CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 55

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp16	55	N55N	N6853N	syn	aaC	aaT	9104	9104	1	20821-20823
ORF1ab/nsp16	55	N55S	N6853S	nonsyn	aAc	aGc	219	217	0.990868	20821-20823
ORF1ab/nsp16	55	N55S	N6853S	nonsyn	AAC	TCT	219	1	0.00456621	20821-20823
ORF1ab/nsp16	55	N55S	N6853S	nonsyn	aAC	aGT	219	1	0.00456621	20821-20823
ORF1ab/nsp16	55	N55K	N6853K	nonsyn	aaC	aaA	25	25	1	20821-20823
ORF1ab/nsp16	55	N55del	N6853del	del	AAC	---	16	16	1	20821-20823
ORF1ab/nsp16	55	N55D	N6853D	nonsyn	Aac	Gac	14	13	0.928571	20821-20823
ORF1ab/nsp16	55	N55D	N6853D	nonsyn	AaC	GaT	14	1	0.0714286	20821-20823
ORF1ab/nsp16	55	N55T	N6853T	nonsyn	aAc	aCc	7	7	1	20821-20823
ORF1ab/nsp16	55	N55del2	N6853del2	del	aAC	a--	3	3	1	20821-20823
ORF1ab/nsp16	55	N55I	N6853I	nonsyn	aAc	aTc	3	3	1	20821-20823
ORF1ab/nsp16	55	N55H	N6853H	nonsyn	Aac	Cac	2	2	1	20821-20823
ORF1ab/nsp16	55	N55C	N6853C	nonsyn	AAC	TGT	2	2	1	20821-20823
ORF1ab/nsp16	55	N55G	N6853G	nonsyn	AAc	GGc	2	1	0.5	20821-20823
ORF1ab/nsp16	55	N55G	N6853G	nonsyn	AAC	GGT	2	1	0.5	20821-20823
ORF1ab/nsp16	55	N55Y	N6853Y	nonsyn	Aac	Tac	1	1	1	20821-20823
ORF1ab/nsp16	55	N55del1	N6853del1	del	aaC	aa-	1	1	1	20821-20823

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp16	55	N55N	aaC	aaT	9104	9104	All	0.001741
ORF1ab/nsp16	55	N55N	aaC	aaT	1896	1896	AY.44	0.01154
ORF1ab/nsp16	55	N55N	aaC	aaT	1584	1584	B.1.1.7	0.001418
ORF1ab/nsp16	55	N55N	aaC	aaT	450	450	R.1	0.040504
ORF1ab/nsp16	55	N55N	aaC	aaT	340	340	B.1.1.417	0.918919
ORF1ab/nsp16	55	N55N	aaC	aaT	316	316	B.1.617.2	0.00119
ORF1ab/nsp16	55	N55N	aaC	aaT	308	308	AY.43	0.001365
ORF1ab/nsp16	55	N55N	aaC	aaT	290	290	B.1.634	0.993151
ORF1ab/nsp16	55	N55N	aaC	aaT	274	274	AY.4	0.000426
ORF1ab/nsp16	55	N55N	aaC	aaT	265	265	AY.34	0.025696
ORF1ab/nsp16	55	N55N	aaC	aaT	236	236	B.1.2	0.002078
ORF1ab/nsp16	55	N55S	aAc	aGc	217	219	All	0.000042
ORF1ab/nsp16	55	N55S	aAC	aGT	1	219	All	0
ORF1ab/nsp16	55	N55S	AAC	TCT	1	219	All	0
ORF1ab/nsp16	55	N55N	aaC	aaT	217	217	AY.25	0.001305
ORF1ab/nsp16	55	N55N	aaC	aaT	215	215	AY.47	0.006688
ORF1ab/nsp16	55	N55N	aaC	aaT	210	210	B.1.160	0.006549
ORF1ab/nsp16	55	N55N	aaC	aaT	149	149	B.1.429	0.003506
ORF1ab/nsp16	55	N55N	aaC	aaT	138	138	P.1	0.002174
ORF1ab/nsp16	55	N55N	aaC	aaT	127	127	AY.29	0.002003
ORF1ab/nsp16	55	N55N	aaC	aaT	106	106	B.1.474	0.201521
ORF1ab/nsp16	55	N55N	aaC	aaT	78	78	AY.103	0.000484
ORF1ab/nsp16	55	N55N	aaC	aaT	75	75	B.1	0.000687
ORF1ab/nsp16	55	N55N	aaC	aaT	70	70	AY.3	0.000696
ORF1ab/nsp16	55	N55N	aaC	aaT	70	70	B.1.351	0.002081
