CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 96 & Codon = gtT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1696V96VV6894VsyngtCgtT475046010.96863220944-20946

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1696V96VgtCgtT46014750All0.00088
ORF1ab/nsp1696V96VgtCgtT773781B.1.1.70.000692
ORF1ab/nsp1696V96VgtCgtT619619B.1.1.1980.908957
ORF1ab/nsp1696V96VgtCgtT419422AY.40.000652
ORF1ab/nsp1696V96VgtCgtT228228B.1.1.2140.012644
ORF1ab/nsp1696V96VgtCgtT207222B.1.617.20.000779
ORF1ab/nsp1696V96VgtCgtT178178AY.1030.001105
ORF1ab/nsp1696V96VgtCgtT169175B.1.20.001488
ORF1ab/nsp1696V96VgtCgtT62124AY.440.000377
ORF1ab/nsp1696V96VgtCgtT119119AY.1200.004424
ORF1ab/nsp1696V96VgtCgtT109109B.1.2340.014382
ORF1ab/nsp1696V96VgtCgtT9898AY.1020.002598
ORF1ab/nsp1696V96VgtCgtT8488B.10.000769
ORF1ab/nsp1696V96VgtCgtT8181B.1.177.50.100621
ORF1ab/nsp1696V96VgtCgtT7676AY.250.000457
ORF1ab/nsp1696V96VgtCgtT7676B.1.2730.987013
ORF1ab/nsp1696V96VgtCgtT6363AY.200.002449
ORF1ab/nsp1696V96VgtCgtT6263B.1.4290.001459
ORF1ab/nsp1696V96VgtCgtT5959B.1.6370.004311
ORF1ab/nsp1696V96VgtCgtT5657P.1.140.002677
ORF1ab/nsp1696V96VgtCgtT5656AY.330.00374
ORF1ab/nsp1696V96VgtCgtT4949AY.30.000487
ORF1ab/nsp1696V96VgtCgtT4646AY.610.00482
ORF1ab/nsp1696V96VgtCgtT4344B.1.5260.001011
ORF1ab/nsp1696V96VgtCgtT4142AY.390.001013
ORF1ab/nsp1696V96VgtCgtT3842AY.430.000168
ORF1ab/nsp1696V96VgtCgtT3939AY.290.000615
ORF1ab/nsp1696V96VgtCgtT3737B.1.6190.03223
ORF1ab/nsp1696V96VgtCgtT3636AY.360.005336
ORF1ab/nsp1696V96VgtCgtT3434B.1.10.000617
ORF1ab/nsp1696V96VgtCgtT3233B.1.2210.002273
ORF1ab/nsp1696V96VgtCgtT3232B.1.1600.000998
ORF1ab/nsp1696V96VgtCgtT2628P.10.00041
ORF1ab/nsp1696V96VgtCgtT2325B.1.1770.000303
ORF1ab/nsp1696V96VgtCgtT2121AY.50.000434
ORF1ab/nsp1696V96VgtCgtT2020AY.1000.00092
ORF1ab/nsp1696V96VgtCgtT1919AY.4.20.000412
ORF1ab/nsp1696V96VgtCgtT1919AY.850.008116
ORF1ab/nsp1696V96VgtCgtT1718P.1.120.008228
ORF1ab/nsp1696V96VgtCgtT1515B.1.2180.07732
ORF1ab/nsp1696V96VgtCgtT1515B.1.2430.001044
ORF1ab/nsp1696V96VgtCgtT1111AY.260.000311
ORF1ab/nsp1696V96VgtCgtT1011AY.39.10.000396
ORF1ab/nsp1696V96VgtCgtT1010B.1.1.100.011148
ORF1ab/nsp1696V96VgtCgtT1010B.1.1.5190.000397
