CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 96 | V96F | V6894F | nonsyn | Gtc | Ttc | 521 | 521 | 1 | 20944-20946 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 521 | 521 | All | 0.0001 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 113 | 113 | AY.4 | 0.000176 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 104 | 104 | AY.98.1 | 0.005037 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 40 | 40 | B.1.1.7 | 0.000036 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 34 | 34 | B.1.617.2 | 0.000128 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 27 | 27 | AY.44 | 0.000164 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 13 | 13 | AY.4.2 | 0.000282 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.1.421 | 0.030303 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.429.1 | 0.012048 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp16 | 96 | V96F | Gtc | Ttc | 1 | 1 | P.1.7 | 0.000319 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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