CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 93

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1693T93TT6891TsynacGacT34981343740.98264820935-20937
ORF1ab/nsp1693T93TT6891TsynacGacA349815830.016666220935-20937
ORF1ab/nsp1693T93TT6891TsynacGacC34981240.00068608720935-20937
ORF1ab/nsp1693T93MT6891MnonsynaCgaTg13671367120935-20937
ORF1ab/nsp1693T93AT6891AnonsynAcgGcg120712050.99834320935-20937
ORF1ab/nsp1693T93AT6891AnonsynAcGGcC120710.000828520935-20937
ORF1ab/nsp1693T93AT6891AnonsynAcGGcA120710.000828520935-20937
ORF1ab/nsp1693T93delT6891deldelACG---2424120935-20937
ORF1ab/nsp1693T93VT6891VnonsynACgGTg14130.92857120935-20937
ORF1ab/nsp1693T93VT6891VnonsynACGGTA1410.071428620935-20937
ORF1ab/nsp1693T93ST6891SnonsynAcgTcg99120935-20937
ORF1ab/nsp1693T93IT6891InonsynaCGaTT960.66666720935-20937
ORF1ab/nsp1693T93IT6891InonsynaCGaTA930.33333320935-20937
ORF1ab/nsp1693T93del1T6891del1delaCga-g320.66666720935-20937
ORF1ab/nsp1693T93del1T6891del1delacGac-310.33333320935-20937
ORF1ab/nsp1693T93PT6891PnonsynAcgCcg22120935-20937
ORF1ab/nsp1693T93RT6891RnonsynaCgaGg11120935-20937
ORF1ab/nsp1693T93del2T6891del2delACg--g11120935-20937
ORF1ab/nsp1693T93YT6891YnonsynACGTAC11120935-20937
ORF1ab/nsp1693T93KT6891KnonsynaCgaAg11120935-20937

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1693T93TacGacT3437434981All0.006574
ORF1ab/nsp1693T93TacGacA58334981All0.000112
ORF1ab/nsp1693T93TacGacC2434981All0.000005
ORF1ab/nsp1693T93TacGacT1653616573B.1.617.20.062265
ORF1ab/nsp1693T93TacGacA3616573B.1.617.20.000136
ORF1ab/nsp1693T93TacGacC116573B.1.617.20.000004
ORF1ab/nsp1693T93TacGacT1032410329AY.430.04574
ORF1ab/nsp1693T93TacGacA410329AY.430.000018
ORF1ab/nsp1693T93TacGacC110329AY.430.000004
ORF1ab/nsp1693T93TacGacT31113111AY.120.983249
ORF1ab/nsp1693T93MaCgaTg13671367All0.000261
ORF1ab/nsp1693T93AAcgGcg12051207All0.00023
ORF1ab/nsp1693T93AAcGGcA11207All0
ORF1ab/nsp1693T93AAcGGcC11207All0
ORF1ab/nsp1693T93TacGacT833844AY.440.00507
ORF1ab/nsp1693T93TacGacA11844AY.440.000067
ORF1ab/nsp1693T93TacGacT603604AY.390.014901
ORF1ab/nsp1693T93TacGacA1604AY.390.000025
ORF1ab/nsp1693T93AAcgGcg411411AY.4.20.008914
ORF1ab/nsp1693T93TacGacT375377AY.460.03903
ORF1ab/nsp1693T93TacGacA2377AY.460.000208
ORF1ab/nsp1693T93TacGacT347358AY.1020.0092
ORF1ab/nsp1693T93TacGacA11358AY.1020.000292
ORF1ab/nsp1693T93MaCgaTg340340B.1.617.10.043848
ORF1ab/nsp1693T93AAcgGcg291291AY.60.011968
ORF1ab/nsp1693T93TacGacT215259B.1.1.70.000192
ORF1ab/nsp1693T93TacGacA43259B.1.1.70.000038
ORF1ab/nsp1693T93TacGacC1259B.1.1.70.000001
ORF1ab/nsp1693T93AAcgGcg211211AY.40.000328
ORF1ab/nsp1693T93TacGacT179180AY.5.40.04953
ORF1ab/nsp1693T93TacGacA1180AY.5.40.000277
