CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 91 & Codon = acA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1691T91TT6889TsynacGacA462212600.27260920929-20931

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1691T91TacGacA12604622All0.000241
ORF1ab/nsp1691T91TacGacA1745B.1.4270.00005
ORF1ab/nsp1691T91TacGacA631656P.10.009941
ORF1ab/nsp1691T91TacGacA213444B.1.1.70.000191
ORF1ab/nsp1691T91TacGacA28253AY.40.000044
ORF1ab/nsp1691T91TacGacA8132B.1.617.20.00003
ORF1ab/nsp1691T91TacGacA13122B.10.000119
ORF1ab/nsp1691T91TacGacA5103AY.30.00005
ORF1ab/nsp1691T91TacGacA2088B.1.3510.000595
ORF1ab/nsp1691T91TacGacA1171AY.430.000049
ORF1ab/nsp1691T91TacGacA1347B.1.20.000114
ORF1ab/nsp1691T91TacGacA243AY.1020.000053
ORF1ab/nsp1691T91TacGacA2040AY.440.000122
ORF1ab/nsp1691T91TacGacA3838B.1.1731
ORF1ab/nsp1691T91TacGacA235B.1.4290.000047
ORF1ab/nsp1691T91TacGacA1234AY.1030.000075
ORF1ab/nsp1691T91TacGacA2034AY.250.00012
ORF1ab/nsp1691T91TacGacA333AY.390.000074
ORF1ab/nsp1691T91TacGacA129AY.9.20.000037
ORF1ab/nsp1691T91TacGacA127B.1.1600.000031
ORF1ab/nsp1691T91TacGacA2425B.1.1.4320.03038
ORF1ab/nsp1691T91TacGacA1720B.1.5960.001481
ORF1ab/nsp1691T91TacGacA1017B.1.6210.000885
ORF1ab/nsp1691T91TacGacA116AY.330.000067
ORF1ab/nsp1691T91TacGacA1116B.1.1770.000145
ORF1ab/nsp1691T91TacGacA116B.1.438.10.000107
ORF1ab/nsp1691T91TacGacA113AY.260.000028
ORF1ab/nsp1691T91TacGacA513AY.50.000103
ORF1ab/nsp1691T91TacGacA1313B.1.36.350.033854
ORF1ab/nsp1691T91TacGacA1012AY.750.00056
ORF1ab/nsp1691T91TacGacA612B.1.1.5190.000238
ORF1ab/nsp1691T91TacGacA1012B.1.2210.00071
ORF1ab/nsp1691T91TacGacA210AY.230.000139
ORF1ab/nsp1691T91TacGacA1010AY.590.005297
ORF1ab/nsp1691T91TacGacA1010AY.990.010493
ORF1ab/nsp1691T91TacGacA410C.370.000464
ORF1ab/nsp1691T91TacGacA19B.1.5260.000024
ORF1ab/nsp1691T91TacGacA29B.1.617.10.000258
ORF1ab/nsp1691T91TacGacA89P.1.10.002541
ORF1ab/nsp1691T91TacGacA99P.1.120.004356
ORF1ab/nsp1691T91TacGacA78AY.90.000473
ORF1ab/nsp1691T91TacGacA38P.1.140.000143
ORF1ab/nsp1691T91TacGacA36AY.200.000117
ORF1ab/nsp1691T91TacGacA26AY.290.000032
ORF1ab/nsp1691T91TacGacA16AY.39.10.00004
ORF1ab/nsp1691T91TacGacA15P.1.160.000374
ORF1ab/nsp1691T91TacGacA24AY.1130.000285
ORF1ab/nsp1691T91TacGacA24AY.340.000194
ORF1ab/nsp1691T91TacGacA24AY.450.000243
ORF1ab/nsp1691T91TacGacA24AY.610.00021
ORF1ab/nsp1691T91TacGacA13AY.420.00004
ORF1ab/nsp1691T91TacGacA13AY.60.000041
ORF1ab/nsp1691T91TacGacA33B.1.1.4340.001046
ORF1ab/nsp1691T91TacGacA33B.1.1280.001906
ORF1ab/nsp1691T91TacGacA13B.1.466.20.000391
ORF1ab/nsp1691T91TacGacA13P.20.000187
ORF1ab/nsp1691T91TacGacA23R.10.00018
ORF1ab/nsp1691T91TacGacA22AP.10.003003
ORF1ab/nsp1691T91TacGacA12AY.1080.001103
ORF1ab/nsp1691T91TacGacA12AY.120.10.000321
ORF1ab/nsp1691T91TacGacA22AY.4.20.000043
ORF1ab/nsp1691T91TacGacA12AY.75.10.00018
ORF1ab/nsp1691T91TacGacA22B.1.1.2160.001781
ORF1ab/nsp1691T91TacGacA22B.1.36.360.001204
ORF1ab/nsp1691T91TacGacA12C.360.000911
ORF1ab/nsp1691T91TacGacA110.055556
ORF1ab/nsp1691T91TacGacA11AU.30.00211
ORF1ab/nsp1691T91TacGacA11AY.1160.000287
ORF1ab/nsp1691T91TacGacA11AY.29.10.000221
ORF1ab/nsp1691T91TacGacA11AY.320.000532
ORF1ab/nsp1691T91TacGacA11AY.46.10.001027
ORF1ab/nsp1691T91TacGacA11AY.790.001211
ORF1ab/nsp1691T91TacGacA11B.1.1.2200.001859
ORF1ab/nsp1691T91TacGacA11B.1.1.500.000679
ORF1ab/nsp1691T91TacGacA11B.1.177.270.009434
ORF1ab/nsp1691T91TacGacA11B.1.177.480.003125
ORF1ab/nsp1691T91TacGacA11B.1.5200.021739
ORF1ab/nsp1691T91TacGacA11B.400.000364
ORF1ab/nsp1691T91TacGacA11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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