CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 91 | T91M | T6889M | nonsyn | aCg | aTg | 6288 | 6288 | 1 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91T | T6889T | syn | acG | acT | 4622 | 3352 | 0.725227 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91T | T6889T | syn | acG | acA | 4622 | 1260 | 0.272609 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91T | T6889T | syn | acG | acC | 4622 | 10 | 0.00216357 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91A | T6889A | nonsyn | Acg | Gcg | 96 | 94 | 0.979167 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91A | T6889A | nonsyn | AcG | GcA | 96 | 1 | 0.0104167 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91A | T6889A | nonsyn | AcG | GcT | 96 | 1 | 0.0104167 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91S | T6889S | nonsyn | Acg | Tcg | 49 | 49 | 1 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91del | T6889del | del | ACG | --- | 24 | 24 | 1 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91K | T6889K | nonsyn | aCg | aAg | 19 | 18 | 0.947368 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91K | T6889K | nonsyn | aCG | aAA | 19 | 1 | 0.0526316 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91del1 | T6889del1 | del | acG | ac- | 13 | 12 | 0.923077 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91del1 | T6889del1 | del | aCg | a-g | 13 | 1 | 0.0769231 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91I | T6889I | nonsyn | aCG | aTA | 11 | 6 | 0.545455 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91I | T6889I | nonsyn | aCG | aTT | 11 | 5 | 0.454545 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91P | T6889P | nonsyn | Acg | Ccg | 4 | 4 | 1 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91V | T6889V | nonsyn | ACG | GTA | 4 | 3 | 0.75 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91V | T6889V | nonsyn | ACg | GTg | 4 | 1 | 0.25 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91R | T6889R | nonsyn | aCg | aGg | 1 | 1 | 1 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91L | T6889L | nonsyn | ACg | TTg | 1 | 1 | 1 | 20929-20931 |
ORF1ab/nsp16 | 91 | T91del2 | T6889del2 | del | ACG | --C | 1 | 1 | 1 | 20929-20931 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6288 | 6288 | All | 0.001203 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 3352 | 4622 | All | 0.000641 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1260 | 4622 | All | 0.000241 |
ORF1ab/nsp16 | 91 | T91T | acG | acC | 10 | 4622 | All | 0.000002 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1753 | 1753 | B.1.1.7 | 0.001569 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 744 | 745 | B.1.427 | 0.03757 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 745 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 670 | 670 | AY.44 | 0.004078 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 631 | 656 | P.1 | 0.009941 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 25 | 656 | P.1 | 0.000394 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 483 | 483 | AY.4 | 0.000752 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 231 | 444 | B.1.1.7 | 0.000207 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 213 | 444 | B.1.1.7 | 0.000191 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 442 | 442 | C.35 | 0.342105 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 265 | 265 | P.1.2 | 0.306358 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 264 | 264 | AY.56 | 0.423756 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 224 | 253 | AY.4 | 0.000349 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 28 | 253 | AY.4 | 0.000044 |
ORF1ab/nsp16 | 91 | T91T | acG | acC | 1 | 253 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 216 | 216 | AY.65 | 0.115139 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 208 | 208 | B.1.617.2 | 0.000783 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 199 | 199 | B.1.177.54 | 0.120679 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 153 | 153 | AY.103 | 0.00095 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 144 | 144 | AY.43 | 0.000638 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 123 | 132 | B.1.617.2 | 0.000463 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 8 | 132 | B.1.617.2 | 0.00003 |
ORF1ab/nsp16 | 91 | T91T | acG | acC | 1 | 132 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 109 | 122 | B.1 | 0.000998 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 13 | 122 | B.1 | 0.000119 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 117 | 117 | B.1.177 | 0.001541 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 113 | 113 | P.1 | 0.00178 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 98 | 103 | AY.3 | 0.000975 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 5 | 103 | AY.3 | 0.00005 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 102 | 102 | B.1.2 | 0.000898 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 98 | 98 | B.1 | 0.000898 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 94 | 96 | All | 0.000018 |
ORF1ab/nsp16 | 91 | T91A | AcG | GcA | 1 | 96 | All | 0 |
ORF1ab/nsp16 | 91 | T91A | AcG | GcT | 1 | 96 | All | 0 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 68 | 88 | B.1.351 | 0.002021 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 20 | 88 | B.1.351 | 0.000595 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 72 | 72 | AY.87 | 0.05995 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 71 | 71 | AY.25 | 0.000427 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 60 | 71 | AY.43 | 0.000266 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 11 | 71 | AY.43 | 0.000049 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 71 | 71 | B.1.525 | 0.008034 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 59 | 59 | B.1.177.81 | 0.01117 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 56 | 56 | B.1.243 | 0.003897 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 55 | 55 | AY.120 | 0.002045 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 51 | 51 | P.1.15 | 0.011849 |
ORF1ab/nsp16 | 91 | T91S | Acg | Tcg | 49 | 49 | All | 0.000009 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 49 | 49 | B.1.620 | 0.046358 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 34 | 47 | B.1.2 | 0.000299 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 13 | 47 | B.1.2 | 0.000114 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 45 | 45 | P.1.7 | 0.014368 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 41 | 43 | AY.102 | 0.001087 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 43 | AY.102 | 0.000053 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 43 | 43 | AY.3 | 0.000428 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 42 | 42 | B.1.160 | 0.00131 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 20 | 40 | AY.44 | 0.000122 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 17 | 40 | AY.44 | 0.000103 |
