CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 7 | P7P | P6805P | syn | ccG | ccT | 15054 | 13058 | 0.867411 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7P | P6805P | syn | ccG | ccA | 15054 | 1956 | 0.129932 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7P | P6805P | syn | ccG | ccC | 15054 | 40 | 0.0026571 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7S | P6805S | nonsyn | Ccg | Tcg | 631 | 626 | 0.992076 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7S | P6805S | nonsyn | CcG | TcC | 631 | 3 | 0.00475436 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7S | P6805S | nonsyn | CcG | TcA | 631 | 1 | 0.00158479 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7S | P6805S | nonsyn | CcG | TcT | 631 | 1 | 0.00158479 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7del | P6805del | del | CCG | --- | 55 | 55 | 1 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7L | P6805L | nonsyn | cCg | cTg | 17 | 14 | 0.823529 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7L | P6805L | nonsyn | cCG | cTA | 17 | 3 | 0.176471 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7T | P6805T | nonsyn | Ccg | Acg | 12 | 9 | 0.75 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7T | P6805T | nonsyn | CcG | AcT | 12 | 3 | 0.25 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7del1 | P6805del1 | del | ccG | cc- | 6 | 4 | 0.666667 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7K | P6805K | nonsyn | CCG | AAA | 6 | 4 | 0.666667 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7K | P6805K | nonsyn | CCg | AAg | 6 | 2 | 0.333333 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7del1 | P6805del1 | del | Ccg | -cg | 6 | 1 | 0.166667 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7del1 | P6805del1 | del | cCG | cT- | 6 | 1 | 0.166667 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7Q | P6805Q | nonsyn | cCg | cAg | 5 | 5 | 1 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7H | P6805H | nonsyn | cCG | cAT | 4 | 4 | 1 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7M | P6805M | nonsyn | CCg | ATg | 3 | 3 | 1 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7A | P6805A | nonsyn | Ccg | Gcg | 3 | 2 | 0.666667 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7A | P6805A | nonsyn | CcG | GcC | 3 | 1 | 0.333333 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7del2 | P6805del2 | del | CCg | --g | 1 | 1 | 1 | 20677-20679 |
ORF1ab/nsp16 | 7 | P7R | P6805R | nonsyn | cCG | cGA | 1 | 1 | 1 | 20677-20679 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 13058 | 15054 | All | 0.002497 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1956 | 15054 | All | 0.000374 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 40 | 15054 | All | 0.000008 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3499 | 3572 | B.1.617.2 | 0.013175 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 69 | 3572 | B.1.617.2 | 0.00026 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 4 | 3572 | B.1.617.2 | 0.000015 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 746 | 1357 | AY.4 | 0.001161 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 608 | 1357 | AY.4 | 0.000946 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 3 | 1357 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1281 | 1303 | AY.100 | 0.058934 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 14 | 1303 | AY.100 | 0.000644 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 8 | 1303 | AY.100 | 0.000368 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 793 | 1212 | B.1.1.7 | 0.00071 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 414 | 1212 | B.1.1.7 | 0.000371 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 5 | 1212 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1143 | 1161 | AY.43 | 0.005064 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 18 | 1161 | AY.43 | 0.00008 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 955 | 955 | B.1.497 | 0.300598 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 626 | 632 | AY.61 | 0.065591 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 6 | 632 | AY.61 | 0.000629 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 626 | 631 | All | 0.00012 |
ORF1ab/nsp16 | 7 | P7S | CcG | TcC | 3 | 631 | All | 0.000001 |
ORF1ab/nsp16 | 7 | P7S | CcG | TcT | 1 | 631 | All | 0 |
ORF1ab/nsp16 | 7 | P7S | CcG | TcA | 1 | 631 | All | 0 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 455 | 512 | AY.103 | 0.002825 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 56 | 512 | AY.103 | 0.000348 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 1 | 512 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 349 | 380 | B.1.621 | 0.030893 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 31 | 380 | B.1.621 | 0.002744 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 257 | 257 | AY.39.1 | 0.010181 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 213 | 247 | AY.44 | 0.001296 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 34 | 247 | AY.44 | 0.000207 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 158 | 158 | B.1.1.7 | 0.000141 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 127 | 154 | B.1.2 | 0.001118 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 27 | 154 | B.1.2 | 0.000238 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 119 | 152 | B.1 | 0.00109 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 33 | 152 | B.1 | 0.000302 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 114 | 150 | AY.25 | 0.000686 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 32 | 150 | AY.25 | 0.000192 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 4 | 150 | AY.25 | 0.000024 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 121 | 125 | B.1.177 | 0.001593 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 4 | 125 | B.1.177 | 0.000053 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 