ORF1ab/nsp16	55	N55N	aaC	aaT	60	60	AY.4.2	0.001301
ORF1ab/nsp16	55	N55N	aaC	aaT	53	53	C.36.3.1	0.144022
ORF1ab/nsp16	55	N55N	aaC	aaT	50	50	B.1.637	0.003654
ORF1ab/nsp16	55	N55N	aaC	aaT	48	48	AY.118	0.003007
ORF1ab/nsp16	55	N55N	aaC	aaT	47	47	P.1.10	0.012665
ORF1ab/nsp16	55	N55N	aaC	aaT	43	43	AY.121	0.005819
ORF1ab/nsp16	55	N55S	aAc	aGc	43	43	B.1.1.214	0.002385
ORF1ab/nsp16	55	N55N	aaC	aaT	43	43	B.1.177.65	0.028609
ORF1ab/nsp16	55	N55N	aaC	aaT	42	42	AY.5	0.000867
ORF1ab/nsp16	55	N55N	aaC	aaT	39	39	B.1.177	0.000514
ORF1ab/nsp16	55	N55N	aaC	aaT	38	38	AY.20	0.001477
ORF1ab/nsp16	55	N55N	aaC	aaT	37	37	AY.3.1	0.003155
ORF1ab/nsp16	55	N55N	aaC	aaT	37	37	B.1.1	0.000671
ORF1ab/nsp16	55	N55S	aAc	aGc	34	34	B.1.617.2	0.000128
ORF1ab/nsp16	55	N55S	aAc	aGc	29	29	AY.43	0.000128
ORF1ab/nsp16	55	N55N	aaC	aaT	28	28	B.1.427	0.001414
ORF1ab/nsp16	55	N55N	aaC	aaT	26	26	AY.102	0.000689
ORF1ab/nsp16	55	N55K	aaC	aaA	25	25	All	0.000005
ORF1ab/nsp16	55	N55N	aaC	aaT	25	25	AY.39	0.000618
ORF1ab/nsp16	55	N55N	aaC	aaT	25	25	B.1.1.358	0.862069
ORF1ab/nsp16	55	N55N	aaC	aaT	25	25	B.1.1.519	0.000993
ORF1ab/nsp16	55	N55N	aaC	aaT	22	22	AY.76	0.10628
ORF1ab/nsp16	55	N55N	aaC	aaT	22	22	B.1.503	0.054726
ORF1ab/nsp16	55	N55N	aaC	aaT	21	21	B.1.1.37	0.00405
ORF1ab/nsp16	55	N55N	aaC	aaT	21	21	B.1.177.21	0.001606
ORF1ab/nsp16	55	N55N	aaC	aaT	21	21	B.1.604	0.362069
ORF1ab/nsp16	55	N55N	aaC	aaT	20	20	AY.94	0.008853
ORF1ab/nsp16	55	N55N	aaC	aaT	19	19	AY.75	0.001064
ORF1ab/nsp16	55	N55S	aAc	aGc	19	19	B.1.1.7	0.000017
ORF1ab/nsp16	55	N55N	aaC	aaT	19	19	B.1.289	0.050532
ORF1ab/nsp16	55	N55N	aaC	aaT	19	19	B.1.596	0.001656
ORF1ab/nsp16	55	N55N	aaC	aaT	18	18	AY.13	0.002898
ORF1ab/nsp16	55	N55N	aaC	aaT	18	18	AY.9.2	0.000661
ORF1ab/nsp16	55	N55N	aaC	aaT	18	18	B.1.351.2	0.005446
ORF1ab/nsp16	55	N55N	aaC	aaT	18	18	B.1.628	0.006342
ORF1ab/nsp16	55	N55N	aaC	aaT	17	17	AY.74	0.001966
ORF1ab/nsp16	55	N55del	AAC	---	16	16	All	0.000003
ORF1ab/nsp16	55	N55N	aaC	aaT	16	16	B.1.177.4	0.003377
ORF1ab/nsp16	55	N55N	aaC	aaT	16	16	B.1.258	0.001065
ORF1ab/nsp16	55	N55N	aaC	aaT	16	16	B.6.2	1
ORF1ab/nsp16	55	N55N	aaC	aaT	16	16	P.1.14	0.000765
ORF1ab/nsp16	55	N55N	aaC	aaT	15	15	B.1.1.337	0.053957
ORF1ab/nsp16	55	N55N	aaC	aaT	15	15	B.1.526	0.000353
ORF1ab/nsp16	55	N55D	Aac	Gac	13	14	All	0.000002
ORF1ab/nsp16	55	N55D	AaC	GaT	1	14	All	0
ORF1ab/nsp16	55	N55N	aaC	aaT	14	14	AY.33	0.000935
ORF1ab/nsp16	55	N55N	aaC	aaT	14	14	AY.54	0.001335
ORF1ab/nsp16	55	N55S	aAc	aGc	14	14	B.1.177	0.000184
ORF1ab/nsp16	55	N55N	aaC	aaT	13	13	B.1.1.33	0.005471
