CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 93 | T93T | T6891T | syn | acG | acT | 34981 | 34374 | 0.982648 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93T | T6891T | syn | acG | acA | 34981 | 583 | 0.0166662 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93T | T6891T | syn | acG | acC | 34981 | 24 | 0.000686087 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93M | T6891M | nonsyn | aCg | aTg | 1367 | 1367 | 1 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93A | T6891A | nonsyn | Acg | Gcg | 1207 | 1205 | 0.998343 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93A | T6891A | nonsyn | AcG | GcC | 1207 | 1 | 0.0008285 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93A | T6891A | nonsyn | AcG | GcA | 1207 | 1 | 0.0008285 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93del | T6891del | del | ACG | --- | 24 | 24 | 1 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93V | T6891V | nonsyn | ACg | GTg | 14 | 13 | 0.928571 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93V | T6891V | nonsyn | ACG | GTA | 14 | 1 | 0.0714286 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93S | T6891S | nonsyn | Acg | Tcg | 9 | 9 | 1 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93I | T6891I | nonsyn | aCG | aTT | 9 | 6 | 0.666667 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93I | T6891I | nonsyn | aCG | aTA | 9 | 3 | 0.333333 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93del1 | T6891del1 | del | aCg | a-g | 3 | 2 | 0.666667 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93del1 | T6891del1 | del | acG | ac- | 3 | 1 | 0.333333 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93P | T6891P | nonsyn | Acg | Ccg | 2 | 2 | 1 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93R | T6891R | nonsyn | aCg | aGg | 1 | 1 | 1 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93del2 | T6891del2 | del | ACg | --g | 1 | 1 | 1 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93Y | T6891Y | nonsyn | ACG | TAC | 1 | 1 | 1 | 20935-20937 |
ORF1ab/nsp16 | 93 | T93K | T6891K | nonsyn | aCg | aAg | 1 | 1 | 1 | 20935-20937 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 34374 | 34981 | All | 0.006574 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 583 | 34981 | All | 0.000112 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 24 | 34981 | All | 0.000005 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 16536 | 16573 | B.1.617.2 | 0.062265 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 36 | 16573 | B.1.617.2 | 0.000136 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 1 | 16573 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 10324 | 10329 | AY.43 | 0.04574 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 4 | 10329 | AY.43 | 0.000018 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 1 | 10329 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 3111 | 3111 | AY.12 | 0.983249 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1367 | 1367 | All | 0.000261 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1205 | 1207 | All | 0.00023 |
ORF1ab/nsp16 | 93 | T93A | AcG | GcA | 1 | 1207 | All | 0 |
ORF1ab/nsp16 | 93 | T93A | AcG | GcC | 1 | 1207 | All | 0 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 833 | 844 | AY.44 | 0.00507 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 11 | 844 | AY.44 | 0.000067 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 603 | 604 | AY.39 | 0.014901 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 604 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 411 | 411 | AY.4.2 | 0.008914 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 375 | 377 | AY.46 | 0.03903 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 2 | 377 | AY.46 | 0.000208 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 347 | 358 | AY.102 | 0.0092 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 11 | 358 | AY.102 | 0.000292 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 340 | 340 | B.1.617.1 | 0.043848 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 291 | 291 | AY.6 | 0.011968 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 215 | 259 | B.1.1.7 | 0.000192 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 43 | 259 | B.1.1.7 | 0.000038 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 1 | 259 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 211 | 211 | AY.4 | 0.000328 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 179 | 180 | AY.5.4 | 0.04953 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 180 | AY.5.4 | 0.000277 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 129 | 157 | AY.33 | 0.008614 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 28 | 157 | AY.33 | 0.00187 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 110 | 129 | AY.103 | 0.000683 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 19 | 129 | AY.103 | 0.000118 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 123 | 123 | AY.34.1 | 0.062723 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 123 | 123 | B.1.1.7 | 0.00011 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 120 | 120 | AY.4 | 0.000187 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 114 | 114 | B.1.1.265 | 0.359621 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 112 | 112 | AY.45 | 0.013629 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 98 | 99 | AY.117 | 0.008283 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 99 | AY.117 | 0.000085 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 79 | 87 | AY.68 | 0.021626 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 8 | 87 | AY.68 | 0.00219 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 85 | 85 | AY.84 | 0.037183 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 66 | 70 | B.1.2 | 0.000581 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 4 | 70 | B.1.2 | 0.000035 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 65 | 66 | AY.119 | 0.002295 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 66 | AY.119 | 0.000035 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 65 | 66 | B.1.617.2 | 0.000245 |