108 | 110 | AY.102 | 0.002864 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 110 | AY.102 | 0.000053 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 102 | 105 | B.1.429 | 0.0024 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 3 | 105 | B.1.429 | 0.000071 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 95 | 95 | B.1.580 | 0.386179 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 84 | 95 | P.1 | 0.001323 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 11 | 95 | P.1 | 0.000173 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 87 | 87 | AY.3 | 0.000865 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 86 | 87 | P.1.2 | 0.099422 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 87 | P.1.2 | 0.001156 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 78 | 85 | AY.39 | 0.001927 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 6 | 85 | AY.39 | 0.000148 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 1 | 85 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 55 | 69 | B.1.1 | 0.000998 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 14 | 69 | B.1.1 | 0.000254 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 52 | 67 | B.1.160 | 0.001622 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 15 | 67 | B.1.160 | 0.000468 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 44 | 62 | AY.29 | 0.000694 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 17 | 62 | AY.29 | 0.000268 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 1 | 62 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 59 | 60 | AY.75.1 | 0.010638 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 60 | AY.75.1 | 0.00018 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 55 | 55 | All | 0.000011 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 52 | 52 | AY.4 | 0.000081 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 46 | 50 | B.1.526 | 0.001081 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 4 | 50 | B.1.526 | 0.000094 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 30 | 48 | AY.4.2 | 0.000651 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 16 | 48 | AY.4.2 | 0.000347 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 2 | 48 | AY.4.2 | 0.000043 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 43 | 45 | AY.23 | 0.002999 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 45 | AY.23 | 0.000139 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 42 | 42 | AY.111 | 0.007692 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 42 | 42 | B.1.1 | 0.000762 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 38 | 39 | AY.46 | 0.003955 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 39 | AY.46 | 0.000104 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 36 | 39 | B.1.351 | 0.00107 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 3 | 39 | B.1.351 | 0.000089 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 24 | 36 | AY.3 | 0.000239 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 12 | 36 | AY.3 | 0.000119 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 35 | 36 | AY.64 | 0.020833 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 36 | AY.64 | 0.000595 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 33 | 36 | B.1.525 | 0.003734 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 3 | 36 | B.1.525 | 0.000339 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 26 | 35 | AY.119 | 0.000918 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 9 | 35 | AY.119 | 0.000318 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 34 | 34 | B.1.575 | 0.010316 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 33 | 33 | AY.16.1 | 0.015508 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 32 | 33 | AY.20 | 0.001244 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 33 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 31 | 32 | AY.42 | 0.001247 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 32 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 31 | 31 | B.1.1.28 | 0.009648 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 30 | 31 | B.1.1.33 | 0.012626 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 31 | B.1.1.33 | 0.000421 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 30 | 30 | AY.117 | 0.002535 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 28 | 29 | P.1.7 | 0.00894 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 29 | P.1.7 | 0.000319 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 28 | 28 | AY.103 | 0.000174 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 19 | 28 | B.1.1.519 | 0.000755 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 9 | 28 | B.1.1.519 | 0.000357 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 27 | 27 | AC.1 | 1 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 27 | 27 | B.1.617.1 | 0.003482 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 26 | 26 | AY.4.2.1 | 0.003874 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 26 | 26 | B.1.596 | 0.002266 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 25 | 25 | AY.78 | 0.038521 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 25 | 25 | B.1.177 | 0.000329 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 24 | 24 | AD.2 | 0.005255 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 20 | 24 | AY.6 | 0.000823 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 4 | 24 | AY.6 | 0.000165 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 19 | 24 | B | 0.002428 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 24 | B | 0.000639 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 24 | 24 | B.1.346 | 0.031455 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 22 | 22 | B.1.36 | 0.00321 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 22 | 22 | B.1.627 | 0.044444 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 20 | 22 | P.2 | 0.003733 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 