CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 94 & Codon = ctT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1694L94LL6892LsynctGctT163413270.81211820938-20940

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1694L94LctGctT13271634All0.000254
ORF1ab/nsp1694L94LctGctT701701B.1.1.4330.998575
ORF1ab/nsp1694L94LctGctT82150B.1.1.70.000073
ORF1ab/nsp1694L94LctGctT6580B.1.617.20.000245
ORF1ab/nsp1694L94LctGctT4046B.10.000366
ORF1ab/nsp1694L94LctGctT2344AY.40.000036
ORF1ab/nsp1694L94LctGctT2936AY.430.000128
ORF1ab/nsp1694L94LctGctT2333AY.440.00014
ORF1ab/nsp1694L94LctGctT3333B.1.4740.062738
ORF1ab/nsp1694L94LctGctT2428B.1.10.000435
ORF1ab/nsp1694L94LctGctT2025AY.1030.000124
ORF1ab/nsp1694L94LctGctT222AY.70.000392
ORF1ab/nsp1694L94LctGctT2020AY.420.000805
ORF1ab/nsp1694L94LctGctT719B.1.4290.000165
ORF1ab/nsp1694L94LctGctT1717AY.1060.005693
ORF1ab/nsp1694L94LctGctT1617B.1.3510.000476
ORF1ab/nsp1694L94LctGctT1014AY.250.00006
ORF1ab/nsp1694L94LctGctT1414C.370.001625
ORF1ab/nsp1694L94LctGctT1313B.1.4270.000656
ORF1ab/nsp1694L94LctGctT511B.1.20.000044
ORF1ab/nsp1694L94LctGctT1010AY.1140.002311
ORF1ab/nsp1694L94LctGctT910AY.4.20.000195
ORF1ab/nsp1694L94LctGctT610B.1.1770.000079
ORF1ab/nsp1694L94LctGctT19AY.1020.000027
ORF1ab/nsp1694L94LctGctT68AY.1190.000212
ORF1ab/nsp1694L94LctGctT88AY.98.10.000387
ORF1ab/nsp1694L94LctGctT78B.1.2320.003761
ORF1ab/nsp1694L94LctGctT47AY.30.00004
ORF1ab/nsp1694L94LctGctT77B.1.1.3180.002112
ORF1ab/nsp1694L94LctGctT77B.1.1.3220.061404
ORF1ab/nsp1694L94LctGctT56AY.260.000142
ORF1ab/nsp1694L94LctGctT56AY.390.000124
ORF1ab/nsp1694L94LctGctT66B.1.5950.001566
ORF1ab/nsp1694L94LctGctT56P.10.000079
ORF1ab/nsp1694L94LctGctT55B.1.177.40.001055
ORF1ab/nsp1694L94LctGctT55C.360.004554
ORF1ab/nsp1694L94LctGctT140.055556
ORF1ab/nsp1694L94LctGctT44AY.340.000388
ORF1ab/nsp1694L94LctGctT44AY.790.004843
ORF1ab/nsp1694L94LctGctT34B.1.2430.000209
ORF1ab/nsp1694L94LctGctT44B.1.351.20.00121
ORF1ab/nsp1694L94LctGctT33AY.1170.000254
ORF1ab/nsp1694L94LctGctT33AY.200.000117
ORF1ab/nsp1694L94LctGctT23AY.610.00021
ORF1ab/nsp1694L94LctGctT13AY.9.20.000037
ORF1ab/nsp1694L94LctGctT23B.1.2340.000264
ORF1ab/nsp1694L94LctGctT33B.1.36.290.001552
ORF1ab/nsp1694L94LctGctT22AY.1000.000092
ORF1ab/nsp1694L94LctGctT12AY.230.00007
ORF1ab/nsp1694L94LctGctT22AY.29.10.000441
ORF1ab/nsp1694L94LctGctT22AY.50.000041
ORF1ab/nsp1694L94LctGctT12AY.5.30.000337
ORF1ab/nsp1694L94LctGctT22AY.750.000112
ORF1ab/nsp1694L94LctGctT12AY.9.10.000084
ORF1ab/nsp1694L94LctGctT12AY.980.000079
ORF1ab/nsp1694L94LctGctT22B.1.1.2140.000111
ORF1ab/nsp1694L94LctGctT22B.1.1.2360.013793
ORF1ab/nsp1694L94LctGctT22B.1.1.700.000682
ORF1ab/nsp1694L94LctGctT22B.1.2370.00995
ORF1ab/nsp1694L94LctGctT22B.1.5960.000174
ORF1ab/nsp1694L94LctGctT11AY.1100.000113
ORF1ab/nsp1694L94LctGctT11AY.1180.000063
ORF1ab/nsp1694L94LctGctT11AY.120.10.000321
ORF1ab/nsp1694L94LctGctT11AY.1210.000135
ORF1ab/nsp1694L94LctGctT11AY.240.000431
ORF1ab/nsp1694L94LctGctT11AY.360.000148
ORF1ab/nsp1694L94LctGctT11AY.46.50.000198
ORF1ab/nsp1694L94LctGctT11AY.46.60.000072
ORF1ab/nsp1694L94LctGctT11AY.550.000917
ORF1ab/nsp1694L94LctGctT11AY.60.000041
ORF1ab/nsp1694L94LctGctT11AY.740.000116
ORF1ab/nsp1694L94LctGctT11AY.850.000427
ORF1ab/nsp1694L94LctGctT11AY.880.000884
ORF1ab/nsp1694L94LctGctT11AY.990.001049
ORF1ab/nsp1694L94LctGctT11B.1.1.2820.011628
ORF1ab/nsp1694L94LctGctT11B.1.1.3060.000438
ORF1ab/nsp1694L94LctGctT11B.1.1.3170.000412
ORF1ab/nsp1694L94LctGctT11B.1.1.390.00051
ORF1ab/nsp1694L94LctGctT11B.1.1.4360.025641
ORF1ab/nsp1694L94LctGctT11B.1.1.460.004367
ORF1ab/nsp1694L94LctGctT11B.1.1.5190.00004
ORF1ab/nsp1694L94LctGctT11B.1.1.540.003021
ORF1ab/nsp1694L94LctGctT11B.1.1600.000031
ORF1ab/nsp1694L94LctGctT11B.1.160.320.004292
ORF1ab/nsp1694L94LctGctT11B.1.177.120.000152
ORF1ab/nsp1694L94LctGctT11B.1.2100.002132
ORF1ab/nsp1694L94LctGctT11B.1.258.140.00098
ORF1ab/nsp1694L94LctGctT11B.1.466.20.000391
ORF1ab/nsp1694L94LctGctT11B.1.4670.04
ORF1ab/nsp1694L94LctGctT11B.1.596.10.009346
ORF1ab/nsp1694L94LctGctT11B.1.80.001972
ORF1ab/nsp1694L94LctGctT11C.36.30.000567
ORF1ab/nsp1694L94LctGctT11N.40.004255
ORF1ab/nsp1694L94LctGctT11P.1.170.000162
ORF1ab/nsp1694L94LctGctT11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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