CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = D102G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16102D102GD6900GnonsyngAcgGc4424400.99547520962-20964
ORF1ab/nsp16102D102GD6900GnonsyngACgGT44210.0022624420962-20964
ORF1ab/nsp16102D102GD6900GnonsyngACgGA44210.0022624420962-20964

Details of the mutation D102G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16102D102GgAcgGc440442All0.000084
ORF1ab/nsp16102D102GgACgGT1442All0
ORF1ab/nsp16102D102GgACgGA1442All0
ORF1ab/nsp16102D102GgAcgGc302302AY.1180.01892
ORF1ab/nsp16102D102GgAcgGc7373B.1.177.200.110774
ORF1ab/nsp16102D102GgAcgGc1414B.1.1.70.000013
ORF1ab/nsp16102D102GgAcgGc1111B.1.617.20.000041
ORF1ab/nsp16102D102GgAcgGc55AY.30.00005
ORF1ab/nsp16102D102GgAcgGc55AY.430.000022
ORF1ab/nsp16102D102GgAcgGc240.111111
ORF1ab/nsp16102D102GgACgGT140.055556
ORF1ab/nsp16102D102GgACgGA140.055556
ORF1ab/nsp16102D102GgAcgGc44B.1.20.000035
ORF1ab/nsp16102D102GgAcgGc44B.1.6280.001409
ORF1ab/nsp16102D102GgAcgGc33AY.1020.00008
ORF1ab/nsp16102D102GgAcgGc22B.1.2390.002442
ORF1ab/nsp16102D102GgAcgGc22B.1.5230.004902
ORF1ab/nsp16102D102GgAcgGc11AY.1040.001984
ORF1ab/nsp16102D102GgAcgGc11AY.390.000025
ORF1ab/nsp16102D102GgAcgGc11AY.40.000002
ORF1ab/nsp16102D102GgAcgGc11AY.99.20.000092
ORF1ab/nsp16102D102GgAcgGc11B.10.000009
ORF1ab/nsp16102D102GgAcgGc11B.1.10.000018
ORF1ab/nsp16102D102GgAcgGc11B.1.1.250.000569
ORF1ab/nsp16102D102GgAcgGc11B.1.360.000146
ORF1ab/nsp16102D102GgAcgGc11B.1.4290.000024
ORF1ab/nsp16102D102GgAcgGc11B.1.6320.006711
ORF1ab/nsp16102D102GgAcgGc11B.1.6370.000073
ORF1ab/nsp16102D102GgAcgGc11C.370.000116
ORF1ab/nsp16102D102GgAcgGc11P.1.120.000484

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.