CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 91 | T91M | T6889M | nonsyn | aCg | aTg | 6288 | 6288 | 1 | 20929-20931 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6288 | 6288 | All | 0.001203 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1753 | 1753 | B.1.1.7 | 0.001569 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 670 | 670 | AY.44 | 0.004078 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 483 | 483 | AY.4 | 0.000752 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 265 | 265 | P.1.2 | 0.306358 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 264 | 264 | AY.56 | 0.423756 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 216 | 216 | AY.65 | 0.115139 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 208 | 208 | B.1.617.2 | 0.000783 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 153 | 153 | AY.103 | 0.00095 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 144 | 144 | AY.43 | 0.000638 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 117 | 117 | B.1.177 | 0.001541 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 113 | 113 | P.1 | 0.00178 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 102 | 102 | B.1.2 | 0.000898 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 98 | 98 | B.1 | 0.000898 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 71 | 71 | AY.25 | 0.000427 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 59 | 59 | B.1.177.81 | 0.01117 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 56 | 56 | B.1.243 | 0.003897 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 55 | 55 | AY.120 | 0.002045 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 45 | 45 | P.1.7 | 0.014368 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 43 | 43 | AY.3 | 0.000428 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 42 | 42 | B.1.160 | 0.00131 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 40 | 40 | AY.9.2 | 0.001469 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 37 | 37 | B.1.351 | 0.0011 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 37 | 37 | B.1.526 | 0.00087 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 34 | 34 | B.1.1 | 0.000617 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 30 | 30 | B.1.429 | 0.000706 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 29 | 29 | AY.118 | 0.001817 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 27 | 27 | AY.39 | 0.000667 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 26 | 26 | AY.29 | 0.00041 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 25 | 25 | AY.100 | 0.00115 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 24 | 24 | AY.102 | 0.000636 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 23 | 23 | AY.75 | 0.001289 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 22 | 22 | AY.14 | 0.001936 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 22 | 22 | AY.52 | 0.017915 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 21 | 21 | AY.5 | 0.000434 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 19 | 19 | AY.4.2 | 0.000412 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 19 | 19 | AY.98.1 | 0.00092 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 19 | 19 | B.1.1.519 | 0.000755 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 17 | 17 | AY.20 | 0.000661 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 17 | 17 | AY.61 | 0.001781 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 17 | 17 | B.1.637 | 0.001242 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 17 | 17 | Q.8 | 0.002803 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 16 | 16 | AY.41 | 0.004703 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 16 | 16 | B.1.258.17 | 0.001664 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 15 | 15 | AY.46.4 | 0.002468 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 14 | 14 | AY.75.1 | 0.002524 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 14 | 14 | B.1.1.374 | 0.033254 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 13 | 13 | AY.27 | 0.000841 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 13 | 13 | AY.9.1 | 0.001088 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 13 | 13 | B.1.311 | 0.003569 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | AY.4.3 | 0.010101 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | B.1.1.398 | 0.03871 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | B.1.369 | 0.003423 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | B.1.525 | 0.001358 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | C.35 | 0.009288 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 11 | 11 | AY.121 | 0.001488 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 11 | 11 | B.1.177.65 | 0.007319 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 11 | 11 | B.1.427 | 0.000555 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 9 | 9 | B.1.1.417 | 0.024324 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 9 | 9 | B.1.177.21 | 0.000688 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 9 | 9 | B.1.177.82 | 0.004296 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | AY.24 | 0.003448 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | AY.48 | 0.003721 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | Q.1 | 0.001011 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | AY.111 | 0.001282 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.1.192 | 0.016166 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.1.263 | 0.010903 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.1.318 | 0.002112 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.599 | 0.025547 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.78 | 0.059829 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | AZ.4 | 0.020134 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | B.1.177.87 | 0.004367 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 5 | 5 | AY.105 | 0.003215 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 5 | 5 | AY.38 | 0.002496 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 5 | 5 | Z.1 | 0.014451 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | AU.1 | 0.005063 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.1.112 | 0.235294 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.438 | 0.026144 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.28 | 0.005671 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B | 0.000383 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.179 | 0.011278 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.221.2 | 0.012048 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.571 | 0.029126 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.118 | 0.020408 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.408 | 0.00738 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.527 | 0.007407 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.18 | 0.010101 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.213 | 0.021739 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.268 | 0.014925 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.300 | 0.010753 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.353 | 0.020833 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.467 | 0.019231 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.240.2 | 0.030303 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.539 | 0.017544 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.562 | 0.018519 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.635 | 0.017544 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | C.32 | 0.023256 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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