ORF1ab/nsp1693T93TacGacA129157AY.330.008614
ORF1ab/nsp1693T93TacGacT28157AY.330.00187
ORF1ab/nsp1693T93TacGacT110129AY.1030.000683
ORF1ab/nsp1693T93TacGacA19129AY.1030.000118
ORF1ab/nsp1693T93TacGacT123123AY.34.10.062723
ORF1ab/nsp1693T93MaCgaTg123123B.1.1.70.00011
ORF1ab/nsp1693T93MaCgaTg120120AY.40.000187
ORF1ab/nsp1693T93MaCgaTg114114B.1.1.2650.359621
ORF1ab/nsp1693T93TacGacT112112AY.450.013629
ORF1ab/nsp1693T93TacGacT9899AY.1170.008283
ORF1ab/nsp1693T93TacGacA199AY.1170.000085
ORF1ab/nsp1693T93TacGacA7987AY.680.021626
ORF1ab/nsp1693T93TacGacT887AY.680.00219
ORF1ab/nsp1693T93TacGacT8585AY.840.037183
ORF1ab/nsp1693T93TacGacA6670B.1.20.000581
ORF1ab/nsp1693T93TacGacT470B.1.20.000035
ORF1ab/nsp1693T93TacGacT6566AY.1190.002295
ORF1ab/nsp1693T93TacGacA166AY.1190.000035
ORF1ab/nsp1693T93AAcgGcg6566B.1.617.20.000245
ORF1ab/nsp1693T93AAcGGcC166B.1.617.20.000004
ORF1ab/nsp1693T93TacGacT5151AY.880.045093
ORF1ab/nsp1693T93MaCgaTg5151B.10.000467
ORF1ab/nsp1693T93TacGacT4250AY.250.000253
ORF1ab/nsp1693T93TacGacA850AY.250.000048
ORF1ab/nsp1693T93TacGacT4646AY.990.048269
ORF1ab/nsp1693T93TacGacT2645AY.40.00004
ORF1ab/nsp1693T93TacGacA1945AY.40.00003
ORF1ab/nsp1693T93TacGacT4444AY.580.039927
ORF1ab/nsp1693T93MaCgaTg4343B.1.3510.001278
ORF1ab/nsp1693T93TacGacT3941AY.5.30.013158
ORF1ab/nsp1693T93TacGacA241AY.5.30.000675
ORF1ab/nsp1693T93TacGacT4040AY.230.00279
ORF1ab/nsp1693T93TacGacT3939AY.320.020767
ORF1ab/nsp1693T93TacGacT3535AY.1050.022508
ORF1ab/nsp1693T93TacGacT3435AY.50.000702
ORF1ab/nsp1693T93TacGacA135AY.50.000021
ORF1ab/nsp1693T93MaCgaTg3232B.1.1.5190.001271
ORF1ab/nsp1693T93TacGacT3131AY.1110.005678
ORF1ab/nsp1693T93MaCgaTg3131AY.420.001247
ORF1ab/nsp1693T93TacGacT2731B.10.000247
ORF1ab/nsp1693T93TacGacA331B.10.000027
ORF1ab/nsp1693T93TacGacC131B.10.000009
ORF1ab/nsp1693T93TacGacT2929AY.190.033067
ORF1ab/nsp1693T93TacGacT2929AY.46.60.002094
ORF1ab/nsp1693T93TacGacT2829AY.980.002212
ORF1ab/nsp1693T93TacGacA129AY.980.000079
ORF1ab/nsp1693T93AAcgGcg2929B.1.1600.000904
ORF1ab/nsp1693T93MaCgaTg2929B.1.5650.023501
ORF1ab/nsp1693T93TacGacT2929Q.10.003663
ORF1ab/nsp1693T93TacGacT2828AY.1080.030871
ORF1ab/nsp1693T93AAcgGcg2828B.1.1.70.000025
ORF1ab/nsp1693T93MaCgaTg2828B.1.617.20.000105
ORF1ab/nsp1693T93MaCgaTg2828P.20.005226
ORF1ab/nsp1693T93AAcgGcg2626AY.390.000642
ORF1ab/nsp1693T93MaCgaTg2626AY.440.000158
ORF1ab/nsp1693T93TacGacT2626AY.920.007469
ORF1ab/nsp1693T93TacGacT2525AY.560.040128
ORF1ab/nsp1693T93delACG---2424All0.000005
ORF1ab/nsp1693T93TacGacT2424AY.890.117647
ORF1ab/nsp1693T93MaCgaTg2323AY.4.20.000499
ORF1ab/nsp1693T93TacGacT2222AY.420.000885
ORF1ab/nsp1693T93TacGacT2122AY.46.20.013342