ORF1ab/nsp16 | 91 | T91T | acG | acC | 3 | 40 | AY.44 | 0.000018 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 40 | 40 | AY.9.2 | 0.001469 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 37 | 38 | B.1.1 | 0.000671 |
ORF1ab/nsp16 | 91 | T91T | acG | acC | 1 | 38 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 38 | 38 | B.1.173 | 1 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 37 | 37 | B.1.351 | 0.0011 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 37 | 37 | B.1.526 | 0.00087 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 33 | 35 | B.1.429 | 0.000776 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 35 | B.1.429 | 0.000047 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 22 | 34 | AY.103 | 0.000137 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 12 | 34 | AY.103 | 0.000075 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 20 | 34 | AY.25 | 0.00012 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 14 | 34 | AY.25 | 0.000084 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 34 | 34 | B.1.1 | 0.000617 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 30 | 33 | AY.39 | 0.000741 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 3 | 33 | AY.39 | 0.000074 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 31 | 31 | B.1.258.17 | 0.003223 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 30 | 30 | B.1.429 | 0.000706 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 29 | 29 | AY.118 | 0.001817 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 28 | 29 | AY.9.2 | 0.001028 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 29 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 29 | 29 | B.1.36.16 | 0.041311 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 27 | 27 | AY.39 | 0.000667 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 26 | 27 | B.1.160 | 0.000811 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 27 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 26 | 26 | AY.29 | 0.00041 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 25 | 25 | AY.100 | 0.00115 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 24 | 25 | B.1.1.432 | 0.03038 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 25 | B.1.1.432 | 0.001266 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 24 | 24 | All | 0.000005 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 24 | 24 | AY.102 | 0.000636 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 23 | 23 | AY.75 | 0.001289 |
ORF1ab/nsp16 | 91 | T91S | Acg | Tcg | 23 | 23 | B.1.177.21 | 0.001759 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 22 | 22 | AY.14 | 0.001936 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 22 | 22 | AY.52 | 0.017915 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 21 | 21 | AY.5 | 0.000434 |
ORF1ab/nsp16 | 91 | T91S | Acg | Tcg | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 17 | 20 | B.1.596 | 0.001481 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 3 | 20 | B.1.596 | 0.000261 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 18 | 19 | All | 0.000003 |
ORF1ab/nsp16 | 91 | T91K | aCG | aAA | 1 | 19 | All | 0 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 19 | 19 | AY.4.2 | 0.000412 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 19 | 19 | AY.98.1 | 0.00092 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 19 | 19 | B.1.1.519 | 0.000755 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 17 | 17 | AY.20 | 0.000661 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 17 | 17 | AY.61 | 0.001781 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 17 | 17 | B.1.1.341 | 1 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 10 | 17 | B.1.621 | 0.000885 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 7 | 17 | B.1.621 | 0.00062 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 17 | 17 | B.1.637 | 0.001242 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 17 | 17 | Q.8 | 0.002803 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 15 | 16 | AY.33 | 0.001002 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 16 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 16 | 16 | AY.41 | 0.004703 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 16 | 16 | AY.78 | 0.024653 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 16 | 16 | AY.98.1 | 0.000775 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 11 | 16 | B.1.177 | 0.000145 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 5 | 16 | B.1.177 | 0.000066 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 16 | 16 | B.1.258.17 | 0.001664 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 15 | 16 | B.1.438.1 | 0.001609 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 16 | B.1.438.1 | 0.000107 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 15 | 15 | AY.119 | 0.00053 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 15 | 15 | AY.46.4 | 0.002468 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 14 | 14 | AY.75.1 | 0.002524 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 14 | 14 | B.1.1.374 | 0.033254 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 14 | 14 | B.1.399 | 0.027079 |
ORF1ab/nsp16 | 91 | T91del1 | acG | ac- | 12 | 13 | All | 0.000002 |
ORF1ab/nsp16 | 91 | T91del1 | aCg | a-g | 1 | 13 | All | 0 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 12 | 13 | AY.26 | 0.00034 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 13 | AY.26 | 0.000028 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 13 | 13 | AY.27 | 0.000841 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 8 | 13 | AY.5 | 0.000165 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 5 | 13 | AY.5 | 0.000103 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 13 | 13 | AY.9.1 | 0.001088 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 13 | 13 | B.1.311 | 0.003569 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 13 | 13 | B.1.36.35 | 0.033854 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | AY.4.3 | 0.010101 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 10 | 12 | AY.75 | 0.00056 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 12 | AY.75 | 0.000112 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | B.1.1.398 | 0.03871 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 6 | 12 | B.1.1.519 | 0.000238 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 6 | 12 | B.1.1.519 | 0.000238 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 10 | 12 | B.1.221 | 0.00071 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 12 | B.1.221 | 0.000142 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | B.1.369 | 0.003423 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 12 | 12 | B.1.517 | 0.005124 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | B.1.525 | 0.001358 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 12 | 12 | C.35 | 0.009288 |