ORF1ab/nsp16	55	N55N	aaC	aaT	13	13	B.1.349	0.009292
ORF1ab/nsp16	55	N55N	aaC	aaT	13	13	B.1.36.36	0.007827
ORF1ab/nsp16	55	N55N	aaC	aaT	12	12	AY.35	0.002797
ORF1ab/nsp16	55	N55N	aaC	aaT	12	12	AY.42	0.000483
ORF1ab/nsp16	55	N55S	aAc	aGc	12	12	B.1.618	0.048387
ORF1ab/nsp16	55	N55N	aaC	aaT	11	11	AY.99.2	0.001014
ORF1ab/nsp16	55	N55N	aaC	aaT	11	11	B.1.177.79	0.025761
ORF1ab/nsp16	55	N55N	aaC	aaT	10	10	AY.23	0.000697
ORF1ab/nsp16	55	N55S	aAc	aGc	10	10	AY.44	0.000061
ORF1ab/nsp16	55	N55N	aaC	aaT	10	10	B.1.1.244	0.153846
ORF1ab/nsp16	55	N55N	aaC	aaT	10	10	B.1.396	0.007057
ORF1ab/nsp16	55	N55N	aaC	aaT	9	9	AY.45	0.001095
ORF1ab/nsp16	55	N55N	aaC	aaT	9	9	B.1.1.317	0.003705
ORF1ab/nsp16	55	N55N	aaC	aaT	9	9	B.1.1.372	0.006198
ORF1ab/nsp16	55	N55N	aaC	aaT	9	9	B.1.177.60	0.001966
ORF1ab/nsp16	55	N55N	aaC	aaT	9	9	B.1.258.17	0.000936
ORF1ab/nsp16	55	N55N	aaC	aaT	9	9	B.1.36	0.001313
ORF1ab/nsp16	55	N55N	aaC	aaT	9	9	C.37	0.001045
ORF1ab/nsp16	55	N55N	aaC	aaT	8	8	AY.100	0.000368
ORF1ab/nsp16	55	N55N	aaC	aaT	8	8	AY.117	0.000676
ORF1ab/nsp16	55	N55N	aaC	aaT	8	8	AY.119	0.000282
ORF1ab/nsp16	55	N55N	aaC	aaT	8	8	AY.46.3	0.00747
ORF1ab/nsp16	55	N55N	aaC	aaT	8	8	B.1.1.284	0.000859
ORF1ab/nsp16	55	N55N	aaC	aaT	8	8	B.1.621	0.000708
ORF1ab/nsp16	55	N55N	aaC	aaT	8	8	B.1.69	0.285714
ORF1ab/nsp16	55	N55S	aAc	aGc	8	8	P.1	0.000126
ORF1ab/nsp16	55	N55N	aaC	aaT	8	8	P.2	0.001493
ORF1ab/nsp16	55	N55N	aaC	aaT	8	8	Q.1	0.001011
ORF1ab/nsp16	55	N55T	aAc	aCc	7	7	All	0.000001
ORF1ab/nsp16	55	N55S	aAc	aGc	7	7	AY.4	0.000011
ORF1ab/nsp16	55	N55N	aaC	aaT	7	7	AY.46.6	0.000505
ORF1ab/nsp16	55	N55N	aaC	aaT	7	7	AY.9	0.000473
ORF1ab/nsp16	55	N55N	aaC	aaT	7	7	AY.98.1	0.000339
ORF1ab/nsp16	55	N55N	aaC	aaT	7	7	B.1.265	0.008895
ORF1ab/nsp16	55	N55N	aaC	aaT	7	7	B.1.525	0.000792
ORF1ab/nsp16	55	N55N	aaC	aaT	7	7	B.1.617.1	0.000903
ORF1ab/nsp16	55	N55N	aaC	aaT	7	7	D.2	0.000525
ORF1ab/nsp16	55	N55N	aaC	aaT	6	6	B.1.36.29	0.003104
ORF1ab/nsp16	55	N55N	aaC	aaT	6	6	B.1.588	0.00546
ORF1ab/nsp16	55	N55N	aaC	aaT	5	5	AY.11	0.006693
ORF1ab/nsp16	55	N55N	aaC	aaT	5	5	AY.26	0.000142
ORF1ab/nsp16	55	N55N	aaC	aaT	5	5	AY.27	0.000324
ORF1ab/nsp16	55	N55N	aaC	aaT	5	5	AY.61	0.000524
ORF1ab/nsp16	55	N55N	aaC	aaT	5	5	AY.62	0.002179
ORF1ab/nsp16	55	N55N	aaC	aaT	5	5	B.1.1.214	0.000277
ORF1ab/nsp16	55	N55N	aaC	aaT	5	5	B.1.1.277	0.003794
ORF1ab/nsp16	55	N55N	aaC	aaT	5	5	B.1.1.39	0.002548
ORF1ab/nsp16	55	N55N	aaC	aaT	5	5	B.1.221	0.000355
ORF1ab/nsp16	55	N55N	aaC	aaT	5	5	B.1.243	0.000348
ORF1ab/nsp16	55	N55N	aaC	aaT	5	5	C.16	0.005302
ORF1ab/nsp16	55	N55K	aaC	aaA	4	4	AY.102	0.000106