ORF1ab/nsp1693T93TacGacA122AY.46.20.000635
ORF1ab/nsp1693T93MaCgaTg2121B.1.10.000381
ORF1ab/nsp1693T93MaCgaTg2020B.1.4290.000471
ORF1ab/nsp1693T93TacGacA1919A.2.50.009481
ORF1ab/nsp1693T93TacGacT1717AY.1210.0023
ORF1ab/nsp1693T93TacGacT1717AY.140.001496
ORF1ab/nsp1693T93TacGacT1317AY.200.000505
ORF1ab/nsp1693T93TacGacA417AY.200.000155
ORF1ab/nsp1693T93TacGacT1617AY.470.000498
ORF1ab/nsp1693T93TacGacA117AY.470.000031
ORF1ab/nsp1693T93TacGacT1717AY.98.10.000823
ORF1ab/nsp1693T93TacGacT1317P.10.000205
ORF1ab/nsp1693T93TacGacA317P.10.000047
ORF1ab/nsp1693T93TacGacC117P.10.000016
ORF1ab/nsp1693T93MaCgaTg1616AY.430.000071
ORF1ab/nsp1693T93MaCgaTg1616AY.80.009697
ORF1ab/nsp1693T93MaCgaTg1616B.1.1.3370.057554
ORF1ab/nsp1693T93MaCgaTg1616B.1.1770.000211
ORF1ab/nsp1693T93AAcgGcg1515AY.1020.000398
ORF1ab/nsp1693T93TacGacT1515B.1.1.3710.15625
ORF1ab/nsp1693T93TacGacT1515B.400.005464
ORF1ab/nsp1693T93VACgGTg1314All0.000002
ORF1ab/nsp1693T93VACGGTA114All0
ORF1ab/nsp1693T93TacGacT1414AY.530.004025
ORF1ab/nsp1693T93TacGacA1114B.1.10.0002
ORF1ab/nsp1693T93TacGacT314B.1.10.000054
ORF1ab/nsp1693T93MaCgaTg1414B.1.1.2070.016548
ORF1ab/nsp1693T93TacGacA1314B.1.5260.000306
ORF1ab/nsp1693T93TacGacT114B.1.5260.000024
ORF1ab/nsp1693T93TacGacT1213AY.1180.000752
ORF1ab/nsp1693T93TacGacA113AY.1180.000063
ORF1ab/nsp1693T93TacGacT1313AY.640.007738
ORF1ab/nsp1693T93TacGacT1013AY.740.001156
ORF1ab/nsp1693T93TacGacA313AY.740.000347
ORF1ab/nsp1693T93TacGacT1313AY.780.020031
ORF1ab/nsp1693T93AAcgGcg1212AY.1030.000075
ORF1ab/nsp1693T93MaCgaTg1212AY.1030.000075
ORF1ab/nsp1693T93TacGacT1212AY.1060.004019
ORF1ab/nsp1693T93TacGacT1212AY.1130.001709
ORF1ab/nsp1693T93TacGacA912AY.30.00009
ORF1ab/nsp1693T93TacGacT312AY.30.00003
ORF1ab/nsp1693T93TacGacT1111AY.110.014726
ORF1ab/nsp1693T93TacGacA911AY.4.20.000195
ORF1ab/nsp1693T93TacGacT211AY.4.20.000043
ORF1ab/nsp1693T93TacGacT1010AY.4.30.008418
ORF1ab/nsp1693T93AAcgGcg1010B.10.000092
ORF1ab/nsp1693T93MaCgaTg1010B.1.2210.00071
ORF1ab/nsp1693T93SAcgTcg99All0.000002
ORF1ab/nsp1693T93IaCGaTT69All0.000001
ORF1ab/nsp1693T93IaCGaTA39All0.000001
ORF1ab/nsp1693T93TacGacT99AY.100.004769
ORF1ab/nsp1693T93TacGacT59AY.1160.001434
ORF1ab/nsp1693T93TacGacA49AY.1160.001147
ORF1ab/nsp1693T93MaCgaTg99AY.200.00035
ORF1ab/nsp1693T93MaCgaTg99AY.250.000054
ORF1ab/nsp1693T93AAcgGcg99AY.250.000054
ORF1ab/nsp1693T93MaCgaTg99AY.30.00009
ORF1ab/nsp1693T93AAcgGcg99AY.440.000055
ORF1ab/nsp1693T93AAcgGcg99B.1.1.5190.000357
ORF1ab/nsp1693T93TacGacT89B.1.1600.00025
ORF1ab/nsp1693T93TacGacC19B.1.1600.000031
ORF1ab/nsp1693T93TacGacT59B.1.2580.000333
ORF1ab/nsp1693T93TacGacA49B.1.2580.000266
ORF1ab/nsp1693T93VACgGTg88AY.40.000012
ORF1ab/nsp1693T93TacGacT88AY.46.10.008214
