CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 96 & Codon = gtA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1696V96VV6894VsyngtCgtA47501410.029684220944-20946

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1696V96VgtCgtA1414750All0.000027
ORF1ab/nsp1696V96VgtCgtA7781B.1.1.70.000006
ORF1ab/nsp1696V96VgtCgtA3422AY.40.000005
ORF1ab/nsp1696V96VgtCgtA12222B.1.617.20.000045
ORF1ab/nsp1696V96VgtCgtA6175B.1.20.000053
ORF1ab/nsp1696V96VgtCgtA62124AY.440.000377
ORF1ab/nsp1696V96VgtCgtA488B.10.000037
ORF1ab/nsp1696V96VgtCgtA163B.1.4290.000024
ORF1ab/nsp1696V96VgtCgtA144B.1.5260.000024
ORF1ab/nsp1696V96VgtCgtA142AY.390.000025
ORF1ab/nsp1696V96VgtCgtA442AY.430.000018
ORF1ab/nsp1696V96VgtCgtA133B.1.2210.000071
ORF1ab/nsp1696V96VgtCgtA228P.10.000032
ORF1ab/nsp1696V96VgtCgtA225B.1.1770.000026
ORF1ab/nsp1696V96VgtCgtA118P.1.120.000484
ORF1ab/nsp1696V96VgtCgtA1313AM.40.046429
ORF1ab/nsp1696V96VgtCgtA310B.1.5960.000261
ORF1ab/nsp1696V96VgtCgtA46AY.90.00027
ORF1ab/nsp1696V96VgtCgtA23A0.000774
ORF1ab/nsp1696V96VgtCgtA13AY.520.000814
ORF1ab/nsp1696V96VgtCgtA12B0.000128
ORF1ab/nsp1696V96VgtCgtA11AY.120.10.000321
ORF1ab/nsp1696V96VgtCgtA11AY.140.000088
ORF1ab/nsp1696V96VgtCgtA11B.1.1.2100.005714
ORF1ab/nsp1696V96VgtCgtA11B.1.1040.00369
ORF1ab/nsp1696V96VgtCgtA11B.1.1110.001175
ORF1ab/nsp1696V96VgtCgtA11B.1.3010.005917
ORF1ab/nsp1696V96VgtCgtA11B.1.621.10.000506
ORF1ab/nsp1696V96VgtCgtA11B.1.6230.000536
ORF1ab/nsp1696V96VgtCgtA11B.60.00091
ORF1ab/nsp1696V96VgtCgtA11B.6.60.000889

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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