CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 91

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1691T91MT6889MnonsynaCgaTg62886288120929-20931
ORF1ab/nsp1691T91TT6889TsynacGacT462233520.72522720929-20931
ORF1ab/nsp1691T91TT6889TsynacGacA462212600.27260920929-20931
ORF1ab/nsp1691T91TT6889TsynacGacC4622100.0021635720929-20931
ORF1ab/nsp1691T91AT6889AnonsynAcgGcg96940.97916720929-20931
ORF1ab/nsp1691T91AT6889AnonsynAcGGcA9610.010416720929-20931
ORF1ab/nsp1691T91AT6889AnonsynAcGGcT9610.010416720929-20931
ORF1ab/nsp1691T91ST6889SnonsynAcgTcg4949120929-20931
ORF1ab/nsp1691T91delT6889deldelACG---2424120929-20931
ORF1ab/nsp1691T91KT6889KnonsynaCgaAg19180.94736820929-20931
ORF1ab/nsp1691T91KT6889KnonsynaCGaAA1910.052631620929-20931
ORF1ab/nsp1691T91del1T6889del1delacGac-13120.92307720929-20931
ORF1ab/nsp1691T91del1T6889del1delaCga-g1310.076923120929-20931
ORF1ab/nsp1691T91IT6889InonsynaCGaTA1160.54545520929-20931
ORF1ab/nsp1691T91IT6889InonsynaCGaTT1150.45454520929-20931
ORF1ab/nsp1691T91PT6889PnonsynAcgCcg44120929-20931
ORF1ab/nsp1691T91VT6889VnonsynACGGTA430.7520929-20931
ORF1ab/nsp1691T91VT6889VnonsynACgGTg410.2520929-20931
ORF1ab/nsp1691T91RT6889RnonsynaCgaGg11120929-20931
ORF1ab/nsp1691T91LT6889LnonsynACgTTg11120929-20931
ORF1ab/nsp1691T91del2T6889del2delACG--C11120929-20931

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1691T91MaCgaTg62886288All0.001203
ORF1ab/nsp1691T91TacGacT33524622All0.000641
ORF1ab/nsp1691T91TacGacA12604622All0.000241
ORF1ab/nsp1691T91TacGacC104622All0.000002
ORF1ab/nsp1691T91MaCgaTg17531753B.1.1.70.001569
ORF1ab/nsp1691T91TacGacT744745B.1.4270.03757
ORF1ab/nsp1691T91TacGacA1745B.1.4270.00005
ORF1ab/nsp1691T91MaCgaTg670670AY.440.004078
ORF1ab/nsp1691T91TacGacA631656P.10.009941
ORF1ab/nsp1691T91TacGacT25656P.10.000394
ORF1ab/nsp1691T91MaCgaTg483483AY.40.000752
ORF1ab/nsp1691T91TacGacT231444B.1.1.70.000207
ORF1ab/nsp1691T91TacGacA213444B.1.1.70.000191
ORF1ab/nsp1691T91TacGacT442442C.350.342105
ORF1ab/nsp1691T91MaCgaTg265265P.1.20.306358
ORF1ab/nsp1691T91MaCgaTg264264AY.560.423756
ORF1ab/nsp1691T91TacGacT224253AY.40.000349
ORF1ab/nsp1691T91TacGacA28253AY.40.000044
ORF1ab/nsp1691T91TacGacC1253AY.40.000002
ORF1ab/nsp1691T91MaCgaTg216216AY.650.115139
ORF1ab/nsp1691T91MaCgaTg208208B.1.617.20.000783
ORF1ab/nsp1691T91TacGacT199199B.1.177.540.120679
ORF1ab/nsp1691T91MaCgaTg153153AY.1030.00095
ORF1ab/nsp1691T91MaCgaTg144144AY.430.000638
ORF1ab/nsp1691T91TacGacT123132B.1.617.20.000463
ORF1ab/nsp1691T91TacGacA8132B.1.617.20.00003
ORF1ab/nsp1691T91TacGacC1132B.1.617.20.000004
ORF1ab/nsp1691T91TacGacT109122B.10.000998
ORF1ab/nsp1691T91TacGacA13122B.10.000119
ORF1ab/nsp1691T91MaCgaTg117117B.1.1770.001541
ORF1ab/nsp1691T91MaCgaTg113113P.10.00178
ORF1ab/nsp1691T91TacGacT98103AY.30.000975
ORF1ab/nsp1691T91TacGacA5103AY.30.00005
ORF1ab/nsp1691T91MaCgaTg102102B.1.20.000898
ORF1ab/nsp1691T91MaCgaTg9898B.10.000898
ORF1ab/nsp1691T91AAcgGcg9496All0.000018
ORF1ab/nsp1691T91AAcGGcA196All0
ORF1ab/nsp1691T91AAcGGcT196All0
ORF1ab/nsp1691T91TacGacT6888B.1.3510.002021
ORF1ab/nsp1691T91TacGacA2088B.1.3510.000595
ORF1ab/nsp1691T91TacGacT7272AY.870.05995
ORF1ab/nsp1691T91MaCgaTg7171AY.250.000427
ORF1ab/nsp1691T91TacGacT6071AY.430.000266
ORF1ab/nsp1691T91TacGacA1171AY.430.000049
ORF1ab/nsp1691T91TacGacT7171B.1.5250.008034
ORF1ab/nsp1691T91MaCgaTg5959B.1.177.810.01117
ORF1ab/nsp1691T91MaCgaTg5656B.1.2430.003897
ORF1ab/nsp1691T91MaCgaTg5555AY.1200.002045
ORF1ab/nsp1691T91TacGacT5151P.1.150.011849