ORF1ab/nsp1693T93TacGacT78AY.950.005327
ORF1ab/nsp1693T93TacGacA18AY.950.000761
ORF1ab/nsp1693T93TacGacA88B.1.1.5190.000318
ORF1ab/nsp1693T93TacGacT88B.1.36.10.009122
ORF1ab/nsp1693T93MaCgaTg88B.1.4090.00625
ORF1ab/nsp1693T93TacGacT88P.20.001493
ORF1ab/nsp1693T93TacGacT57AY.1000.00023
ORF1ab/nsp1693T93TacGacA27AY.1000.000092
ORF1ab/nsp1693T93TacGacT77AY.1100.000789
ORF1ab/nsp1693T93TacGacT67AY.1140.001387
ORF1ab/nsp1693T93TacGacA17AY.1140.000231
ORF1ab/nsp1693T93TacGacT77AY.1200.00026
ORF1ab/nsp1693T93MaCgaTg77AY.1200.00026
ORF1ab/nsp1693T93TacGacA77AY.20.002493
ORF1ab/nsp1693T93TacGacT77AY.590.003708
ORF1ab/nsp1693T93TacGacT77AY.670.00325
ORF1ab/nsp1693T93TacGacT77AY.820.009498
ORF1ab/nsp1693T93AAcgGcg77B.1.10.000127
ORF1ab/nsp1693T93TacGacC77B.1.1.250.00398
ORF1ab/nsp1693T93TacGacT77B.1.1.330.002946
ORF1ab/nsp1693T93AAcgGcg77B.1.258.170.000728
ORF1ab/nsp1693T93MaCgaTg77B.1.5610.002779
ORF1ab/nsp1693T93MaCgaTg77P.10.00011
ORF1ab/nsp1693T93AAcgGcg66AY.430.000027
ORF1ab/nsp1693T93TacGacT66AY.770.006764
ORF1ab/nsp1693T93TacGacT66AY.870.004996
ORF1ab/nsp1693T93TacGacT66AY.99.10.009317
ORF1ab/nsp1693T93TacGacA56B.1.2340.00066
ORF1ab/nsp1693T93TacGacT16B.1.2340.000132
ORF1ab/nsp1693T93TacGacA56B.1.4290.000118
ORF1ab/nsp1693T93TacGacT16B.1.4290.000024
ORF1ab/nsp1693T93AAcgGcg66B.1.4950.054545
ORF1ab/nsp1693T93MaCgaTg66B.1.5260.000141
ORF1ab/nsp1693T93MaCgaTg66R.10.00054
ORF1ab/nsp1693T93AAcgGcg55AY.360.000741
ORF1ab/nsp1693T93TacGacT45AY.39.10.000158
ORF1ab/nsp1693T93TacGacA15AY.39.10.00004
ORF1ab/nsp1693T93TacGacT45AY.4.40.001637
ORF1ab/nsp1693T93TacGacA15AY.4.40.000409
ORF1ab/nsp1693T93MaCgaTg55AY.4.50.000537
ORF1ab/nsp1693T93MaCgaTg55AY.660.005348
ORF1ab/nsp1693T93TacGacT55AY.90.000338
ORF1ab/nsp1693T93TacGacT45AY.9.20.000147
ORF1ab/nsp1693T93TacGacA15AY.9.20.000037
ORF1ab/nsp1693T93TacGacT55AY.960.010373
ORF1ab/nsp1693T93TacGacT45B0.000511
ORF1ab/nsp1693T93TacGacC15B0.000128
ORF1ab/nsp1693T93TacGacT55B.1.1.2140.000277
ORF1ab/nsp1693T93TacGacT55B.1.1.3740.011876
ORF1ab/nsp1693T93delACG---55B.1.1.70.000004
ORF1ab/nsp1693T93MaCgaTg55B.1.2430.000348
ORF1ab/nsp1693T93MaCgaTg55B.1.4270.000252
ORF1ab/nsp1693T93delACG---440.222222
ORF1ab/nsp1693T93MaCgaTg44AY.330.000267
ORF1ab/nsp1693T93TacGacT44AY.520.003257
ORF1ab/nsp1693T93TacGacT44AY.80.002424
ORF1ab/nsp1693T93AAcgGcg44AY.870.003331
ORF1ab/nsp1693T93TacGacA34B.1.1770.00004
ORF1ab/nsp1693T93TacGacT14B.1.1770.000013
ORF1ab/nsp1693T93TacGacC34B.1.351.30.002629
ORF1ab/nsp1693T93TacGacT14B.1.351.30.000876
ORF1ab/nsp1693T93TacGacA24B.1.617.10.000258
ORF1ab/nsp1693T93TacGacT24B.1.617.10.000258
ORF1ab/nsp1693T93TacGacC34C.370.000348
ORF1ab/nsp1693T93TacGacT14C.370.000116