22 | P.2 | 0.000373 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 18 | 21 | AY.26 | 0.00051 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 3 | 21 | AY.26 | 0.000085 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 17 | 21 | AY.5 | 0.000351 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 4 | 21 | AY.5 | 0.000083 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 21 | 21 | AY.55 | 0.019266 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 20 | 21 | B.1.1.222 | 0.00408 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 21 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 20 | 20 | B.1.1.524 | 0.416667 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 17 | 18 | AY.9.2 | 0.000624 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 18 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 18 | 18 | B.1.36.8 | 0.018 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 14 | 17 | All | 0.000003 |
ORF1ab/nsp16 | 7 | P7L | cCG | cTA | 3 | 17 | All | 0.000001 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 15 | 17 | AY.34 | 0.001454 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 17 | AY.34 | 0.000194 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 12 | 17 | AY.46.6 | 0.000866 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 5 | 17 | AY.46.6 | 0.000361 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 17 | 17 | B.1.526 | 0.0004 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 10 | 16 | AY.98 | 0.00079 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 6 | 16 | AY.98 | 0.000474 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 16 | 16 | B.1.1.25 | 0.009096 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 12 | 14 | AY.118 | 0.000752 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 14 | AY.118 | 0.000125 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 14 | 14 | AY.19 | 0.015964 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 14 | 14 | B.1.1.317 | 0.005764 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 11 | 14 | C.37 | 0.001277 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 14 | C.37 | 0.000348 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 12 | 14 | P.1.14 | 0.000574 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 14 | P.1.14 | 0.000096 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 13 | 13 | AY.33 | 0.000868 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 11 | 13 | AY.47 | 0.000342 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 13 | AY.47 | 0.000062 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 13 | 13 | B.1.177.81 | 0.002461 |
ORF1ab/nsp16 | 7 | P7T | Ccg | Acg | 9 | 12 | All | 0.000002 |
ORF1ab/nsp16 | 7 | P7T | CcG | AcT | 3 | 12 | All | 0.000001 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 10 | 12 | AY.13 | 0.00161 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 12 | AY.13 | 0.000322 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 12 | 12 | AY.75 | 0.000672 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 9 | 12 | B.1.1.284 | 0.000967 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 12 | B.1.1.284 | 0.000322 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 12 | 12 | B.1.427 | 0.000606 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 12 | 12 | P.1.15 | 0.002788 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 10 | 11 | AY.106 | 0.003349 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 11 | AY.106 | 0.000335 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 10 | 11 | AY.3.1 | 0.000853 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 11 | AY.3.1 | 0.000085 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 11 | 11 | AY.4.5 | 0.001182 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 11 | 11 | AY.45 | 0.001339 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 11 | 11 | B.1.1.306 | 0.004822 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 11 | 11 | B.1.1.405 | 0.916667 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 11 | 11 | B.1.1.47 | 0.058824 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 8 | 11 | B.1.177.86 | 0.001468 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 11 | B.1.177.86 | 0.00055 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 11 | 11 | B.1.371 | 0.012346 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 6 | 11 | Q.8 | 0.000989 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 11 | Q.8 | 0.000825 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 10 | 10 | AY.5.3 | 0.003374 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 8 | 10 | AY.98.1 | 0.000387 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 10 | AY.98.1 | 0.000097 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 9 | 10 | C.36.3 | 0.005105 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 10 | C.36.3 | 0.000567 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp16 | 7 | P7T | Ccg | Acg | 8 | 9 | B.1.1.7 | 0.000007 |
ORF1ab/nsp16 | 7 | P7T | CcG | AcT | 1 | 9 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 6 | 9 | B.1.234 | 0.000792 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 9 | B.1.234 | 0.000396 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 9 | 9 | B.1.628 | 0.003171 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 9 | 9 | P.1.16 | 0.003367 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 8 | 8 | 0.444444 | |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 6 | 8 | AY.120 | 0.000223 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 8 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 4 | 8 | AY.27 | 0.000259 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 8 | AY.27 | 0.000259 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 7 | 8 | B.1.1.305 | 0.027027 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 8 | B.1.1.305 | 0.003861 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 6 | 8 | B.1.258 | 0.000399 