ORF1ab/nsp1691T91SAcgTcg4949All0.000009
ORF1ab/nsp1691T91TacGacT4949B.1.6200.046358
ORF1ab/nsp1691T91TacGacT3447B.1.20.000299
ORF1ab/nsp1691T91TacGacA1347B.1.20.000114
ORF1ab/nsp1691T91MaCgaTg4545P.1.70.014368
ORF1ab/nsp1691T91TacGacT4143AY.1020.001087
ORF1ab/nsp1691T91TacGacA243AY.1020.000053
ORF1ab/nsp1691T91MaCgaTg4343AY.30.000428
ORF1ab/nsp1691T91MaCgaTg4242B.1.1600.00131
ORF1ab/nsp1691T91TacGacA2040AY.440.000122
ORF1ab/nsp1691T91TacGacT1740AY.440.000103
ORF1ab/nsp1691T91TacGacC340AY.440.000018
ORF1ab/nsp1691T91MaCgaTg4040AY.9.20.001469
ORF1ab/nsp1691T91TacGacT3738B.1.10.000671
ORF1ab/nsp1691T91TacGacC138B.1.10.000018
ORF1ab/nsp1691T91TacGacA3838B.1.1731
ORF1ab/nsp1691T91MaCgaTg3737B.1.3510.0011
ORF1ab/nsp1691T91MaCgaTg3737B.1.5260.00087
ORF1ab/nsp1691T91TacGacT3335B.1.4290.000776
ORF1ab/nsp1691T91TacGacA235B.1.4290.000047
ORF1ab/nsp1691T91TacGacT2234AY.1030.000137
ORF1ab/nsp1691T91TacGacA1234AY.1030.000075
ORF1ab/nsp1691T91TacGacA2034AY.250.00012
ORF1ab/nsp1691T91TacGacT1434AY.250.000084
ORF1ab/nsp1691T91MaCgaTg3434B.1.10.000617
ORF1ab/nsp1691T91TacGacT3033AY.390.000741
ORF1ab/nsp1691T91TacGacA333AY.390.000074
ORF1ab/nsp1691T91AAcgGcg3131B.1.258.170.003223
ORF1ab/nsp1691T91MaCgaTg3030B.1.4290.000706
ORF1ab/nsp1691T91MaCgaTg2929AY.1180.001817
ORF1ab/nsp1691T91TacGacT2829AY.9.20.001028
ORF1ab/nsp1691T91TacGacA129AY.9.20.000037
ORF1ab/nsp1691T91TacGacT2929B.1.36.160.041311
ORF1ab/nsp1691T91MaCgaTg2727AY.390.000667
ORF1ab/nsp1691T91TacGacT2627B.1.1600.000811
ORF1ab/nsp1691T91TacGacA127B.1.1600.000031
ORF1ab/nsp1691T91MaCgaTg2626AY.290.00041
ORF1ab/nsp1691T91MaCgaTg2525AY.1000.00115
ORF1ab/nsp1691T91TacGacA2425B.1.1.4320.03038
ORF1ab/nsp1691T91TacGacT125B.1.1.4320.001266
ORF1ab/nsp1691T91delACG---2424All0.000005
ORF1ab/nsp1691T91MaCgaTg2424AY.1020.000636
ORF1ab/nsp1691T91MaCgaTg2323AY.750.001289
ORF1ab/nsp1691T91SAcgTcg2323B.1.177.210.001759
ORF1ab/nsp1691T91MaCgaTg2222AY.140.001936
ORF1ab/nsp1691T91MaCgaTg2222AY.520.017915
ORF1ab/nsp1691T91MaCgaTg2121AY.50.000434
ORF1ab/nsp1691T91SAcgTcg2020AY.440.000122
ORF1ab/nsp1691T91TacGacA1720B.1.5960.001481
ORF1ab/nsp1691T91TacGacT320B.1.5960.000261
ORF1ab/nsp1691T91KaCgaAg1819All0.000003
ORF1ab/nsp1691T91KaCGaAA119All0
ORF1ab/nsp1691T91MaCgaTg1919AY.4.20.000412
ORF1ab/nsp1691T91MaCgaTg1919AY.98.10.00092
ORF1ab/nsp1691T91MaCgaTg1919B.1.1.5190.000755
ORF1ab/nsp1691T91MaCgaTg1818AY.470.00056
ORF1ab/nsp1691T91MaCgaTg1717AY.200.000661
ORF1ab/nsp1691T91MaCgaTg1717AY.610.001781
ORF1ab/nsp1691T91TacGacT1717B.1.1.3411
ORF1ab/nsp1691T91TacGacA1017B.1.6210.000885
ORF1ab/nsp1691T91TacGacT717B.1.6210.00062
ORF1ab/nsp1691T91MaCgaTg1717B.1.6370.001242
ORF1ab/nsp1691T91MaCgaTg1717Q.80.002803
ORF1ab/nsp1691T91TacGacT1516AY.330.001002
ORF1ab/nsp1691T91TacGacA116AY.330.000067
ORF1ab/nsp1691T91MaCgaTg1616AY.410.004703
ORF1ab/nsp1691T91TacGacT1616AY.780.024653
ORF1ab/nsp1691T91TacGacT1616AY.98.10.000775
ORF1ab/nsp1691T91TacGacA1116B.1.1770.000145
ORF1ab/nsp1691T91TacGacT516B.1.1770.000066
ORF1ab/nsp1691T91MaCgaTg1616B.1.258.170.001664
ORF1ab/nsp1691T91TacGacT1516B.1.438.10.001609
ORF1ab/nsp1691T91TacGacA116B.1.438.10.000107
ORF1ab/nsp1691T91TacGacT1515AY.1190.00053
ORF1ab/nsp1691T91MaCgaTg1515AY.46.40.002468
ORF1ab/nsp1691T91MaCgaTg1414AY.260.000396
ORF1ab/nsp1691T91MaCgaTg1414AY.75.10.002524
ORF1ab/nsp1691T91MaCgaTg1414B.1.1.3740.033254
ORF1ab/nsp1691T91AAcgGcg1414B.1.1.70.000013
ORF1ab/nsp1691T91TacGacT1414B.1.3990.027079
ORF1ab/nsp1691T91del1acGac-1213All0.000002
