CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 94 & Codon = ctA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1694L94LL6892LsynctGctA16341500.091799320938-20940

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1694L94LctGctA1501634All0.000029
ORF1ab/nsp1694L94LctGctA20150B.1.1.70.000018
ORF1ab/nsp1694L94LctGctA580B.1.617.20.000019
ORF1ab/nsp1694L94LctGctA346B.10.000027
ORF1ab/nsp1694L94LctGctA344AY.40.000005
ORF1ab/nsp1694L94LctGctA636AY.430.000027
ORF1ab/nsp1694L94LctGctA333AY.440.000018
ORF1ab/nsp1694L94LctGctA3232B.1.177.810.006058
ORF1ab/nsp1694L94LctGctA228B.1.10.000036
ORF1ab/nsp1694L94LctGctA325AY.1030.000019
ORF1ab/nsp1694L94LctGctA2022AY.70.00392
ORF1ab/nsp1694L94LctGctA119B.1.4290.000024
ORF1ab/nsp1694L94LctGctA114AY.250.000006
ORF1ab/nsp1694L94LctGctA513B.1.2210.000355
ORF1ab/nsp1694L94LctGctA111B.1.20.000009
ORF1ab/nsp1694L94LctGctA110AY.4.20.000022
ORF1ab/nsp1694L94LctGctA410B.1.1770.000053
ORF1ab/nsp1694L94LctGctA69AY.1020.000159
ORF1ab/nsp1694L94LctGctA28AY.1190.000071
ORF1ab/nsp1694L94LctGctA27AY.30.00002
ORF1ab/nsp1694L94LctGctA77AY.99.20.000645
ORF1ab/nsp1694L94LctGctA16AY.390.000025
ORF1ab/nsp1694L94LctGctA16P.10.000016
ORF1ab/nsp1694L94LctGctA35B.1.617.10.000387
ORF1ab/nsp1694L94LctGctA240.111111
ORF1ab/nsp1694L94LctGctA14B.1.2430.00007
ORF1ab/nsp1694L94LctGctA33AY.470.000093
ORF1ab/nsp1694L94LctGctA13AY.610.000105
ORF1ab/nsp1694L94LctGctA12AY.5.30.000337
ORF1ab/nsp1694L94LctGctA12AY.980.000079
ORF1ab/nsp1694L94LctGctA22B.1.360.000292
ORF1ab/nsp1694L94LctGctA12B.1.5260.000024
ORF1ab/nsp1694L94LctGctA11AY.23.10.000417
ORF1ab/nsp1694L94LctGctA11AY.330.000067
ORF1ab/nsp1694L94LctGctA11AY.4.50.000107
ORF1ab/nsp1694L94LctGctA11AY.730.000665
ORF1ab/nsp1694L94LctGctA11AY.80.000606
ORF1ab/nsp1694L94LctGctA11B.1.1.330.000421

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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