ORF1ab/nsp16 | 93 | T93A | AcG | GcC | 1 | 66 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 51 | 51 | AY.88 | 0.045093 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 51 | 51 | B.1 | 0.000467 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 42 | 50 | AY.25 | 0.000253 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 8 | 50 | AY.25 | 0.000048 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 46 | 46 | AY.99 | 0.048269 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 26 | 45 | AY.4 | 0.00004 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 19 | 45 | AY.4 | 0.00003 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 44 | 44 | AY.58 | 0.039927 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 43 | 43 | B.1.351 | 0.001278 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 39 | 41 | AY.5.3 | 0.013158 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 2 | 41 | AY.5.3 | 0.000675 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 40 | 40 | AY.23 | 0.00279 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 39 | 39 | AY.32 | 0.020767 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 35 | 35 | AY.105 | 0.022508 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 34 | 35 | AY.5 | 0.000702 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 35 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 32 | 32 | B.1.1.519 | 0.001271 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 31 | 31 | AY.111 | 0.005678 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 31 | 31 | AY.42 | 0.001247 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 27 | 31 | B.1 | 0.000247 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 3 | 31 | B.1 | 0.000027 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 1 | 31 | B.1 | 0.000009 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 29 | 29 | AY.19 | 0.033067 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 29 | 29 | AY.46.6 | 0.002094 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 28 | 29 | AY.98 | 0.002212 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 29 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 29 | 29 | B.1.160 | 0.000904 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 29 | 29 | B.1.565 | 0.023501 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 29 | 29 | Q.1 | 0.003663 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 28 | 28 | AY.108 | 0.030871 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 28 | 28 | B.1.1.7 | 0.000025 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 28 | 28 | B.1.617.2 | 0.000105 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 28 | 28 | P.2 | 0.005226 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 26 | 26 | AY.39 | 0.000642 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 26 | 26 | AY.92 | 0.007469 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 25 | 25 | AY.56 | 0.040128 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 24 | 24 | All | 0.000005 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 24 | 24 | AY.89 | 0.117647 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 23 | 23 | AY.4.2 | 0.000499 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 22 | 22 | AY.42 | 0.000885 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 21 | 22 | AY.46.2 | 0.013342 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 22 | AY.46.2 | 0.000635 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 21 | 21 | B.1.1 | 0.000381 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 19 | 19 | A.2.5 | 0.009481 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 17 | 17 | AY.121 | 0.0023 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 17 | 17 | AY.14 | 0.001496 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 13 | 17 | AY.20 | 0.000505 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 4 | 17 | AY.20 | 0.000155 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 16 | 17 | AY.47 | 0.000498 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 17 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 17 | 17 | AY.98.1 | 0.000823 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 13 | 17 | P.1 | 0.000205 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 3 | 17 | P.1 | 0.000047 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 1 | 17 | P.1 | 0.000016 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 16 | 16 | AY.43 | 0.000071 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 16 | 16 | AY.8 | 0.009697 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 16 | 16 | B.1.1.337 | 0.057554 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 15 | 15 | B.1.1.371 | 0.15625 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 15 | 15 | B.40 | 0.005464 |
ORF1ab/nsp16 | 93 | T93V | ACg | GTg | 13 | 14 | All | 0.000002 |
ORF1ab/nsp16 | 93 | T93V | ACG | GTA | 1 | 14 | All | 0 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 14 | 14 | AY.53 | 0.004025 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 11 | 14 | B.1.1 | 0.0002 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 3 | 14 | B.1.1 | 0.000054 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 14 | 14 | B.1.1.207 | 0.016548 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 13 | 14 | B.1.526 | 0.000306 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 14 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 12 | 13 | AY.118 | 0.000752 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 13 | AY.118 | 0.000063 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 13 | 13 | AY.64 | 0.007738 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 10 | 13 | AY.74 | 0.001156 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 3 | 13 | AY.74 | 0.000347 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 13 | 13 | AY.78 | 0.020031 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 12 | 12 | AY.106 | 0.004019 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 12 | 12 | AY.113 | 0.001709 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 9 | 12 | AY.3 | 0.00009 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 3 | 12 | AY.3 | 0.00003 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 11 | 11 | AY.11 | 0.014726 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 9 | 11 | AY.4.2 | 0.000195 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 11 | AY.4.2 | 0.000043 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 10 | 10 | AY.4.3 | 0.008418 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp16 | 93 | T93S | Acg | Tcg | 9 | 9 | All | 0.000002 |
ORF1ab/nsp16 | 93 | T93I | aCG | aTT | 6 | 9 | All | 0.000001 |
ORF1ab/nsp16 | 93 | T93I | aCG | aTA | 3 | 9 | All | 0.000001 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 9 | 9 | AY.10 | 0.004769 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 5 | 9 | AY.116 | 0.001434 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 4 | 9 | AY.116 | 0.001147 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 8 | 9 | B.1.160 | 0.00025 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 1 | 9 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 5 | 9 | B.1.258 | 0.000333 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 4 | 9 | B.1.258 | 0.000266 |
