CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 102 | D102D | D6900D | syn | gaC | gaT | 587 | 587 | 1 | 20962-20964 |
Details of the mutation D102D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 587 | 587 | All | 0.000112 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 168 | 168 | B.1.1.7 | 0.00015 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 40 | 40 | AY.4 | 0.000062 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 34 | 34 | AY.43 | 0.000151 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 33 | 33 | A.2.5 | 0.016467 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 17 | 17 | AY.110 | 0.001916 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 17 | 17 | B.1.351 | 0.000505 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 16 | 16 | B.1.1.306 | 0.007014 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 13 | 13 | AY.75 | 0.000728 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 10 | 10 | B.1.1.385 | 0.044643 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 10 | 10 | B.1.427 | 0.000505 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 4 | 4 | B.1.1.344 | 0.043011 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.386 | 0.066667 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.35 | 0.008475 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 102 | D102D | gaC | gaT | 1 | 1 | Q.1 | 0.000126 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|