ORF1ab/nsp1691T91del1aCga-g113All0
ORF1ab/nsp1691T91TacGacT1213AY.260.00034
ORF1ab/nsp1691T91TacGacA113AY.260.000028
ORF1ab/nsp1691T91MaCgaTg1313AY.270.000841
ORF1ab/nsp1691T91TacGacT813AY.50.000165
ORF1ab/nsp1691T91TacGacA513AY.50.000103
ORF1ab/nsp1691T91MaCgaTg1313AY.9.10.001088
ORF1ab/nsp1691T91MaCgaTg1313B.1.3110.003569
ORF1ab/nsp1691T91TacGacA1313B.1.36.350.033854
ORF1ab/nsp1691T91MaCgaTg1212AY.4.30.010101
ORF1ab/nsp1691T91TacGacA1012AY.750.00056
ORF1ab/nsp1691T91TacGacT212AY.750.000112
ORF1ab/nsp1691T91MaCgaTg1212B.1.1.3980.03871
ORF1ab/nsp1691T91TacGacA612B.1.1.5190.000238
ORF1ab/nsp1691T91TacGacT612B.1.1.5190.000238
ORF1ab/nsp1691T91TacGacA1012B.1.2210.00071
ORF1ab/nsp1691T91TacGacT212B.1.2210.000142
ORF1ab/nsp1691T91MaCgaTg1212B.1.2580.000799
ORF1ab/nsp1691T91MaCgaTg1212B.1.3690.003423
ORF1ab/nsp1691T91TacGacT1212B.1.5170.005124
ORF1ab/nsp1691T91MaCgaTg1212B.1.5250.001358
ORF1ab/nsp1691T91MaCgaTg1212C.350.009288
ORF1ab/nsp1691T91IaCGaTA611All0.000001
ORF1ab/nsp1691T91IaCGaTT511All0.000001
ORF1ab/nsp1691T91MaCgaTg1111AY.1210.001488
ORF1ab/nsp1691T91MaCgaTg1111AY.230.000767
ORF1ab/nsp1691T91MaCgaTg1111B.1.177.650.007319
ORF1ab/nsp1691T91MaCgaTg1111B.1.177.860.002018
ORF1ab/nsp1691T91TacGacT1111B.1.177.870.008006
ORF1ab/nsp1691T91TacGacT1111B.1.2580.000732
ORF1ab/nsp1691T91MaCgaTg1111B.1.4270.000555
ORF1ab/nsp1691T91TacGacT810AY.230.000558
ORF1ab/nsp1691T91TacGacA210AY.230.000139
ORF1ab/nsp1691T91TacGacA1010AY.590.005297
ORF1ab/nsp1691T91MaCgaTg1010AY.60.000411
ORF1ab/nsp1691T91TacGacA1010AY.990.010493
ORF1ab/nsp1691T91TacGacT610C.370.000696
ORF1ab/nsp1691T91TacGacA410C.370.000464
ORF1ab/nsp1691T91TacGacT99AY.1210.001218
ORF1ab/nsp1691T91AAcgGcg89AY.30.00008
ORF1ab/nsp1691T91AAcGGcT19AY.30.00001
ORF1ab/nsp1691T91MaCgaTg99B.1.1.4170.024324
ORF1ab/nsp1691T91MaCgaTg99B.1.177.210.000688
ORF1ab/nsp1691T91MaCgaTg99B.1.177.820.004296
ORF1ab/nsp1691T91MaCgaTg99B.1.2210.000639
ORF1ab/nsp1691T91TacGacT89B.1.5260.000188
ORF1ab/nsp1691T91TacGacA19B.1.5260.000024
ORF1ab/nsp1691T91MaCgaTg99B.1.5960.000784
ORF1ab/nsp1691T91TacGacT79B.1.617.10.000903
ORF1ab/nsp1691T91TacGacA29B.1.617.10.000258
ORF1ab/nsp1691T91TacGacA89P.1.10.002541
ORF1ab/nsp1691T91TacGacT19P.1.10.000318
ORF1ab/nsp1691T91TacGacA99P.1.120.004356
ORF1ab/nsp1691T91MaCgaTg88AY.240.003448
ORF1ab/nsp1691T91MaCgaTg88AY.340.000776
ORF1ab/nsp1691T91MaCgaTg88AY.420.000322
ORF1ab/nsp1691T91MaCgaTg88AY.480.003721
ORF1ab/nsp1691T91TacGacA78AY.90.000473
ORF1ab/nsp1691T91TacGacT18AY.90.000068
ORF1ab/nsp1691T91TacGacT88B.1.177.600.001747
ORF1ab/nsp1691T91MaCgaTg88D.20.0006
ORF1ab/nsp1691T91TacGacT58P.1.140.000239
ORF1ab/nsp1691T91TacGacA38P.1.140.000143
ORF1ab/nsp1691T91MaCgaTg88Q.10.001011
ORF1ab/nsp1691T91MaCgaTg77AY.1110.001282
ORF1ab/nsp1691T91MaCgaTg77AY.1190.000247
ORF1ab/nsp1691T91MaCgaTg77AY.99.20.000645
ORF1ab/nsp1691T91TacGacT77B.1.1.1700.008728
ORF1ab/nsp1691T91MaCgaTg77B.1.1.1920.016166
ORF1ab/nsp1691T91MaCgaTg77B.1.1.2630.010903
ORF1ab/nsp1691T91TacGacT77B.1.1.2840.000752
ORF1ab/nsp1691T91MaCgaTg77B.1.1.3180.002112
ORF1ab/nsp1691T91MaCgaTg77B.1.5990.025547
ORF1ab/nsp1691T91MaCgaTg77B.1.617.10.000903
ORF1ab/nsp1691T91MaCgaTg77B.1.6210.00062
ORF1ab/nsp1691T91MaCgaTg77B.1.780.059829
ORF1ab/nsp1691T91MaCgaTg77P.1.140.000335
ORF1ab/nsp1691T91TacGacT36AY.200.000117
ORF1ab/nsp1691T91TacGacA36AY.200.000117
ORF1ab/nsp1691T91TacGacT46AY.290.000063
ORF1ab/nsp1691T91TacGacA26AY.290.000032
ORF1ab/nsp1691T91MaCgaTg66AY.360.000889
ORF1ab/nsp1691T91TacGacT56AY.39.10.000198
