CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = A258A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16258A258AA7056AsyngcTgcC1961560.79591821430-21432
ORF1ab/nsp16258A258AA7056AsyngcTgcA196240.12244921430-21432
ORF1ab/nsp16258A258AA7056AsyngcTgcG196160.081632721430-21432

Details of the mutation A258A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16258A258AgcTgcC156196All0.00003
ORF1ab/nsp16258A258AgcTgcA24196All0.000005
ORF1ab/nsp16258A258AgcTgcG16196All0.000003
ORF1ab/nsp16258A258AgcTgcC3335AY.430.000146
ORF1ab/nsp16258A258AgcTgcG135AY.430.000004
ORF1ab/nsp16258A258AgcTgcA135AY.430.000004
ORF1ab/nsp16258A258AgcTgcC3135B.1.1.70.000028
ORF1ab/nsp16258A258AgcTgcG335B.1.1.70.000003
ORF1ab/nsp16258A258AgcTgcA135B.1.1.70.000001
ORF1ab/nsp16258A258AgcTgcC2525B.1.20.00022
ORF1ab/nsp16258A258AgcTgcC1414AY.5.40.003874
ORF1ab/nsp16258A258AgcTgcC1313B.1.5060.309524
ORF1ab/nsp16258A258AgcTgcC1112AY.40.000017
ORF1ab/nsp16258A258AgcTgcA112AY.40.000002
ORF1ab/nsp16258A258AgcTgcA1212P.30.019139
ORF1ab/nsp16258A258AgcTgcG99B.1.1.4470.321429
ORF1ab/nsp16258A258AgcTgcC99B.1.617.20.000034
ORF1ab/nsp16258A258AgcTgcA24B.1.1770.000026
ORF1ab/nsp16258A258AgcTgcC14B.1.1770.000013
ORF1ab/nsp16258A258AgcTgcG14B.1.1770.000013
ORF1ab/nsp16258A258AgcTgcC33AY.9.20.00011
ORF1ab/nsp16258A258AgcTgcC22AY.230.000139
ORF1ab/nsp16258A258AgcTgcC22AY.440.000012
ORF1ab/nsp16258A258AgcTgcC12B.10.000009
ORF1ab/nsp16258A258AgcTgcA12B.10.000009
ORF1ab/nsp16258A258AgcTgcC22B.1.4290.000047
ORF1ab/nsp16258A258AgcTgcC11A0.000387
ORF1ab/nsp16258A258AgcTgcG11AY.250.000006
ORF1ab/nsp16258A258AgcTgcA11AY.390.000025
ORF1ab/nsp16258A258AgcTgcG11AY.4.20.000022
ORF1ab/nsp16258A258AgcTgcC11AY.750.000056
ORF1ab/nsp16258A258AgcTgcA11B.1.10.000018
ORF1ab/nsp16258A258AgcTgcC11B.1.1.2220.000204
ORF1ab/nsp16258A258AgcTgcC11B.1.1.250.000569
ORF1ab/nsp16258A258AgcTgcC11B.1.1.2840.000107
ORF1ab/nsp16258A258AgcTgcA11B.1.2580.000067
ORF1ab/nsp16258A258AgcTgcC11B.1.360.000146
ORF1ab/nsp16258A258AgcTgcC11B.1.4270.00005
ORF1ab/nsp16258A258AgcTgcA11B.1.5260.000024
ORF1ab/nsp16258A258AgcTgcC11B.1.5960.000087
ORF1ab/nsp16258A258AgcTgcA11B.60.00091
ORF1ab/nsp16258A258AgcTgcC11B.6.60.000889
ORF1ab/nsp16258A258AgcTgcA11D.20.000075