ORF1ab/nsp1693T93MaCgaTg44D.20.0003
ORF1ab/nsp1693T93del1aCga-g23All0
ORF1ab/nsp1693T93del1acGac-13All0
ORF1ab/nsp1693T93TacGacA33AY.1070.001398
ORF1ab/nsp1693T93AAcgGcg33AY.1170.000254
ORF1ab/nsp1693T93AAcgGcg33AY.1180.000188
ORF1ab/nsp1693T93MaCgaTg33AY.1190.000106
ORF1ab/nsp1693T93MaCgaTg33AY.260.000085
ORF1ab/nsp1693T93MaCgaTg33AY.290.000047
ORF1ab/nsp1693T93AAcgGcg33AY.30.00003
ORF1ab/nsp1693T93MaCgaTg33AY.3.10.000256
ORF1ab/nsp1693T93TacGacT33AY.340.000291
ORF1ab/nsp1693T93SAcgTcg33AY.40.000005
ORF1ab/nsp1693T93TacGacT33AY.4.2.10.000447
ORF1ab/nsp1693T93TacGacT33AY.570.001969
ORF1ab/nsp1693T93TacGacT33AY.60.000123
ORF1ab/nsp1693T93TacGacT33AY.600.002814
ORF1ab/nsp1693T93TacGacT33AY.900.002053
ORF1ab/nsp1693T93TacGacT23AY.99.20.000184
ORF1ab/nsp1693T93TacGacA13AY.99.20.000092
ORF1ab/nsp1693T93TacGacT33B.1.1.1780.125
ORF1ab/nsp1693T93MaCgaTg33B.1.1.2220.000612
ORF1ab/nsp1693T93MaCgaTg33B.1.1600.000094
ORF1ab/nsp1693T93MaCgaTg33B.1.20.000026
ORF1ab/nsp1693T93MaCgaTg33B.1.5250.000339
ORF1ab/nsp1693T93MaCgaTg33B.1.5750.00091
ORF1ab/nsp1693T93MaCgaTg33B.1.5960.000261
ORF1ab/nsp1693T93MaCgaTg33C.36.30.001702
ORF1ab/nsp1693T93TacGacT33P.1.140.000143
ORF1ab/nsp1693T93delACG---33P.1.150.000697
ORF1ab/nsp1693T93VACgGTg120.055556
ORF1ab/nsp1693T93VACGGTA120.055556
ORF1ab/nsp1693T93AAcGGcA120.055556
ORF1ab/nsp1693T93AAcgGcg120.055556
ORF1ab/nsp1693T93PAcgCcg22All0
ORF1ab/nsp1693T93MaCgaTg22AY.10.000791
ORF1ab/nsp1693T93TacGacT22AY.1010.000981
ORF1ab/nsp1693T93MaCgaTg22AY.1180.000125
ORF1ab/nsp1693T93IaCGaTT22AY.120.000632
ORF1ab/nsp1693T93delACG---22AY.1200.000074
ORF1ab/nsp1693T93TacGacA22AY.3.10.000171
ORF1ab/nsp1693T93MaCgaTg22AY.390.000049
ORF1ab/nsp1693T93TacGacT22AY.39.1.10.001449
ORF1ab/nsp1693T93TacGacT22AY.400.001929
ORF1ab/nsp1693T93TacGacT22AY.410.000588
ORF1ab/nsp1693T93MaCgaTg22AY.450.000243
ORF1ab/nsp1693T93MaCgaTg22AY.460.000208
ORF1ab/nsp1693T93TacGacT22AY.46.50.000397
ORF1ab/nsp1693T93MaCgaTg22AY.46.60.000144
ORF1ab/nsp1693T93TacGacT22AY.480.00093
ORF1ab/nsp1693T93MaCgaTg22AY.50.000041
ORF1ab/nsp1693T93AAcgGcg22AY.50.000041
ORF1ab/nsp1693T93TacGacT22AY.500.001599
ORF1ab/nsp1693T93TacGacT22AY.610.00021
ORF1ab/nsp1693T93MaCgaTg22AY.620.000871
ORF1ab/nsp1693T93TacGacT22AY.620.000871
ORF1ab/nsp1693T93TacGacT22AY.700.000417
ORF1ab/nsp1693T93TacGacT22AY.750.000112
ORF1ab/nsp1693T93MaCgaTg22AY.940.000885
ORF1ab/nsp1693T93MaCgaTg22AY.980.000158
ORF1ab/nsp1693T93MaCgaTg22B.1.1.2240.028571
ORF1ab/nsp1693T93MaCgaTg22B.1.1.250.001137
ORF1ab/nsp1693T93TacGacA22B.1.1.3260.003521
ORF1ab/nsp1693T93MaCgaTg22B.1.1.330.000842
ORF1ab/nsp1693T93MaCgaTg22B.1.1.3570.25
ORF1ab/nsp1693T93MaCgaTg22B.1.160.160.001859