ORF1ab/nsp16 | 93 | T93V | ACg | GTg | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 8 | 8 | AY.46.1 | 0.008214 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 7 | 8 | AY.95 | 0.005327 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 8 | AY.95 | 0.000761 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 8 | 8 | B.1.36.1 | 0.009122 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 8 | 8 | B.1.409 | 0.00625 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 5 | 7 | AY.100 | 0.00023 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 2 | 7 | AY.100 | 0.000092 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 7 | 7 | AY.110 | 0.000789 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 6 | 7 | AY.114 | 0.001387 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 7 | AY.114 | 0.000231 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 7 | 7 | AY.2 | 0.002493 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 7 | 7 | AY.59 | 0.003708 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 7 | 7 | AY.67 | 0.00325 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 7 | 7 | AY.82 | 0.009498 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 7 | 7 | B.1.1.25 | 0.00398 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 7 | 7 | B.1.561 | 0.002779 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 6 | 6 | AY.77 | 0.006764 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 6 | 6 | AY.87 | 0.004996 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 6 | 6 | AY.99.1 | 0.009317 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 5 | 6 | B.1.234 | 0.00066 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 6 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 5 | 6 | B.1.429 | 0.000118 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 6 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 6 | 6 | B.1.495 | 0.054545 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 4 | 5 | AY.39.1 | 0.000158 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 5 | AY.39.1 | 0.00004 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 4 | 5 | AY.4.4 | 0.001637 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 5 | AY.4.4 | 0.000409 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 5 | 5 | AY.66 | 0.005348 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 4 | 5 | AY.9.2 | 0.000147 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 5 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 5 | 5 | AY.96 | 0.010373 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 4 | 5 | B | 0.000511 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 1 | 5 | B | 0.000128 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 5 | 5 | B.1.1.374 | 0.011876 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 4 | 4 | AY.52 | 0.003257 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 4 | 4 | AY.87 | 0.003331 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 3 | 4 | B.1.177 | 0.00004 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 4 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 3 | 4 | B.1.351.3 | 0.002629 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 4 | B.1.351.3 | 0.000876 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 2 | 4 | B.1.617.1 | 0.000258 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 4 | B.1.617.1 | 0.000258 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 3 | 4 | C.37 | 0.000348 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 4 | C.37 | 0.000116 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp16 | 93 | T93del1 | aCg | a-g | 2 | 3 | All | 0 |
ORF1ab/nsp16 | 93 | T93del1 | acG | ac- | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp16 | 93 | T93S | Acg | Tcg | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 3 | 3 | AY.60 | 0.002814 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 3 | 3 | AY.90 | 0.002053 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 3 | AY.99.2 | 0.000184 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 3 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 3 | 3 | B.1.1.178 | 0.125 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp16 | 93 | T93V | ACg | GTg | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 93 | T93V | ACG | GTA | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 93 | T93A | AcG | GcA | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 93 | T93P | Acg | Ccg | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp16 | 93 | T93I | aCG | aTT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | AY.39.1.1 | 0.001449 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.1.224 | 0.028571 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.1.357 | 0.25 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp16 | 93 | T93V | ACg | GTg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 2 | 2 | B.1.403 | 0.006536 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 2 | 2 | B.1.469 | 0.00722 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp16 | 93 | T93I | aCG | aTT | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 93 | T93S | Acg | Tcg | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 2 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 1 | 2 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 2 | R.1 | 0.00009 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 2 | R.1 | 0.00009 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 93 | T93I | aCG | aTA | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 93 | T93S | Acg | Tcg | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp16 | 93 | T93K | aCg | aAg | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 93 | T93Y | ACG | TAC | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 93 | T93del2 | ACg | --g | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 93 | T93R | aCg | aGg | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 93 | T93V | ACg | GTg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 93 | T93del1 | aCg | a-g | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 93 | T93K | aCg | aAg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 93 | T93P | Acg | Ccg | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 93 | T93Y | ACG | TAC | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp16 | 93 | T93S | Acg | Tcg | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 93 | T93I | aCG | aTT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 93 | T93del1 | acG | ac- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp16 | 93 | T93S | Acg | Tcg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 93 | T93I | aCG | aTA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 93 | T93del1 | aCg | a-g | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp16 | 93 | T93I | aCG | aTT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.516 | 0.066667 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp16 | 93 | T93R | aCg | aGg | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp16 | 93 | T93del2 | ACg | --g | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 93 | T93S | Acg | Tcg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 93 | T93I | aCG | aTA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 93 | T93V | ACg | GTg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp16 | 93 | T93del | ACG | --- | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp16 | 93 | T93T | acG | acC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp16 | 93 | T93T | acG | acT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp16 | 93 | T93P | Acg | Ccg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | Q.6 | 0.006623 |
ORF1ab/nsp16 | 93 | T93T | acG | acA | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp16 | 93 | T93A | Acg | Gcg | 1 | 1 | S.1 | 0.00495 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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