ORF1ab/nsp1691T91TacGacA16AY.39.10.00004
ORF1ab/nsp1691T91MaCgaTg66AY.540.000572
ORF1ab/nsp1691T91MaCgaTg66AZ.40.020134
ORF1ab/nsp1691T91delACG---66B.1.1.70.000005
ORF1ab/nsp1691T91MaCgaTg66B.1.177.870.004367
ORF1ab/nsp1691T91TacGacT66B.1.360.000875
ORF1ab/nsp1691T91AAcgGcg66B.1.5510.007742
ORF1ab/nsp1691T91MaCgaTg66C.370.000696
ORF1ab/nsp1691T91MaCgaTg66P.1.150.001394
ORF1ab/nsp1691T91MaCgaTg55AY.1050.003215
ORF1ab/nsp1691T91MaCgaTg55AY.130.000805
ORF1ab/nsp1691T91MaCgaTg55AY.3.10.000426
ORF1ab/nsp1691T91MaCgaTg55AY.380.002496
ORF1ab/nsp1691T91AAcgGcg55AY.40.000008
ORF1ab/nsp1691T91TacGacT55AY.46.60.000361
ORF1ab/nsp1691T91TacGacT55AY.820.006784
ORF1ab/nsp1691T91TacGacT55AZ.20.004105
ORF1ab/nsp1691T91TacGacT55B.1.1.280.001556
ORF1ab/nsp1691T91KaCgaAg55B.1.1.70.000004
ORF1ab/nsp1691T91TacGacT55B.1.3490.003574
ORF1ab/nsp1691T91AAcgGcg55P.10.000079
ORF1ab/nsp1691T91TacGacT45P.1.160.001496
ORF1ab/nsp1691T91TacGacA15P.1.160.000374
ORF1ab/nsp1691T91MaCgaTg55Z.10.014451
ORF1ab/nsp1691T91VACGGTA340.166667
ORF1ab/nsp1691T91VACgGTg140.055556
ORF1ab/nsp1691T91TacGacT44A.23.10.002817
ORF1ab/nsp1691T91MaCgaTg44AE.80.001956
ORF1ab/nsp1691T91PAcgCcg44All0.000001
ORF1ab/nsp1691T91VACGGTA34All0.000001
ORF1ab/nsp1691T91VACgGTg14All0
ORF1ab/nsp1691T91MaCgaTg44AU.10.005063
ORF1ab/nsp1691T91TacGacT24AY.1130.000285
ORF1ab/nsp1691T91TacGacA24AY.1130.000285
ORF1ab/nsp1691T91TacGacT44AY.1170.000338
ORF1ab/nsp1691T91TacGacT44AY.1200.000149
ORF1ab/nsp1691T91TacGacA24AY.340.000194
ORF1ab/nsp1691T91TacGacT24AY.340.000194
ORF1ab/nsp1691T91AAcgGcg44AY.390.000099
ORF1ab/nsp1691T91TacGacT24AY.450.000243
ORF1ab/nsp1691T91TacGacA24AY.450.000243
ORF1ab/nsp1691T91MaCgaTg44AY.530.00115
ORF1ab/nsp1691T91TacGacA24AY.610.00021
ORF1ab/nsp1691T91TacGacT24AY.610.00021
ORF1ab/nsp1691T91MaCgaTg44AY.80.002424
ORF1ab/nsp1691T91TacGacT44AY.920.001149
ORF1ab/nsp1691T91TacGacT44AY.99.20.000369
ORF1ab/nsp1691T91TacGacT44B0.000511
ORF1ab/nsp1691T91MaCgaTg44B.1.1.1120.235294
ORF1ab/nsp1691T91MaCgaTg44B.1.1.2140.000222
ORF1ab/nsp1691T91MaCgaTg44B.1.1.2220.000816
ORF1ab/nsp1691T91TacGacT44B.1.1.2220.000816
ORF1ab/nsp1691T91MaCgaTg44B.1.1.280.001245
ORF1ab/nsp1691T91MaCgaTg44B.1.177.120.000607
ORF1ab/nsp1691T91MaCgaTg44B.1.2340.000528
ORF1ab/nsp1691T91MaCgaTg44B.1.360.000584
ORF1ab/nsp1691T91MaCgaTg44B.1.36.180.001681
ORF1ab/nsp1691T91MaCgaTg44B.1.36.290.002069
ORF1ab/nsp1691T91TacGacT44B.1.36.290.002069
ORF1ab/nsp1691T91MaCgaTg44B.1.4000.001716
ORF1ab/nsp1691T91MaCgaTg44B.1.4380.026144
ORF1ab/nsp1691T91MaCgaTg44Q.30.00058
ORF1ab/nsp1691T91TacGacT33AY.1000.000138
ORF1ab/nsp1691T91TacGacT33AY.110.004016
ORF1ab/nsp1691T91MaCgaTg33AY.116.10.000934
ORF1ab/nsp1691T91TacGacT33AY.130.000483
ORF1ab/nsp1691T91MaCgaTg33AY.280.005671
ORF1ab/nsp1691T91MaCgaTg33AY.29.10.000662
ORF1ab/nsp1691T91TacGacT23AY.420.00008
ORF1ab/nsp1691T91TacGacA13AY.420.00004
ORF1ab/nsp1691T91AAcgGcg33AY.440.000018
ORF1ab/nsp1691T91MaCgaTg33AY.46.60.000217
ORF1ab/nsp1691T91TacGacT23AY.60.000082
ORF1ab/nsp1691T91TacGacA13AY.60.000041
ORF1ab/nsp1691T91MaCgaTg33AY.670.001393
ORF1ab/nsp1691T91MaCgaTg33AY.710.001425
ORF1ab/nsp1691T91TacGacT33AY.850.001282
ORF1ab/nsp1691T91MaCgaTg33AY.90.000203
ORF1ab/nsp1691T91MaCgaTg33AY.920.000862
ORF1ab/nsp1691T91MaCgaTg33B0.000383
ORF1ab/nsp1691T91MaCgaTg33B.1.1.1530.003286
ORF1ab/nsp1691T91MaCgaTg33B.1.1.2160.002671
ORF1ab/nsp1691T91MaCgaTg33B.1.1.3060.001315
ORF1ab/nsp1691T91TacGacT33B.1.1.3170.001235
ORF1ab/nsp1691T91MaCgaTg33B.1.1.330.001263