ORF1ab/nsp1696V96VgtCgtT710B.1.5960.00061
ORF1ab/nsp1696V96VgtCgtT99AY.470.00028
ORF1ab/nsp1696V96VgtCgtT99B.1.177.820.004296
ORF1ab/nsp1696V96VgtCgtT99B.1.3490.006433
ORF1ab/nsp1696V96VgtCgtT77AY.1210.000947
ORF1ab/nsp1696V96VgtCgtT77AY.160.002658
ORF1ab/nsp1696V96VgtCgtT77B.1.1.1890.01059
ORF1ab/nsp1696V96VgtCgtT77C.370.000812
ORF1ab/nsp1696V96VgtCgtT26AY.90.000135
ORF1ab/nsp1696V96VgtCgtT66B.1.1490.020548
ORF1ab/nsp1696V96VgtCgtT56B.1.360.00073
ORF1ab/nsp1696V96VgtCgtT66B.1.617.10.000774
ORF1ab/nsp1696V96VgtCgtT66P.1.70.001916
ORF1ab/nsp1696V96VgtCgtT55AY.1190.000177
ORF1ab/nsp1696V96VgtCgtT55AY.340.000485
ORF1ab/nsp1696V96VgtCgtT55AY.450.000608
ORF1ab/nsp1696V96VgtCgtT55AY.750.00028
ORF1ab/nsp1696V96VgtCgtT55AY.98.10.000242
ORF1ab/nsp1696V96VgtCgtT55B.1.1.2220.00102
ORF1ab/nsp1696V96VgtCgtT55B.1.1.3680.015432
ORF1ab/nsp1696V96VgtCgtT55B.1.221.10.014535
ORF1ab/nsp1696V96VgtCgtT44AY.1140.000924
ORF1ab/nsp1696V96VgtCgtT44AY.550.00367
ORF1ab/nsp1696V96VgtCgtT44AY.980.000316
ORF1ab/nsp1696V96VgtCgtT44B.1.177.120.000607
ORF1ab/nsp1696V96VgtCgtT44B.1.177.320.005398
ORF1ab/nsp1696V96VgtCgtT44B.1.177.550.009324
ORF1ab/nsp1696V96VgtCgtT44B.1.3510.000119
ORF1ab/nsp1696V96VgtCgtT44B.1.36.10.004561
ORF1ab/nsp1696V96VgtCgtT44B.1.3690.001141
ORF1ab/nsp1696V96VgtCgtT44B.1.4270.000202
ORF1ab/nsp1696V96VgtCgtT44B.1.4430.018692
ORF1ab/nsp1696V96VgtCgtT44B.1.6090.001918
ORF1ab/nsp1696V96VgtCgtT44B.1.6280.001409
ORF1ab/nsp1696V96VgtCgtT44P.20.000747
ORF1ab/nsp1696V96VgtCgtT44R.10.00036
ORF1ab/nsp1696V96VgtCgtT13A0.000387
ORF1ab/nsp1696V96VgtCgtT33AY.1180.000188
ORF1ab/nsp1696V96VgtCgtT33AY.320.001597
ORF1ab/nsp1696V96VgtCgtT33AY.34.10.00153
ORF1ab/nsp1696V96VgtCgtT33AY.460.000312
ORF1ab/nsp1696V96VgtCgtT23AY.520.001629
ORF1ab/nsp1696V96VgtCgtT33B.1.1.3480.002389
ORF1ab/nsp1696V96VgtCgtT33B.1.1.4380.15
ORF1ab/nsp1696V96VgtCgtT33B.1.2910.057692
ORF1ab/nsp1696V96VgtCgtT33B.1.36.180.001261
ORF1ab/nsp1696V96VgtCgtT33B.1.36.290.001552
ORF1ab/nsp1696V96VgtCgtT33B.1.4000.001287
ORF1ab/nsp1696V96VgtCgtT33B.1.429.10.036145
ORF1ab/nsp1696V96VgtCgtT22A.2.50.000998
ORF1ab/nsp1696V96VgtCgtT22AP.10.003003
ORF1ab/nsp1696V96VgtCgtT22AY.1010.000981