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 8 | B.1.258 | 0.000133 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 8 | 8 | B.1.351.2 | 0.002421 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 8 | 8 | B.6.6 | 0.007111 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 7 | 7 | AY.34.1 | 0.00357 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 7 | 7 | AY.38 | 0.003495 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 6 | 7 | AY.65 | 0.003198 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 7 | AY.65 | 0.000533 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 7 | 7 | B.1.111 | 0.008226 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 6 | 7 | B.1.36.17 | 0.002964 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 1 | 7 | B.1.36.17 | 0.000494 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 7 | 7 | C.18 | 0.018135 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 6 | 6 | AE.8 | 0.002934 |
ORF1ab/nsp16 | 7 | P7K | CCG | AAA | 4 | 6 | All | 0.000001 |
ORF1ab/nsp16 | 7 | P7del1 | ccG | cc- | 4 | 6 | All | 0.000001 |
ORF1ab/nsp16 | 7 | P7K | CCg | AAg | 2 | 6 | All | 0 |
ORF1ab/nsp16 | 7 | P7del1 | cCG | cT- | 1 | 6 | All | 0 |
ORF1ab/nsp16 | 7 | P7del1 | Ccg | -cg | 1 | 6 | All | 0 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 6 | AY.4.5 | 0.000537 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 6 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 6 | AY.46.2 | 0.001906 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 3 | 6 | AY.46.2 | 0.001906 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 6 | AY.52 | 0.003257 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 6 | AY.52 | 0.001629 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 6 | 6 | AY.71 | 0.00285 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 6 | 6 | B.1.1.121 | 0.014563 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 6 | B.1.1.216 | 0.004452 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 6 | B.1.1.216 | 0.00089 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 6 | B.1.221 | 0.000355 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 6 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 6 | B.1.258.17 | 0.000416 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 6 | B.1.258.17 | 0.000208 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 6 | 6 | B.1.462 | 0.043478 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 6 | 6 | B.1.517 | 0.002562 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 4 | 6 | P.1.12 | 0.001936 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 6 | P.1.12 | 0.000968 |
ORF1ab/nsp16 | 7 | P7Q | cCg | cAg | 5 | 5 | All | 0.000001 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 5 | AY.109 | 0.002959 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 5 | AY.109 | 0.00074 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 4 | 5 | AY.43 | 0.000018 |
ORF1ab/nsp16 | 7 | P7S | CcG | TcA | 1 | 5 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 4 | 5 | AY.46.4 | 0.000658 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 5 | AY.46.4 | 0.000165 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 5 | AY.67 | 0.001857 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 5 | AY.67 | 0.000464 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | AY.68 | 0.001369 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | B.1.1.189 | 0.007564 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 5 | 5 | B.1.1.267 | 0.050505 |
ORF1ab/nsp16 | 7 | P7K | CCG | AAA | 3 | 5 | B.1.1.7 | 0.000003 |
ORF1ab/nsp16 | 7 | P7K | CCg | AAg | 2 | 5 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | B.1.177.43 | 0.007386 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | B.1.241 | 0.004058 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | B.1.265 | 0.006353 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | B.1.36.1 | 0.005701 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 4 | 5 | B.4 | 0.00883 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 5 | B.4 | 0.002208 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | B.40 | 0.001821 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 5 | 5 | P.5 | 0.068493 |
ORF1ab/nsp16 | 7 | P7H | cCG | cAT | 4 | 4 | All | 0.000001 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | AY.62 | 0.001743 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 4 | AY.9 | 0.000135 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 4 | AY.9 | 0.000135 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp16 | 7 | P7S | CcG | TcC | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | B.1.1.170 | 0.004988 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | B.1.1.207 | 0.004728 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 4 | 4 | B.1.1.228 | 0.012195 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | B.1.1.254 | 0.044944 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | B.1.22.1 | 0.125 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | B.1.351.3 | 0.003506 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 3 | 4 | B.1.367 | 0.002377 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 4 | B.1.367 | 0.000792 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | B.1.564 | 0.001704 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 4 | B.1.609 | 0.001438 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 4 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | B.1.623 | 0.002146 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 4 | 4 | B.23 | 0.011696 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 4 | Q.1 | 0.000253 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 1 | 4 | Q.1 | 0.000126 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 4 | Q.1 | 0.000126 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 4 | 4 | Y.1 | 0.051282 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp16 | 7 | P7M | CCg | ATg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp16 | 7 | P7A | Ccg | Gcg | 2 | 3 | All | 0 |