ORF1ab/nsp1691T91TacGacA33B.1.1.4340.001046
ORF1ab/nsp1691T91MaCgaTg33B.1.1.700.001023
ORF1ab/nsp1691T91TacGacA33B.1.1280.001906
ORF1ab/nsp1691T91MaCgaTg33B.1.1790.011278
ORF1ab/nsp1691T91MaCgaTg33B.1.221.20.012048
ORF1ab/nsp1691T91MaCgaTg33B.1.3490.002144
ORF1ab/nsp1691T91TacGacT33B.1.4060.018182
ORF1ab/nsp1691T91MaCgaTg33B.1.466.20.001174
ORF1ab/nsp1691T91TacGacT23B.1.466.20.000782
ORF1ab/nsp1691T91TacGacA13B.1.466.20.000391
ORF1ab/nsp1691T91MaCgaTg33B.1.5710.029126
ORF1ab/nsp1691T91AAcgGcg33B.1.617.20.000011
ORF1ab/nsp1691T91MaCgaTg33C.36.30.001702
ORF1ab/nsp1691T91TacGacT23D.20.00015
ORF1ab/nsp1691T91TacGacC13D.20.000075
ORF1ab/nsp1691T91delACG---33P.1.150.000697
ORF1ab/nsp1691T91TacGacT23P.20.000373
ORF1ab/nsp1691T91TacGacA13P.20.000187
ORF1ab/nsp1691T91TacGacT33Q.10.000379
ORF1ab/nsp1691T91TacGacA23R.10.00018
ORF1ab/nsp1691T91TacGacT13R.10.00009
ORF1ab/nsp1691T91delACG---220.111111
ORF1ab/nsp1691T91del1acGac-220.111111
ORF1ab/nsp1691T91AAcgGcg120.055556
ORF1ab/nsp1691T91AAcGGcA120.055556
ORF1ab/nsp1691T91MaCgaTg22A.10.000564
ORF1ab/nsp1691T91TacGacT22AD.20.000438
ORF1ab/nsp1691T91TacGacA22AP.10.003003
ORF1ab/nsp1691T91MaCgaTg22AY.1010.000981
ORF1ab/nsp1691T91TacGacT22AY.1060.00067
ORF1ab/nsp1691T91MaCgaTg22AY.1060.00067
ORF1ab/nsp1691T91MaCgaTg22AY.1070.000932
ORF1ab/nsp1691T91TacGacA12AY.1080.001103
ORF1ab/nsp1691T91TacGacT12AY.1080.001103
ORF1ab/nsp1691T91MaCgaTg22AY.1100.000225
ORF1ab/nsp1691T91MaCgaTg22AY.1170.000169
ORF1ab/nsp1691T91delACG---22AY.1200.000074
ORF1ab/nsp1691T91MaCgaTg22AY.120.10.000642
ORF1ab/nsp1691T91TacGacC12AY.120.10.000321
ORF1ab/nsp1691T91TacGacA12AY.120.10.000321
ORF1ab/nsp1691T91TacGacC12AY.16.10.00047
ORF1ab/nsp1691T91TacGacT12AY.16.10.00047
ORF1ab/nsp1691T91AAcgGcg22AY.230.000139
ORF1ab/nsp1691T91MaCgaTg22AY.300.000791
ORF1ab/nsp1691T91TacGacA22AY.4.20.000043
ORF1ab/nsp1691T91MaCgaTg22AY.4.2.10.000298
ORF1ab/nsp1691T91MaCgaTg22AY.4.50.000215
ORF1ab/nsp1691T91del1acGac-22AY.440.000012
ORF1ab/nsp1691T91KaCgaAg22AY.450.000243
ORF1ab/nsp1691T91MaCgaTg22AY.460.000208
ORF1ab/nsp1691T91TacGacT22AY.5.10.007519
ORF1ab/nsp1691T91MaCgaTg22AY.590.001059
ORF1ab/nsp1691T91MaCgaTg22AY.620.000871
ORF1ab/nsp1691T91MaCgaTg22AY.630.000774
ORF1ab/nsp1691T91MaCgaTg22AY.690.000373
ORF1ab/nsp1691T91MaCgaTg22AY.7.10.000225
ORF1ab/nsp1691T91IaCGaTT22AY.7.10.000225
ORF1ab/nsp1691T91MaCgaTg22AY.730.001331
ORF1ab/nsp1691T91TacGacA12AY.75.10.00018
ORF1ab/nsp1691T91TacGacT12AY.75.10.00018
ORF1ab/nsp1691T91MaCgaTg22AY.850.000854
ORF1ab/nsp1691T91MaCgaTg22B.1.1.1180.020408
ORF1ab/nsp1691T91TacGacT22B.1.1.1890.003026
ORF1ab/nsp1691T91TacGacT22B.1.1.1920.004619
ORF1ab/nsp1691T91TacGacA22B.1.1.2160.001781
ORF1ab/nsp1691T91MaCgaTg22B.1.1.2360.013793
ORF1ab/nsp1691T91TacGacT22B.1.1.250.001137
ORF1ab/nsp1691T91MaCgaTg22B.1.1.2940.002532
ORF1ab/nsp1691T91MaCgaTg22B.1.1.2980.001724
ORF1ab/nsp1691T91MaCgaTg22B.1.1.3170.000823
ORF1ab/nsp1691T91TacGacT22B.1.1.330.000842
ORF1ab/nsp1691T91MaCgaTg22B.1.1.500.001358
ORF1ab/nsp1691T91MaCgaTg22B.1.1.5260.007092
ORF1ab/nsp1691T91TacGacT22B.1.1700.008621
ORF1ab/nsp1691T91MaCgaTg22B.1.177.40.000422
ORF1ab/nsp1691T91MaCgaTg22B.1.177.60.001953
ORF1ab/nsp1691T91MaCgaTg22B.1.1890.008584
ORF1ab/nsp1691T91AAcgGcg22B.1.20.000018
ORF1ab/nsp1691T91TacGacT22B.1.221.20.008032
ORF1ab/nsp1691T91MaCgaTg22B.1.258.140.001961
ORF1ab/nsp1691T91TacGacT22B.1.3110.000549
ORF1ab/nsp1691T91MaCgaTg22B.1.36.10.002281
ORF1ab/nsp1691T91TacGacA22B.1.36.360.001204
ORF1ab/nsp1691T91TacGacT22B.1.36.380.003284