ORF1ab/nsp1693T93MaCgaTg22B.1.177.520.003515
ORF1ab/nsp1693T93AAcgGcg22B.1.177.620.002384
ORF1ab/nsp1693T93MaCgaTg22B.1.177.70.00033
ORF1ab/nsp1693T93VACgGTg22B.1.20.000018
ORF1ab/nsp1693T93MaCgaTg22B.1.2140.007326
ORF1ab/nsp1693T93MaCgaTg22B.1.2400.000431
ORF1ab/nsp1693T93MaCgaTg22B.1.2410.001623
ORF1ab/nsp1693T93TacGacA12B.1.3510.00003
ORF1ab/nsp1693T93TacGacC12B.1.3510.00003
ORF1ab/nsp1693T93MaCgaTg22B.1.36.160.002849
ORF1ab/nsp1693T93TacGacT22B.1.36.290.001035
ORF1ab/nsp1693T93MaCgaTg22B.1.36.360.001204
ORF1ab/nsp1693T93MaCgaTg22B.1.4000.000858
ORF1ab/nsp1693T93AAcgGcg22B.1.4030.006536
ORF1ab/nsp1693T93TacGacT22B.1.4690.00722
ORF1ab/nsp1693T93AAcgGcg22B.1.5960.000174
ORF1ab/nsp1693T93IaCGaTT22B.1.617.20.000008
ORF1ab/nsp1693T93SAcgTcg22B.1.6210.000177
ORF1ab/nsp1693T93TacGacA12B.1.6210.000089
ORF1ab/nsp1693T93TacGacC12B.1.6210.000089
ORF1ab/nsp1693T93AAcgGcg22C.370.000232
ORF1ab/nsp1693T93TacGacT12R.10.00009
ORF1ab/nsp1693T93TacGacA12R.10.00009
ORF1ab/nsp1693T93MaCgaTg110.055556
ORF1ab/nsp1693T93TacGacA110.055556
ORF1ab/nsp1693T93IaCGaTA110.055556
ORF1ab/nsp1693T93SAcgTcg11A.2.40.003367
ORF1ab/nsp1693T93TacGacA11A.2.40.003367
ORF1ab/nsp1693T93AAcgGcg11A.2.50.000499
ORF1ab/nsp1693T93TacGacA11A.2.5.30.010309
ORF1ab/nsp1693T93KaCgaAg11All0
ORF1ab/nsp1693T93YACGTAC11All0
ORF1ab/nsp1693T93del2ACg--g11All0
ORF1ab/nsp1693T93RaCgaGg11All0
ORF1ab/nsp1693T93AAcgGcg11AP.10.001502
ORF1ab/nsp1693T93TacGacT11AY.10.000396
ORF1ab/nsp1693T93MaCgaTg11AY.1020.000027
ORF1ab/nsp1693T93VACgGTg11AY.1030.000006
ORF1ab/nsp1693T93del1aCga-g11AY.1030.000006
ORF1ab/nsp1693T93MaCgaTg11AY.1100.000113
ORF1ab/nsp1693T93KaCgaAg11AY.1200.000037
ORF1ab/nsp1693T93PAcgCcg11AY.120.10.000321
ORF1ab/nsp1693T93TacGacT11AY.120.10.000321
ORF1ab/nsp1693T93YACGTAC11AY.120.10.000321
ORF1ab/nsp1693T93MaCgaTg11AY.120.2.10.000498
ORF1ab/nsp1693T93MaCgaTg11AY.1210.000135
ORF1ab/nsp1693T93TacGacT11AY.130.000161
ORF1ab/nsp1693T93TacGacT11AY.160.00038
ORF1ab/nsp1693T93MaCgaTg11AY.16.10.00047
ORF1ab/nsp1693T93AAcgGcg11AY.200.000039
ORF1ab/nsp1693T93TacGacT11AY.210.001898
ORF1ab/nsp1693T93AAcgGcg11AY.230.00007
ORF1ab/nsp1693T93MaCgaTg11AY.230.00007
ORF1ab/nsp1693T93MaCgaTg11AY.23.10.000417
ORF1ab/nsp1693T93TacGacT11AY.240.000431
ORF1ab/nsp1693T93AAcgGcg11AY.240.000431
ORF1ab/nsp1693T93delACG---11AY.250.000006
ORF1ab/nsp1693T93TacGacT11AY.260.000028
ORF1ab/nsp1693T93TacGacA11AY.270.000065
ORF1ab/nsp1693T93delACG---11AY.330.000067
ORF1ab/nsp1693T93MaCgaTg11AY.340.000097
ORF1ab/nsp1693T93AAcgGcg11AY.34.10.00051
ORF1ab/nsp1693T93TacGacT11AY.360.000148
ORF1ab/nsp1693T93SAcgTcg11AY.39.1.10.000725
ORF1ab/nsp1693T93MaCgaTg11AY.4.2.10.000149
ORF1ab/nsp1693T93delACG---11AY.4.50.000107