ORF1ab/nsp16 | 91 | T91I | aCG | aTA | 6 | 11 | All | 0.000001 |
ORF1ab/nsp16 | 91 | T91I | aCG | aTT | 5 | 11 | All | 0.000001 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 11 | 11 | AY.121 | 0.001488 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 11 | 11 | AY.23 | 0.000767 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 11 | 11 | B.1.177.65 | 0.007319 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 11 | 11 | B.1.177.86 | 0.002018 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 11 | 11 | B.1.177.87 | 0.008006 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 11 | 11 | B.1.427 | 0.000555 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 8 | 10 | AY.23 | 0.000558 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 10 | AY.23 | 0.000139 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 10 | 10 | AY.59 | 0.005297 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 10 | 10 | AY.6 | 0.000411 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 10 | 10 | AY.99 | 0.010493 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 6 | 10 | C.37 | 0.000696 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 4 | 10 | C.37 | 0.000464 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 8 | 9 | AY.3 | 0.00008 |
ORF1ab/nsp16 | 91 | T91A | AcG | GcT | 1 | 9 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 9 | 9 | B.1.1.417 | 0.024324 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 9 | 9 | B.1.177.21 | 0.000688 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 9 | 9 | B.1.177.82 | 0.004296 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 8 | 9 | B.1.526 | 0.000188 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 9 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 7 | 9 | B.1.617.1 | 0.000903 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 9 | B.1.617.1 | 0.000258 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 8 | 9 | P.1.1 | 0.002541 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 9 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 9 | 9 | P.1.12 | 0.004356 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | AY.24 | 0.003448 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | AY.48 | 0.003721 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 7 | 8 | AY.9 | 0.000473 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 8 | AY.9 | 0.000068 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 8 | 8 | B.1.177.60 | 0.001747 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 5 | 8 | P.1.14 | 0.000239 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 3 | 8 | P.1.14 | 0.000143 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 8 | 8 | Q.1 | 0.001011 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | AY.111 | 0.001282 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 7 | 7 | B.1.1.170 | 0.008728 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.1.192 | 0.016166 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.1.263 | 0.010903 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 7 | 7 | B.1.1.284 | 0.000752 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.1.318 | 0.002112 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.599 | 0.025547 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | B.1.78 | 0.059829 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 3 | 6 | AY.20 | 0.000117 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 3 | 6 | AY.20 | 0.000117 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 4 | 6 | AY.29 | 0.000063 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 6 | AY.29 | 0.000032 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 5 | 6 | AY.39.1 | 0.000198 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 6 | AY.39.1 | 0.00004 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | AZ.4 | 0.020134 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | B.1.177.87 | 0.004367 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 6 | 6 | B.1.551 | 0.007742 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 5 | 5 | AY.105 | 0.003215 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 5 | 5 | AY.38 | 0.002496 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 5 | 5 | AY.82 | 0.006784 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 5 | 5 | AZ.2 | 0.004105 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 5 | 5 | B.1.349 | 0.003574 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 4 | 5 | P.1.16 | 0.001496 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 5 | P.1.16 | 0.000374 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 5 | 5 | Z.1 | 0.014451 |
ORF1ab/nsp16 | 91 | T91V | ACG | GTA | 3 | 4 | 0.166667 | |
ORF1ab/nsp16 | 91 | T91V | ACg | GTg | 1 | 4 | 0.055556 | |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 4 | 4 | A.23.1 | 0.002817 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp16 | 91 | T91P | Acg | Ccg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp16 | 91 | T91V | ACG | GTA | 3 | 4 | All | 0.000001 |
ORF1ab/nsp16 | 91 | T91V | ACg | GTg | 1 | 4 | All | 0 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | AU.1 | 0.005063 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 4 | AY.113 | 0.000285 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 4 | AY.113 | 0.000285 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 4 | AY.34 | 0.000194 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 4 | AY.34 | 0.000194 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 4 | AY.45 | 0.000243 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 4 | AY.45 | 0.000243 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 4 | AY.61 | 0.00021 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 4 | AY.61 | 0.00021 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 4 | 4 | B | 0.000511 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.1.112 | 0.235294 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.177.12 | 0.000607 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | B.1.438 | 0.026144 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 3 | 3 | AY.11 | 0.004016 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.28 | 0.005671 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 3 | AY.42 | 0.00008 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 3 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 3 | AY.6 | 0.000082 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 3 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B | 0.000383 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 3 | 3 | B.1.128 | 0.001906 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.179 | 0.011278 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.221.2 | 0.012048 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 3 | 3 | B.1.406 | 0.018182 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 3 | B.1.466.2 | 0.000782 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 3 | B.1.466.2 | 0.000391 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | B.1.571 | 0.029126 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 3 | D.2 | 0.00015 |