ORF1ab/nsp1691T91MaCgaTg22B.1.3610.002577
ORF1ab/nsp1691T91TacGacT22B.1.3670.001585
ORF1ab/nsp1691T91MaCgaTg22B.1.3990.003868
ORF1ab/nsp1691T91MaCgaTg22B.1.4080.00738
ORF1ab/nsp1691T91TacGacT12B.1.4620.007246
ORF1ab/nsp1691T91TacGacC12B.1.4620.007246
ORF1ab/nsp1691T91TacGacT22B.1.4970.00063
ORF1ab/nsp1691T91TacGacT22B.1.5090.001732
ORF1ab/nsp1691T91MaCgaTg22B.1.5270.007407
ORF1ab/nsp1691T91MaCgaTg22B.1.5610.000794
ORF1ab/nsp1691T91TacGacT22B.1.5680.002222
ORF1ab/nsp1691T91TacGacT22B.1.6090.000959
ORF1ab/nsp1691T91KaCgaAg22B.1.617.20.000008
ORF1ab/nsp1691T91SAcgTcg22B.1.617.20.000008
ORF1ab/nsp1691T91del1acGac-22B.1.6270.00404
ORF1ab/nsp1691T91TacGacT22B.390.004662
ORF1ab/nsp1691T91TacGacA12C.360.000911
ORF1ab/nsp1691T91TacGacT12C.360.000911
ORF1ab/nsp1691T91del1acGac-22D.20.00015
ORF1ab/nsp1691T91MaCgaTg22P.1.120.000968
ORF1ab/nsp1691T91MaCgaTg22P.1.170.000324
ORF1ab/nsp1691T91TacGacT22P.1.170.000324
ORF1ab/nsp1691T91MaCgaTg22P.20.000373
ORF1ab/nsp1691T91MaCgaTg22R.10.00018
ORF1ab/nsp1691T91TacGacA110.055556
ORF1ab/nsp1691T91IaCGaTA110.055556
ORF1ab/nsp1691T91MaCgaTg110.055556
ORF1ab/nsp1691T91MaCgaTg11A.2.40.003367
ORF1ab/nsp1691T91del2ACG--C11All0
ORF1ab/nsp1691T91RaCgaGg11All0
ORF1ab/nsp1691T91LACgTTg11All0
ORF1ab/nsp1691T91MaCgaTg11AU.30.00211
ORF1ab/nsp1691T91TacGacA11AU.30.00211
ORF1ab/nsp1691T91LACgTTg11AY.1010.00049
ORF1ab/nsp1691T91AAcgGcg11AY.1030.000006
ORF1ab/nsp1691T91MaCgaTg11AY.1080.001103
ORF1ab/nsp1691T91TacGacT11AY.1090.00074
ORF1ab/nsp1691T91MaCgaTg11AY.1090.00074
ORF1ab/nsp1691T91TacGacT11AY.1110.000183
ORF1ab/nsp1691T91MaCgaTg11AY.1130.000142
ORF1ab/nsp1691T91MaCgaTg11AY.1140.000231
ORF1ab/nsp1691T91AAcgGcg11AY.1160.000287
ORF1ab/nsp1691T91TacGacA11AY.1160.000287
ORF1ab/nsp1691T91TacGacT11AY.1180.000063
ORF1ab/nsp1691T91del1aCga-g11AY.1200.000037
ORF1ab/nsp1691T91AAcgGcg11AY.120.10.000321
ORF1ab/nsp1691T91AAcgGcg11AY.1210.000135
ORF1ab/nsp1691T91TacGacT11AY.140.000088
ORF1ab/nsp1691T91MaCgaTg11AY.160.00038
ORF1ab/nsp1691T91MaCgaTg11AY.180.010101
ORF1ab/nsp1691T91delACG---11AY.250.000006
ORF1ab/nsp1691T91IaCGaTA11AY.250.000006
ORF1ab/nsp1691T91KaCgaAg11AY.250.000006
ORF1ab/nsp1691T91AAcgGcg11AY.260.000028
ORF1ab/nsp1691T91KaCgaAg11AY.290.000016
ORF1ab/nsp1691T91TacGacA11AY.29.10.000221
ORF1ab/nsp1691T91KaCgaAg11AY.30.00001
ORF1ab/nsp1691T91TacGacT11AY.3.10.000085
ORF1ab/nsp1691T91TacGacA11AY.320.000532
ORF1ab/nsp1691T91delACG---11AY.330.000067
ORF1ab/nsp1691T91MaCgaTg11AY.330.000067
ORF1ab/nsp1691T91TacGacT11AY.34.10.00051
ORF1ab/nsp1691T91MaCgaTg11AY.34.10.00051
ORF1ab/nsp1691T91TacGacT11AY.350.000233
ORF1ab/nsp1691T91TacGacT11AY.360.000148
ORF1ab/nsp1691T91AAcgGcg11AY.380.000499
ORF1ab/nsp1691T91MaCgaTg11AY.39.10.00004
ORF1ab/nsp1691T91SAcgTcg11AY.40.000002
ORF1ab/nsp1691T91TacGacT11AY.4.2.10.000149
ORF1ab/nsp1691T91AAcgGcg11AY.4.40.000409
ORF1ab/nsp1691T91delACG---11AY.4.50.000107
ORF1ab/nsp1691T91TacGacT11AY.410.000294
ORF1ab/nsp1691T91KaCgaAg11AY.430.000004
ORF1ab/nsp1691T91del1acGac-11AY.430.000004
ORF1ab/nsp1691T91KaCgaAg11AY.440.000006
ORF1ab/nsp1691T91MaCgaTg11AY.450.000122
ORF1ab/nsp1691T91TacGacA11AY.46.10.001027
ORF1ab/nsp1691T91del2ACG--C11AY.46.20.000635
ORF1ab/nsp1691T91IaCGaTA11AY.470.000031
ORF1ab/nsp1691T91MaCgaTg11AY.5.30.000337
ORF1ab/nsp1691T91TacGacT11AY.5.30.000337
ORF1ab/nsp1691T91TacGacT11AY.540.000095
ORF1ab/nsp1691T91MaCgaTg11AY.550.000917
ORF1ab/nsp1691T91MaCgaTg11AY.580.000907
ORF1ab/nsp1691T91MaCgaTg11AY.600.000938