ORF1ab/nsp16 | 7 | P7A | CcG | GcC | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | AY.23.1 | 0.001252 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 3 | AY.36 | 0.000296 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 3 | AY.36 | 0.000148 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | AY.46.3 | 0.002801 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 3 | AY.7 | 0.000392 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 3 | AY.7 | 0.000196 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | AY.87 | 0.002498 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp16 | 7 | P7H | cCG | cAT | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 3 | B.1.1.70 | 0.000682 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 3 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | B.1.160.16 | 0.002788 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp16 | 7 | P7L | cCG | cTA | 3 | 3 | B.1.235 | 0.007557 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 3 | B.1.438.1 | 0.000215 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 3 | B.1.438.1 | 0.000107 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 3 | B.1.637 | 0.000146 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 3 | B.1.637 | 0.000073 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 3 | 3 | C.28 | 0.12 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 2 | 2 | A | 0.000774 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AE.1 | 0.022727 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 2 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 2 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.22 | 0.004184 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.5.2 | 0.004926 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.81 | 0.003984 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.160.14 | 0.004237 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 2 | B.1.160.29 | 0.008439 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 2 | B.1.177.80 | 0.003824 |
ORF1ab/nsp16 | 7 | P7T | Ccg | Acg | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 7 | P7T | CcG | AcT | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.258.12 | 0.015748 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.36.26 | 0.005714 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 2 | B.1.369 | 0.000285 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 2 | B.1.369 | 0.000285 |
ORF1ab/nsp16 | 7 | P7S | CcG | TcT | 1 | 2 | B.1.416 | 0.001269 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 2 | B.1.416 | 0.001269 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.425 | 0.005988 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 2 | B.1.565 | 0.00081 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 2 | B.1.565 | 0.00081 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp16 | 7 | P7S | CcG | TcC | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp16 | 7 | P7del1 | ccG | cc- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 7 | P7del1 | cCG | cT- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 2 | C.36 | 0.000911 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 2 | C.36 | 0.000911 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 7 | P7Q | cCg | cAg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | A.4 | 0.012821 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | A.7 | 0.055556 |
ORF1ab/nsp16 | 7 | P7M | CCg | ATg | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp16 | 7 | P7del2 | CCg | --g | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 7 | P7R | cCG | cGA | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp16 | 7 | P7Q | cCg | cAg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 7 | P7H | cCG | cAT | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 7 | P7del1 | ccG | cc- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 7 | P7T | CcG | AcT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp16 | 7 | P7R | cCG | cGA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp16 | 7 | P7A | CcG | GcC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp16 | 7 | P7Q | cCg | cAg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 7 | P7del1 | ccG | cc- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.1.100 | 0.04 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp16 | 7 | P7M | CCg | ATg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp16 | 7 | P7Q | cCg | cAg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 7 | P7A | Ccg | Gcg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.153 | 0.018868 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 7 | P7K | CCG | AAA | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp16 | 7 | P7del2 | CCg | --g | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp16 | 7 | P7Q | cCg | cAg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccC | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp16 | 7 | P7del1 | ccG | cc- | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.36.33 | 0.007576 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp16 | 7 | P7del1 | Ccg | -cg | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp16 | 7 | P7A | Ccg | Gcg | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.515 | 0.014493 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp16 | 7 | P7L | cCg | cTg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.604 | 0.017241 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 7 | P7M | CCg | ATg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp16 | 7 | P7S | Ccg | Tcg | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 7 | P7del | CCG | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccA | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp16 | 7 | P7P | ccG | ccT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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