ORF1ab/nsp16 | 91 | T91T | acG | acC | 1 | 3 | D.2 | 0.000075 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 3 | P.2 | 0.000373 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 3 | P.2 | 0.000187 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 3 | R.1 | 0.00018 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 3 | R.1 | 0.00009 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 91 | T91del1 | acG | ac- | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 91 | T91A | AcG | GcA | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 2 | AP.1 | 0.003003 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 2 | AY.108 | 0.001103 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 2 | AY.108 | 0.001103 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp16 | 91 | T91T | acG | acC | 1 | 2 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 2 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 91 | T91T | acG | acC | 1 | 2 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 2 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 91 | T91del1 | acG | ac- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | AY.5.1 | 0.007519 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp16 | 91 | T91I | aCG | aTT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 2 | AY.75.1 | 0.00018 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 2 | AY.75.1 | 0.00018 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.118 | 0.020408 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.1.192 | 0.004619 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.170 | 0.008621 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.221.2 | 0.008032 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.408 | 0.00738 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 2 | B.1.462 | 0.007246 |
ORF1ab/nsp16 | 91 | T91T | acG | acC | 1 | 2 | B.1.462 | 0.007246 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.527 | 0.007407 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 91 | T91S | Acg | Tcg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 91 | T91del1 | acG | ac- | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | B.39 | 0.004662 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 2 | C.36 | 0.000911 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 2 | C.36 | 0.000911 |
ORF1ab/nsp16 | 91 | T91del1 | acG | ac- | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 91 | T91I | aCG | aTA | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp16 | 91 | T91del2 | ACG | --C | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 91 | T91R | aCg | aGg | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 91 | T91L | ACg | TTg | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp16 | 91 | T91L | ACg | TTg | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp16 | 91 | T91del1 | aCg | a-g | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.18 | 0.010101 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 91 | T91I | aCG | aTA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp16 | 91 | T91S | Acg | Tcg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 91 | T91del1 | acG | ac- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp16 | 91 | T91del2 | ACG | --C | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp16 | 91 | T91I | aCG | aTA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp16 | 91 | T91I | aCG | aTA | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 91 | T91S | Acg | Tcg | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp16 | 91 | T91I | aCG | aTA | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp16 | 91 | T91P | Acg | Ccg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 91 | T91del1 | acG | ac- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.213 | 0.021739 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp16 | 91 | T91P | Acg | Ccg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.268 | 0.014925 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.300 | 0.010753 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.353 | 0.020833 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.1.382 | 0.035714 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.467 | 0.019231 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp16 | 91 | T91P | Acg | Ccg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 91 | T91del1 | acG | ac- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp16 | 91 | T91S | Acg | Tcg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | B.1.177.27 | 0.009434 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.177.38 | 0.010417 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 91 | T91S | Acg | Tcg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 91 | T91del1 | acG | ac- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.240.2 | 0.030303 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp16 | 91 | T91I | aCG | aTT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.36.34 | 0.021277 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp16 | 91 | T91I | aCG | aTT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 91 | T91P | Acg | Ccg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp16 | 91 | T91K | aCG | aAA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.539 | 0.017544 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.562 | 0.018519 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.635 | 0.017544 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | B.6.3 | 0.026316 |
ORF1ab/nsp16 | 91 | T91del | ACG | --- | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | C.32 | 0.023256 |
ORF1ab/nsp16 | 91 | T91A | Acg | Gcg | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp16 | 91 | T91K | aCg | aAg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 91 | T91R | aCg | aGg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp16 | 91 | T91I | aCG | aTA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp16 | 91 | T91I | aCG | aTT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp16 | 91 | T91T | acG | acT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp16 | 91 | T91T | acG | acA | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp16 | 91 | T91M | aCg | aTg | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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