ORF1ab/nsp1691T91TacGacT11AY.620.000436
ORF1ab/nsp1691T91TacGacT11AY.670.000464
ORF1ab/nsp1691T91MaCgaTg11AY.680.000274
ORF1ab/nsp1691T91TacGacT11AY.680.000274
ORF1ab/nsp1691T91MaCgaTg11AY.70.000196
ORF1ab/nsp1691T91TacGacT11AY.70.000196
ORF1ab/nsp1691T91TacGacT11AY.7.10.000113
ORF1ab/nsp1691T91MaCgaTg11AY.700.000209
ORF1ab/nsp1691T91TacGacT11AY.740.000116
ORF1ab/nsp1691T91IaCGaTA11AY.790.001211
ORF1ab/nsp1691T91TacGacA11AY.790.001211
ORF1ab/nsp1691T91MaCgaTg11AY.840.000437
ORF1ab/nsp1691T91SAcgTcg11AY.850.000427
ORF1ab/nsp1691T91IaCGaTA11AY.850.000427
ORF1ab/nsp1691T91MaCgaTg11AY.880.000884
ORF1ab/nsp1691T91TacGacT11AY.9.10.000084
ORF1ab/nsp1691T91TacGacT11AY.900.000684
ORF1ab/nsp1691T91MaCgaTg11AY.910.00073
ORF1ab/nsp1691T91MaCgaTg11AY.930.000273
ORF1ab/nsp1691T91TacGacT11AY.980.000079
ORF1ab/nsp1691T91MaCgaTg11AY.980.000079
ORF1ab/nsp1691T91TacGacT11AY.99.10.001553
ORF1ab/nsp1691T91PAcgCcg11B.10.000009
ORF1ab/nsp1691T91delACG---11B.10.000009
ORF1ab/nsp1691T91KaCgaAg11B.10.000009
ORF1ab/nsp1691T91del1acGac-11B.10.000009
ORF1ab/nsp1691T91MaCgaTg11B.1.1.10.000327
ORF1ab/nsp1691T91MaCgaTg11B.1.1.1170.009709
ORF1ab/nsp1691T91MaCgaTg11B.1.1.1760.000439
ORF1ab/nsp1691T91MaCgaTg11B.1.1.1980.001468
ORF1ab/nsp1691T91MaCgaTg11B.1.1.2130.021739
ORF1ab/nsp1691T91TacGacA11B.1.1.2200.001859
ORF1ab/nsp1691T91MaCgaTg11B.1.1.2200.001859
ORF1ab/nsp1691T91PAcgCcg11B.1.1.2220.000204
ORF1ab/nsp1691T91MaCgaTg11B.1.1.2410.00207
ORF1ab/nsp1691T91MaCgaTg11B.1.1.250.000569
ORF1ab/nsp1691T91MaCgaTg11B.1.1.2580.003257
ORF1ab/nsp1691T91MaCgaTg11B.1.1.2650.003155
ORF1ab/nsp1691T91MaCgaTg11B.1.1.2680.014925
ORF1ab/nsp1691T91TacGacT11B.1.1.2690.001353
ORF1ab/nsp1691T91MaCgaTg11B.1.1.2730.006757
ORF1ab/nsp1691T91TacGacT11B.1.1.2740.005051
ORF1ab/nsp1691T91MaCgaTg11B.1.1.3000.010753
ORF1ab/nsp1691T91MaCgaTg11B.1.1.3030.002762
ORF1ab/nsp1691T91MaCgaTg11B.1.1.3050.003861
ORF1ab/nsp1691T91TacGacT11B.1.1.3060.000438
ORF1ab/nsp1691T91TacGacT11B.1.1.3110.000358
ORF1ab/nsp1691T91TacGacT11B.1.1.3120.001912
ORF1ab/nsp1691T91TacGacT11B.1.1.3180.000302
ORF1ab/nsp1691T91MaCgaTg11B.1.1.3350.012987
ORF1ab/nsp1691T91MaCgaTg11B.1.1.3510.002793
ORF1ab/nsp1691T91MaCgaTg11B.1.1.3530.020833
ORF1ab/nsp1691T91MaCgaTg11B.1.1.3620.005618
ORF1ab/nsp1691T91MaCgaTg11B.1.1.3690.000446
ORF1ab/nsp1691T91TacGacT11B.1.1.370.000193
ORF1ab/nsp1691T91MaCgaTg11B.1.1.370.000193
ORF1ab/nsp1691T91TacGacT11B.1.1.3720.000689
ORF1ab/nsp1691T91TacGacT11B.1.1.3820.035714
ORF1ab/nsp1691T91MaCgaTg11B.1.1.4110.014706
ORF1ab/nsp1691T91TacGacT11B.1.1.4190.007407
ORF1ab/nsp1691T91MaCgaTg11B.1.1.4670.019231
ORF1ab/nsp1691T91MaCgaTg11B.1.1.4850.016667
ORF1ab/nsp1691T91TacGacA11B.1.1.500.000679
ORF1ab/nsp1691T91MaCgaTg11B.1.1.5170.006803
ORF1ab/nsp1691T91PAcgCcg11B.1.1.70.000001
ORF1ab/nsp1691T91del1acGac-11B.1.1.70.000001
ORF1ab/nsp1691T91TacGacT11B.1.1110.001175
ORF1ab/nsp1691T91delACG---11B.1.1400.018868
ORF1ab/nsp1691T91SAcgTcg11B.1.1600.000031
ORF1ab/nsp1691T91KaCgaAg11B.1.1600.000031
ORF1ab/nsp1691T91MaCgaTg11B.1.160.170.001701
ORF1ab/nsp1691T91delACG---11B.1.1610.017241
ORF1ab/nsp1691T91AAcgGcg11B.1.1770.000013
ORF1ab/nsp1691T91MaCgaTg11B.1.177.160.000664
ORF1ab/nsp1691T91TacGacA11B.1.177.270.009434
ORF1ab/nsp1691T91TacGacT11B.1.177.310.011494
ORF1ab/nsp1691T91TacGacT11B.1.177.380.010417
ORF1ab/nsp1691T91TacGacT11B.1.177.40.000211
ORF1ab/nsp1691T91TacGacA11B.1.177.480.003125
ORF1ab/nsp1691T91MaCgaTg11B.1.177.510.004566
ORF1ab/nsp1691T91MaCgaTg11B.1.177.560.000668
ORF1ab/nsp1691T91delACG---11B.1.177.620.001192