ORF1ab/nsp1693T93IaCGaTT11AY.430.000004
ORF1ab/nsp1693T93del1acGac-11AY.440.000006
ORF1ab/nsp1693T93AAcgGcg11AY.460.000104
ORF1ab/nsp1693T93MaCgaTg11AY.46.20.000635
ORF1ab/nsp1693T93MaCgaTg11AY.470.000031
ORF1ab/nsp1693T93AAcgGcg11AY.470.000031
ORF1ab/nsp1693T93TacGacT11AY.490.003195
ORF1ab/nsp1693T93TacGacT11AY.540.000095
ORF1ab/nsp1693T93AAcgGcg11AY.550.000917
ORF1ab/nsp1693T93MaCgaTg11AY.60.000041
ORF1ab/nsp1693T93AAcgGcg11AY.610.000105
ORF1ab/nsp1693T93TacGacT11AY.70.000196
ORF1ab/nsp1693T93TacGacT11AY.7.20.000559
ORF1ab/nsp1693T93TacGacA11AY.710.000475
ORF1ab/nsp1693T93AAcgGcg11AY.740.000116
ORF1ab/nsp1693T93AAcgGcg11AY.750.000056
ORF1ab/nsp1693T93TacGacT11AY.75.10.00018
ORF1ab/nsp1693T93TacGacT11AY.850.000427
ORF1ab/nsp1693T93TacGacT11AY.860.00083
ORF1ab/nsp1693T93TacGacT11AY.910.00073
ORF1ab/nsp1693T93TacGacT11AY.930.000273
ORF1ab/nsp1693T93TacGacT11AY.970.001701
ORF1ab/nsp1693T93MaCgaTg11AY.98.10.000048
ORF1ab/nsp1693T93MaCgaTg11AY.99.20.000092
ORF1ab/nsp1693T93MaCgaTg11AZ.50.003509
ORF1ab/nsp1693T93SAcgTcg11B0.000128
ORF1ab/nsp1693T93MaCgaTg11B0.000128
ORF1ab/nsp1693T93AAcgGcg11B0.000128
ORF1ab/nsp1693T93IaCGaTA11B.10.000009
ORF1ab/nsp1693T93delACG---11B.10.000009
ORF1ab/nsp1693T93del1aCga-g11B.10.000009
ORF1ab/nsp1693T93MaCgaTg11B.1.1.100.001115
ORF1ab/nsp1693T93TacGacT11B.1.1.1920.002309
ORF1ab/nsp1693T93TacGacT11B.1.1.2100.005714
ORF1ab/nsp1693T93MaCgaTg11B.1.1.2160.00089
ORF1ab/nsp1693T93MaCgaTg11B.1.1.2410.00207
ORF1ab/nsp1693T93IaCGaTT11B.1.1.250.000569
ORF1ab/nsp1693T93MaCgaTg11B.1.1.2580.003257
ORF1ab/nsp1693T93TacGacA11B.1.1.2790.001121
ORF1ab/nsp1693T93TacGacT11B.1.1.280.000311
ORF1ab/nsp1693T93MaCgaTg11B.1.1.2840.000107
ORF1ab/nsp1693T93MaCgaTg11B.1.1.3180.000302
ORF1ab/nsp1693T93TacGacA11B.1.1.3180.000302
ORF1ab/nsp1693T93MaCgaTg11B.1.1.3220.008772
ORF1ab/nsp1693T93MaCgaTg11B.1.1.3480.000796
ORF1ab/nsp1693T93MaCgaTg11B.1.1.3690.000446
ORF1ab/nsp1693T93AAcgGcg11B.1.1.3980.003226
ORF1ab/nsp1693T93MaCgaTg11B.1.1.4340.000349
ORF1ab/nsp1693T93AAcgGcg11B.1.1.4340.000349
ORF1ab/nsp1693T93MaCgaTg11B.1.1.4640.001473
ORF1ab/nsp1693T93MaCgaTg11B.1.1.5160.066667
ORF1ab/nsp1693T93MaCgaTg11B.1.1.560.017857
ORF1ab/nsp1693T93RaCgaGg11B.1.1.610.008772
ORF1ab/nsp1693T93AAcgGcg11B.1.1.630.000386
ORF1ab/nsp1693T93del2ACg--g11B.1.1.70.000001
ORF1ab/nsp1693T93MaCgaTg11B.1.1.700.000341
ORF1ab/nsp1693T93MaCgaTg11B.1.1280.000635
ORF1ab/nsp1693T93TacGacA11B.1.1280.000635
ORF1ab/nsp1693T93MaCgaTg11B.1.1470.000756
ORF1ab/nsp1693T93TacGacT11B.1.160.230.004831
ORF1ab/nsp1693T93delACG---11B.1.1610.017241
ORF1ab/nsp1693T93AAcgGcg11B.1.1770.000013
ORF1ab/nsp1693T93TacGacT11B.1.177.210.000076
