsp16102D102YGacTac88B.1.617.20.00003
ORF1ab/nsp16102D102YGacTac77B.1.3960.00494
ORF1ab/nsp16102D102YGacTac66AY.430.000027
ORF1ab/nsp16102D102YGacTac66AY.440.000037
ORF1ab/nsp16102D102YGacTac66B.1.3510.000178
ORF1ab/nsp16102D102YGacTac55AY.90.000338
ORF1ab/nsp16102D102YGacTac44A.2.5.10.019231
ORF1ab/nsp16102D102YGacTac44AY.80.002424
ORF1ab/nsp16102D102YGacTac33AY.250.000018
ORF1ab/nsp16102D102YGacTac33B.1.177.860.00055
ORF1ab/nsp16102D102YGacTac22AY.1200.000074
ORF1ab/nsp16102D102YGacTac22AY.360.000296
ORF1ab/nsp16102D102YGacTac22AY.930.000546
ORF1ab/nsp16102D102YGacTac22B.1.4270.000101
ORF1ab/nsp16102D102YGacTac22B.1.5760.001813
ORF1ab/nsp16102D102YGacTac22D.20.00015
ORF1ab/nsp16102D102YGacTac11A0.000387
ORF1ab/nsp16102D102YGacTac11AY.1000.000046
ORF1ab/nsp16102D102YGacTac11AY.1210.000135
ORF1ab/nsp16102D102YGacTac11AY.140.000088
ORF1ab/nsp16102D102YGacTac11AY.170.008197
ORF1ab/nsp16102D102YGacTac11AY.30.00001
ORF1ab/nsp16102D102YGacTac11AY.330.000067
ORF1ab/nsp16102D102YGacTac11AY.390.000025
ORF1ab/nsp16102D102YGacTac11AY.410.000294
ORF1ab/nsp16102D102YGacTac11AY.420.00004
ORF1ab/nsp16102D102YGacTac11AY.50.000021
ORF1ab/nsp16102D102YGacTac11AY.520.000814
ORF1ab/nsp16102D102YGacTac11AY.580.000907
ORF1ab/nsp16102D102YGacTac11AY.870.000833
ORF1ab/nsp16102D102YGacTac11B0.000128
ORF1ab/nsp16102D102YGacTac11B.1.1.3340.016393
ORF1ab/nsp16102D102YGacTac11B.1.1.4340.000349
ORF1ab/nsp16102D102YGacTac11B.1.1.5190.00004
ORF1ab/nsp16102D102YGacTac11B.1.1690.014925
ORF1ab/nsp16102D102YGacTac11B.1.177.770.000726
ORF1ab/nsp16102D102YGacTac11B.1.2470.014925
ORF1ab/nsp16102D102YGacTac11B.1.3010.005917
ORF1ab/nsp16102D102YGacTac11B.1.4320.011236
ORF1ab/nsp16102D102YGacTac11B.1.5960.000087
ORF1ab/nsp16102D102YGacTac11B.1.5990.00365
ORF1ab/nsp16102D102YGacTac11B.1.6230.000536
ORF1ab/nsp16102D102YGacTac11B.60.00091

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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