CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = D102D

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16102D102DD6900DsyngaCgaT587587120962-20964

Details of the mutation D102D within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16102D102DgaCgaT587587All0.000112
ORF1ab/nsp16102D102DgaCgaT168168B.1.1.70.00015
ORF1ab/nsp16102D102DgaCgaT4040AY.40.000062
ORF1ab/nsp16102D102DgaCgaT3434AY.430.000151
ORF1ab/nsp16102D102DgaCgaT3333A.2.50.016467
ORF1ab/nsp16102D102DgaCgaT2727B.1.617.20.000102
ORF1ab/nsp16102D102DgaCgaT1919AY.250.000114
ORF1ab/nsp16102D102DgaCgaT1818AY.1030.000112
ORF1ab/nsp16102D102DgaCgaT1717AY.1100.001916
ORF1ab/nsp16102D102DgaCgaT1717B.1.3510.000505
ORF1ab/nsp16102D102DgaCgaT1616B.1.1.3060.007014
ORF1ab/nsp16102D102DgaCgaT1313AY.750.000728
ORF1ab/nsp16102D102DgaCgaT1212B.1.20.000106
ORF1ab/nsp16102D102DgaCgaT1111AY.440.000067
ORF1ab/nsp16102D102DgaCgaT1111B.10.000101
ORF1ab/nsp16102D102DgaCgaT1010B.1.1.3850.044643
ORF1ab/nsp16102D102DgaCgaT1010B.1.4270.000505
ORF1ab/nsp16102D102DgaCgaT99AY.1020.000239
ORF1ab/nsp16102D102DgaCgaT99AY.60.00037
ORF1ab/nsp16102D102DgaCgaT66AY.30.00006
ORF1ab/nsp16102D102DgaCgaT55AY.1170.000423
ORF1ab/nsp16102D102DgaCgaT55B.1.4290.000118
ORF1ab/nsp16102D102DgaCgaT44B.1.1.3440.043011
ORF1ab/nsp16102D102DgaCgaT33AY.1210.000406
ORF1ab/nsp16102D102DgaCgaT33AY.230.000209
ORF1ab/nsp16102D102DgaCgaT33AY.50.000062
ORF1ab/nsp16102D102DgaCgaT33AY.610.000314
ORF1ab/nsp16102D102DgaCgaT33B.1.10.000054
ORF1ab/nsp16102D102DgaCgaT33B.1.1600.000094
ORF1ab/nsp16102D102DgaCgaT33B.1.5260.000071
ORF1ab/nsp16102D102DgaCgaT22AY.1000.000092
ORF1ab/nsp16102D102DgaCgaT22AY.130.000322
ORF1ab/nsp16102D102DgaCgaT22AY.200.000078
ORF1ab/nsp16102D102DgaCgaT22AY.290.000032
ORF1ab/nsp16102D102DgaCgaT22AY.39.10.000079
ORF1ab/nsp16102D102DgaCgaT22AY.780.003082
ORF1ab/nsp16102D102DgaCgaT22AY.980.000158
ORF1ab/nsp16102D102DgaCgaT22B0.000256
ORF1ab/nsp16102D102DgaCgaT22B.1.1.5190.000079
ORF1ab/nsp16102D102DgaCgaT22B.1.617.10.000258
ORF1ab/nsp16102D102DgaCgaT22B.1.6370.000146
ORF1ab/nsp16102D102DgaCgaT22B.6.60.001778
ORF1ab/nsp16102D102DgaCgaT22D.20.00015
ORF1ab/nsp16102D102DgaCgaT22P.10.000032
ORF1ab/nsp16102D102DgaCgaT110.055556
ORF1ab/nsp16102D102DgaCgaT11A.10.000282
ORF1ab/nsp16102D102DgaCgaT11AY.116.10.000311
ORF1ab/nsp16102D102DgaCgaT11AY.1180.000063
ORF1ab/nsp16102D102DgaCgaT11AY.1200.000037
ORF1ab/nsp16102D102DgaCgaT11AY.320.000532
ORF1ab/nsp16102D102DgaCgaT11AY.390.000025
ORF1ab/nsp16102D102DgaCgaT11AY.420.00004
ORF1ab/nsp16102D102DgaCgaT11AY.450.000122
ORF1ab/nsp16102D102DgaCgaT11AY.460.000104
ORF1ab/nsp16102D102DgaCgaT11AY.46.50.000198
ORF1ab/nsp16102D102DgaCgaT11AY.46.60.000072
ORF1ab/nsp16102D102DgaCgaT11AY.470.000031
ORF1ab/nsp16102D102DgaCgaT11AY.5.40.000277
ORF1ab/nsp16102D102DgaCgaT11AY.530.000288
ORF1ab/nsp16102D102DgaCgaT11AY.710.000475
ORF1ab/nsp16102D102DgaCgaT11B.1.1.1690.018182
ORF1ab/nsp16102D102DgaCgaT11B.1.1.2050.003717
ORF1ab/nsp16102D102DgaCgaT11B.1.1.250.000569
ORF1ab/nsp16102D102DgaCgaT11B.1.1.2840.000107
ORF1ab/nsp16102D102DgaCgaT11B.1.1.3860.066667
ORF1ab/nsp16102D102DgaCgaT11B.1.1.5180.006329
ORF1ab/nsp16102D102DgaCgaT11B.1.1770.000013
ORF1ab/nsp16102D102DgaCgaT11B.1.177.120.000152
ORF1ab/nsp16102D102DgaCgaT11B.1.177.620.001192
ORF1ab/nsp16102D102DgaCgaT11B.1.2060.000816
ORF1ab/nsp16102D102DgaCgaT11B.1.2320.000537
ORF1ab/nsp16102D102DgaCgaT11B.1.2430.00007
ORF1ab/nsp16102D102DgaCgaT11B.1.258.110.000396
ORF1ab/nsp16102D102DgaCgaT11B.1.350.008475
ORF1ab/nsp16102D102DgaCgaT11B.1.3560.001727
ORF1ab/nsp16102D102DgaCgaT11B.1.36.10.00114
ORF1ab/nsp16102D102DgaCgaT11B.1.36.260.002857
ORF1ab/nsp16102D102DgaCgaT11B.1.4110.003704
ORF1ab/nsp16102D102DgaCgaT11B.1.4560.003268
ORF1ab/nsp16102D102DgaCgaT11B.1.4690.00361
ORF1ab/nsp16102D102DgaCgaT11B.1.5250.000113
ORF1ab/nsp16102D102DgaCgaT11B.1.5640.000426
ORF1ab/nsp16102D102DgaCgaT11B.1.5770.000687
ORF1ab/nsp16102D102DgaCgaT11B.1.5960.000087
ORF1ab/nsp16102D102DgaCgaT11B.1.6090.000479
ORF1ab/nsp16102D102DgaCgaT11C.370.000116
ORF1ab/nsp16102D102DgaCgaT11P.1.140.000048
ORF1ab/nsp16102D102DgaCgaT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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