ORF1ab/nsp1693T93MaCgaTg11B.1.177.40.000211
ORF1ab/nsp1693T93MaCgaTg11B.1.177.430.001477
ORF1ab/nsp1693T93MaCgaTg11B.1.177.600.000218
ORF1ab/nsp1693T93delACG---11B.1.177.620.001192
ORF1ab/nsp1693T93MaCgaTg11B.1.177.810.000189
ORF1ab/nsp1693T93TacGacA11B.1.177.820.000477
ORF1ab/nsp1693T93MaCgaTg11B.1.177.820.000477
ORF1ab/nsp1693T93AAcgGcg11B.1.20.000009
ORF1ab/nsp1693T93SAcgTcg11B.1.20.000009
ORF1ab/nsp1693T93MaCgaTg11B.1.2110.025
ORF1ab/nsp1693T93AAcgGcg11B.1.221.10.002907
ORF1ab/nsp1693T93MaCgaTg11B.1.2340.000132
ORF1ab/nsp1693T93MaCgaTg11B.1.2390.001221
ORF1ab/nsp1693T93MaCgaTg11B.1.243.10.022222
ORF1ab/nsp1693T93delACG---11B.1.2580.000067
ORF1ab/nsp1693T93TacGacT11B.1.258.210.007752
ORF1ab/nsp1693T93MaCgaTg11B.1.3060.005714
ORF1ab/nsp1693T93MaCgaTg11B.1.3490.000715
ORF1ab/nsp1693T93MaCgaTg11B.1.351.20.000303
ORF1ab/nsp1693T93TacGacA11B.1.351.20.000303
ORF1ab/nsp1693T93TacGacT11B.1.360.000146
ORF1ab/nsp1693T93TacGacT11B.1.3610.001289
ORF1ab/nsp1693T93MaCgaTg11B.1.3670.000792
ORF1ab/nsp1693T93MaCgaTg11B.1.3690.000285
ORF1ab/nsp1693T93MaCgaTg11B.1.3890.001002
ORF1ab/nsp1693T93MaCgaTg11B.1.3960.000706
ORF1ab/nsp1693T93delACG---11B.1.4000.000429
ORF1ab/nsp1693T93AAcgGcg11B.1.4040.001302
ORF1ab/nsp1693T93MaCgaTg11B.1.466.20.000391
ORF1ab/nsp1693T93MaCgaTg11B.1.4970.000315
ORF1ab/nsp1693T93IaCGaTA11B.1.5250.000113
ORF1ab/nsp1693T93TacGacC11B.1.5250.000113
ORF1ab/nsp1693T93TacGacT11B.1.5410.004425
ORF1ab/nsp1693T93TacGacA11B.1.5440.006024
ORF1ab/nsp1693T93MaCgaTg11B.1.575.10.002439
ORF1ab/nsp1693T93TacGacT11B.1.5800.004065
ORF1ab/nsp1693T93MaCgaTg11B.1.5820.000491
ORF1ab/nsp1693T93MaCgaTg11B.1.5900.004545
ORF1ab/nsp1693T93AAcgGcg11B.1.6090.000479
ORF1ab/nsp1693T93MaCgaTg11B.1.6090.000479
ORF1ab/nsp1693T93VACgGTg11B.1.617.10.000129
ORF1ab/nsp1693T93delACG---11B.1.6200.000946
ORF1ab/nsp1693T93MaCgaTg11B.1.6280.000352
ORF1ab/nsp1693T93TacGacT11B.1.6370.000073
ORF1ab/nsp1693T93TacGacA11B.1.940.027027
ORF1ab/nsp1693T93MaCgaTg11B.400.000364
ORF1ab/nsp1693T93AAcgGcg11B.6.60.000889
ORF1ab/nsp1693T93delACG---11B.610.005747
ORF1ab/nsp1693T93MaCgaTg11C.1.20.004255
ORF1ab/nsp1693T93TacGacT11C.36.30.000567
ORF1ab/nsp1693T93AAcgGcg11D.20.000075
ORF1ab/nsp1693T93TacGacC11D.20.000075
ORF1ab/nsp1693T93TacGacT11N.40.004255
ORF1ab/nsp1693T93PAcgCcg11P.1.10.000318
ORF1ab/nsp1693T93MaCgaTg11P.1.10.000318
ORF1ab/nsp1693T93TacGacA11P.1.120.000484
ORF1ab/nsp1693T93MaCgaTg11P.1.140.000048
ORF1ab/nsp1693T93MaCgaTg11P.1.150.000232
ORF1ab/nsp1693T93MaCgaTg11P.1.170.000162
ORF1ab/nsp1693T93MaCgaTg11Q.10.000126
ORF1ab/nsp1693T93AAcgGcg11Q.30.000145
ORF1ab/nsp1693T93TacGacA11Q.60.006623
ORF1ab/nsp1693T93TacGacA11Q.80.000165
ORF1ab/nsp1693T93AAcgGcg11S.10.00495