ORF1ab/nsp1691T91MaCgaTg11B.1.177.70.000165
ORF1ab/nsp1691T91SAcgTcg11B.1.20.000009
ORF1ab/nsp1691T91del1acGac-11B.1.20.000009
ORF1ab/nsp1691T91TacGacT11B.1.214.20.0006
ORF1ab/nsp1691T91TacGacT11B.1.220.001318
ORF1ab/nsp1691T91AAcgGcg11B.1.2210.000071
ORF1ab/nsp1691T91TacGacT11B.1.2340.000132
ORF1ab/nsp1691T91MaCgaTg11B.1.2400.000216
ORF1ab/nsp1691T91MaCgaTg11B.1.240.20.030303
ORF1ab/nsp1691T91MaCgaTg11B.1.2410.000812
ORF1ab/nsp1691T91delACG---11B.1.2580.000067
ORF1ab/nsp1691T91TacGacT11B.1.258.170.000104
ORF1ab/nsp1691T91MaCgaTg11B.1.258.30.001675
ORF1ab/nsp1691T91TacGacT11B.1.2790.000514
ORF1ab/nsp1691T91TacGacT11B.1.3190.003049
ORF1ab/nsp1691T91TacGacT11B.1.3200.001245
ORF1ab/nsp1691T91TacGacT11B.1.3320.003497
ORF1ab/nsp1691T91IaCGaTT11B.1.3510.00003
ORF1ab/nsp1691T91TacGacT11B.1.351.50.0006
ORF1ab/nsp1691T91MaCgaTg11B.1.351.50.0006
ORF1ab/nsp1691T91MaCgaTg11B.1.36.190.009259
ORF1ab/nsp1691T91MaCgaTg11B.1.36.260.002857
ORF1ab/nsp1691T91TacGacT11B.1.36.340.021277
ORF1ab/nsp1691T91MaCgaTg11B.1.36.350.002604
ORF1ab/nsp1691T91TacGacT11B.1.3610.001289
ORF1ab/nsp1691T91MaCgaTg11B.1.3930.028571
ORF1ab/nsp1691T91MaCgaTg11B.1.3960.000706
ORF1ab/nsp1691T91MaCgaTg11B.1.3980.002976
ORF1ab/nsp1691T91delACG---11B.1.4000.000429
ORF1ab/nsp1691T91MaCgaTg11B.1.4010.008197
ORF1ab/nsp1691T91MaCgaTg11B.1.4200.010417
ORF1ab/nsp1691T91IaCGaTT11B.1.4270.00005
ORF1ab/nsp1691T91TacGacT11B.1.4280.00102
ORF1ab/nsp1691T91KaCgaAg11B.1.4290.000024
ORF1ab/nsp1691T91PAcgCcg11B.1.4290.000024
ORF1ab/nsp1691T91MaCgaTg11B.1.438.10.000107
ORF1ab/nsp1691T91TacGacT11B.1.4680.005714
ORF1ab/nsp1691T91MaCgaTg11B.1.4970.000315
ORF1ab/nsp1691T91MaCgaTg11B.1.4990.00105
ORF1ab/nsp1691T91TacGacA11B.1.5200.021739
ORF1ab/nsp1691T91MaCgaTg11B.1.5230.002451
ORF1ab/nsp1691T91KaCGaAA11B.1.5250.000113
ORF1ab/nsp1691T91TacGacT11B.1.5330.009615
ORF1ab/nsp1691T91MaCgaTg11B.1.5390.017544
ORF1ab/nsp1691T91TacGacT11B.1.5610.000397
ORF1ab/nsp1691T91MaCgaTg11B.1.5620.018519
ORF1ab/nsp1691T91MaCgaTg11B.1.5650.00081
ORF1ab/nsp1691T91MaCgaTg11B.1.5680.001111
ORF1ab/nsp1691T91MaCgaTg11B.1.5750.000303
ORF1ab/nsp1691T91MaCgaTg11B.1.575.10.002439
ORF1ab/nsp1691T91TacGacT11B.1.5760.000907
ORF1ab/nsp1691T91MaCgaTg11B.1.5820.000491
ORF1ab/nsp1691T91MaCgaTg11B.1.5880.00091
ORF1ab/nsp1691T91MaCgaTg11B.1.5950.000261
ORF1ab/nsp1691T91delACG---11B.1.6200.000946
ORF1ab/nsp1691T91TacGacT11B.1.6230.000536
ORF1ab/nsp1691T91MaCgaTg11B.1.6230.000536
ORF1ab/nsp1691T91MaCgaTg11B.1.6250.002353
ORF1ab/nsp1691T91MaCgaTg11B.1.6280.000352
ORF1ab/nsp1691T91MaCgaTg11B.1.6350.017544
ORF1ab/nsp1691T91TacGacT11B.1.6370.000073
ORF1ab/nsp1691T91MaCgaTg11B.1.930.000934
ORF1ab/nsp1691T91MaCgaTg11B.30.000831
ORF1ab/nsp1691T91TacGacA11B.400.000364
ORF1ab/nsp1691T91TacGacT11B.6.30.026316
ORF1ab/nsp1691T91delACG---11B.610.005747
ORF1ab/nsp1691T91MaCgaTg11C.320.023256
ORF1ab/nsp1691T91AAcgGcg11C.36.30.000567
ORF1ab/nsp1691T91TacGacT11C.36.30.000567
ORF1ab/nsp1691T91KaCgaAg11C.370.000116
ORF1ab/nsp1691T91RaCgaGg11D.20.000075
ORF1ab/nsp1691T91MaCgaTg11N.50.001767
ORF1ab/nsp1691T91TacGacT11N.50.001767
ORF1ab/nsp1691T91IaCGaTA11P.10.000016
ORF1ab/nsp1691T91MaCgaTg11P.1.10.000318
ORF1ab/nsp1691T91MaCgaTg11P.1.130.000898
ORF1ab/nsp1691T91IaCGaTT11P.1.150.000232
ORF1ab/nsp1691T91MaCgaTg11P.1.60.001946
ORF1ab/nsp1691T91TacGacT11P.1.70.000319
ORF1ab/nsp1691T91TacGacT11Q.30.000145
ORF1ab/nsp1691T91TacGacT11Q.40.000455
ORF1ab/nsp1691T91TacGacA11Q.80.000165
ORF1ab/nsp1691T91MaCgaTg11W.40.001351