ORF1ab/nsp1696V96VgtCgtT22AY.1130.000285
ORF1ab/nsp1696V96VgtCgtT22AY.116.10.000623
ORF1ab/nsp1696V96VgtCgtT22AY.1170.000169
ORF1ab/nsp1696V96VgtCgtT22AY.130.000322
ORF1ab/nsp1696V96VgtCgtT22AY.230.000139
ORF1ab/nsp1696V96VgtCgtT22AY.240.000862
ORF1ab/nsp1696V96VgtCgtT22AY.270.000129
ORF1ab/nsp1696V96VgtCgtT22AY.4.2.10.000298
ORF1ab/nsp1696V96VgtCgtT22AY.46.60.000144
ORF1ab/nsp1696V96VgtCgtT22AY.5.30.000675
ORF1ab/nsp1696V96VgtCgtT22AY.540.000191
ORF1ab/nsp1696V96VgtCgtT22AY.590.001059
ORF1ab/nsp1696V96VgtCgtT22AY.60.000082
ORF1ab/nsp1696V96VgtCgtT22AY.690.000373
ORF1ab/nsp1696V96VgtCgtT22AY.9.20.000073
ORF1ab/nsp1696V96VgtCgtT22AY.99.20.000184
ORF1ab/nsp1696V96VgtCgtT12B0.000128
ORF1ab/nsp1696V96VgtCgtT22B.1.1.10.000653
ORF1ab/nsp1696V96VgtCgtT22B.1.1.3690.000892
ORF1ab/nsp1696V96VgtCgtT22B.1.1.370.000386
ORF1ab/nsp1696V96VgtCgtT22B.1.1.4850.033333
ORF1ab/nsp1696V96VgtCgtT22B.1.1.630.000772
ORF1ab/nsp1696V96VgtCgtT22B.1.177.600.000437
ORF1ab/nsp1696V96VgtCgtT22B.1.177.70.00033
ORF1ab/nsp1696V96VgtCgtT22B.1.1900.02
ORF1ab/nsp1696V96VgtCgtT22B.1.2580.000133
ORF1ab/nsp1696V96VgtCgtT22B.1.4130.008511
ORF1ab/nsp1696V96VgtCgtT22B.1.5250.000226
ORF1ab/nsp1696V96VgtCgtT22B.1.5750.000607
ORF1ab/nsp1696V96VgtCgtT22B.1.6210.000177
ORF1ab/nsp1696V96VgtCgtT22C.1.10.153846
ORF1ab/nsp1696V96VgtCgtT22D.20.00015
ORF1ab/nsp1696V96VgtCgtT110.055556
ORF1ab/nsp1696V96VgtCgtT11A.23.10.000704
ORF1ab/nsp1696V96VgtCgtT11AV.10.005051
ORF1ab/nsp1696V96VgtCgtT11AY.1070.000466
ORF1ab/nsp1696V96VgtCgtT11AY.1160.000287
ORF1ab/nsp1696V96VgtCgtT11AY.170.008197
ORF1ab/nsp1696V96VgtCgtT11AY.350.000233
ORF1ab/nsp1696V96VgtCgtT11AY.4.10.000737
ORF1ab/nsp1696V96VgtCgtT11AY.620.000436
ORF1ab/nsp1696V96VgtCgtT11AY.680.000274
ORF1ab/nsp1696V96VgtCgtT11AY.740.000116
ORF1ab/nsp1696V96VgtCgtT11AY.770.001127
ORF1ab/nsp1696V96VgtCgtT11AY.780.001541
ORF1ab/nsp1696V96VgtCgtT11AY.790.001211
ORF1ab/nsp1696V96VgtCgtT11AY.800.001129
ORF1ab/nsp1696V96VgtCgtT11AY.840.000437
ORF1ab/nsp1696V96VgtCgtT11AY.880.000884
ORF1ab/nsp1696V96VgtCgtT11AY.920.000287
ORF1ab/nsp1696V96VgtCgtT11AY.930.000273
ORF1ab/nsp1696V96VgtCgtT11AY.970.001701
ORF1ab/nsp1696V96VgtCgtT11B.1.1.1530.001095
