CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 94 & Codon = Ttg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1694L94LL6892LsynCtgTtg16341500.091799320938-20940

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1694L94LCtgTtg1501634All0.000029
ORF1ab/nsp1694L94LCtgTtg48150B.1.1.70.000043
ORF1ab/nsp1694L94LCtgTtg1080B.1.617.20.000038
ORF1ab/nsp1694L94LCtgTtg346B.10.000027
ORF1ab/nsp1694L94LCtgTtg1744AY.40.000026
ORF1ab/nsp1694L94LCtgTtg136AY.430.000004
ORF1ab/nsp1694L94LCtgTtg633AY.440.000037
ORF1ab/nsp1694L94LCtgTtg228B.1.10.000036
ORF1ab/nsp1694L94LCtgTtg225AY.1030.000012
ORF1ab/nsp1694L94LCtgTtg1119B.1.4290.000259
ORF1ab/nsp1694L94LCtgTtg117B.1.3510.00003
ORF1ab/nsp1694L94LCtgTtg314AY.250.000018
ORF1ab/nsp1694L94LCtgTtg813B.1.2210.000568
ORF1ab/nsp1694L94LCtgTtg511B.1.20.000044
ORF1ab/nsp1694L94LCtgTtg19AY.1020.000027
ORF1ab/nsp1694L94LCtgTtg18B.1.2320.000537
ORF1ab/nsp1694L94LCtgTtg17AY.30.00001
ORF1ab/nsp1694L94LCtgTtg16AY.260.000028
ORF1ab/nsp1694L94LCtgTtg25B.1.617.10.000258
ORF1ab/nsp1694L94LCtgTtg140.055556
ORF1ab/nsp1694L94LCtgTtg33AY.460.000312
ORF1ab/nsp1694L94LCtgTtg13AY.9.20.000037
ORF1ab/nsp1694L94LCtgTtg13B.1.2340.000132
ORF1ab/nsp1694L94LCtgTtg12AY.9.10.000084
ORF1ab/nsp1694L94LCtgTtg22AY.960.004149
ORF1ab/nsp1694L94LCtgTtg22B.1.2580.000133
ORF1ab/nsp1694L94LCtgTtg12B.1.5260.000024
ORF1ab/nsp1694L94LCtgTtg11A.10.000282
ORF1ab/nsp1694L94LCtgTtg11AY.370.000316
ORF1ab/nsp1694L94LCtgTtg11AY.450.000122
ORF1ab/nsp1694L94LCtgTtg11AY.90.000068
ORF1ab/nsp1694L94LCtgTtg11B.1.1.10.000327
ORF1ab/nsp1694L94LCtgTtg11B.1.1.2070.001182
ORF1ab/nsp1694L94LCtgTtg11B.1.1.2220.000204
ORF1ab/nsp1694L94LCtgTtg11B.1.1.3540.004386
ORF1ab/nsp1694L94LCtgTtg11B.1.1.4320.001266
ORF1ab/nsp1694L94LCtgTtg11B.1.1950.005025
ORF1ab/nsp1694L94LCtgTtg11B.1.36.370.002778
ORF1ab/nsp1694L94LCtgTtg11B.1.416.10.001563
ORF1ab/nsp1694L94LCtgTtg11B.1.438.10.000107
ORF1ab/nsp1694L94LCtgTtg11B.1.6200.000946
ORF1ab/nsp1694L94LCtgTtg11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.