ORF1ab/nsp1696V96VgtCgtT11B.1.1.1760.000439
ORF1ab/nsp1696V96VgtCgtT11B.1.1.1920.002309
ORF1ab/nsp1696V96VgtCgtT11B.1.1.2160.00089
ORF1ab/nsp1696V96VgtCgtT11B.1.1.2200.001859
ORF1ab/nsp1696V96VgtCgtT11B.1.1.2730.006757
ORF1ab/nsp1696V96VgtCgtT11B.1.1.2840.000107
ORF1ab/nsp1696V96VgtCgtT11B.1.1.3060.000438
ORF1ab/nsp1696V96VgtCgtT11B.1.1.3160.000925
ORF1ab/nsp1696V96VgtCgtT11B.1.1.330.000421
ORF1ab/nsp1696V96VgtCgtT11B.1.1.3760.005952
ORF1ab/nsp1696V96VgtCgtT11B.1.1.390.00051
ORF1ab/nsp1696V96VgtCgtT11B.1.1.40.002976
ORF1ab/nsp1696V96VgtCgtT11B.1.1.4090.002833
ORF1ab/nsp1696V96VgtCgtT11B.1.1.4300.041667
ORF1ab/nsp1696V96VgtCgtT11B.1.1.540.003021
ORF1ab/nsp1696V96VgtCgtT11B.1.1.890.006061
ORF1ab/nsp1696V96VgtCgtT11B.1.1390.000733
ORF1ab/nsp1696V96VgtCgtT11B.1.177.180.00116
ORF1ab/nsp1696V96VgtCgtT11B.1.177.210.000076
ORF1ab/nsp1696V96VgtCgtT11B.1.177.240.001295
ORF1ab/nsp1696V96VgtCgtT11B.1.177.40.000211
ORF1ab/nsp1696V96VgtCgtT11B.1.177.770.000726
ORF1ab/nsp1696V96VgtCgtT11B.1.177.860.000183
ORF1ab/nsp1696V96VgtCgtT11B.1.1890.004292
ORF1ab/nsp1696V96VgtCgtT11B.1.2060.000816
ORF1ab/nsp1696V96VgtCgtT11B.1.2400.000216
ORF1ab/nsp1696V96VgtCgtT11B.1.3060.005714
ORF1ab/nsp1696V96VgtCgtT11B.1.3290.000608
ORF1ab/nsp1696V96VgtCgtT11B.1.36.170.000494
ORF1ab/nsp1696V96VgtCgtT11B.1.36.350.002604
ORF1ab/nsp1696V96VgtCgtT11B.1.4460.02
ORF1ab/nsp1696V96VgtCgtT11B.1.466.20.000391
ORF1ab/nsp1696V96VgtCgtT11B.1.4740.001901
ORF1ab/nsp1696V96VgtCgtT11B.1.4990.00105
ORF1ab/nsp1696V96VgtCgtT11B.1.5040.03125
ORF1ab/nsp1696V96VgtCgtT11B.1.5400.009709
ORF1ab/nsp1696V96VgtCgtT11B.1.5760.000907
ORF1ab/nsp1696V96VgtCgtT11B.1.5770.000687
ORF1ab/nsp1696V96VgtCgtT11B.1.5970.00463
ORF1ab/nsp1696V96VgtCgtT11B.110.005128
ORF1ab/nsp1696V96VgtCgtT11B.40.002208
ORF1ab/nsp1696V96VgtCgtT11C.10.002392
ORF1ab/nsp1696V96VgtCgtT11C.160.00106
ORF1ab/nsp1696V96VgtCgtT11C.36.30.000567
ORF1ab/nsp1696V96VgtCgtT11K.20.04
ORF1ab/nsp1696V96VgtCgtT11P.1.150.000232
ORF1ab/nsp1696V96VgtCgtT11P.1.170.000162
ORF1ab/nsp1696V96VgtCgtT11Q.20.000613
ORF1ab/nsp1696V96VgtCgtT11Q.30.000145
ORF1ab/nsp1696V96VgtCgtT11Q.40.000455
ORF1ab/nsp1696V96VgtCgtT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.