ORF1ab/nsp16	55	N55S	aAc	aGc	4	4	AY.102	0.000106
ORF1ab/nsp16	55	N55N	aaC	aaT	4	4	AY.106	0.00134
ORF1ab/nsp16	55	N55S	aAc	aGc	4	4	AY.114	0.000924
ORF1ab/nsp16	55	N55N	aaC	aaT	4	4	AY.15	0.008889
ORF1ab/nsp16	55	N55N	aaC	aaT	4	4	AY.39.1	0.000158
ORF1ab/nsp16	55	N55N	aaC	aaT	4	4	AY.46	0.000416
ORF1ab/nsp16	55	N55N	aaC	aaT	4	4	AY.75.1	0.000721
ORF1ab/nsp16	55	N55N	aaC	aaT	4	4	B.1.1.207	0.004728
ORF1ab/nsp16	55	N55del	AAC	---	4	4	B.1.1.7	0.000004
ORF1ab/nsp16	55	N55K	aaC	aaA	4	4	B.1.1.7	0.000004
ORF1ab/nsp16	55	N55N	aaC	aaT	4	4	B.1.258.4	0.013793
ORF1ab/nsp16	55	N55N	aaC	aaT	4	4	B.1.369	0.001141
ORF1ab/nsp16	55	N55N	aaC	aaT	4	4	B.1.375	0.003279
ORF1ab/nsp16	55	N55N	aaC	aaT	4	4	B.1.425	0.011976
ORF1ab/nsp16	55	N55N	aaC	aaT	4	4	B.40	0.001457
ORF1ab/nsp16	55	N55I	aAc	aTc	3	3	All	0.000001
ORF1ab/nsp16	55	N55del2	aAC	a--	3	3	All	0.000001
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	AY.108	0.003308
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	AY.24	0.001293
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	AY.29.1	0.000662
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	AY.4.5	0.000322
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	AY.85	0.001282
ORF1ab/nsp16	55	N55S	aAc	aGc	3	3	B.1	0.000027
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	B.1.1.222	0.000612
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	B.1.1.70	0.001023
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	B.1.177.69	0.004451
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	B.1.214.2	0.001799
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	B.1.234	0.000396
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	B.1.243.1	0.066667
ORF1ab/nsp16	55	N55S	aAc	aGc	3	3	B.1.36	0.000438
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	B.1.411	0.011111
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	B.1.564	0.001278
ORF1ab/nsp16	55	N55K	aaC	aaA	3	3	B.1.617.2	0.000011
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	P.1.7	0.000958
ORF1ab/nsp16	55	N55N	aaC	aaT	3	3	Q.3	0.000435
ORF1ab/nsp16	55	N55C	AAC	TGT	2	2		0.111111
ORF1ab/nsp16	55	N55D	AaC	GaT	1	2		0.055556
ORF1ab/nsp16	55	N55G	AAC	GGT	1	2		0.055556
ORF1ab/nsp16	55	N55S	aAc	aGc	1	2		0.055556
ORF1ab/nsp16	55	N55G	AAc	GGc	1	2		0.055556
ORF1ab/nsp16	55	N55S	aAC	aGT	1	2		0.055556
ORF1ab/nsp16	55	N55D	Aac	Gac	1	2		0.055556
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	A	0.000774
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	A.1	0.000564
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	A.2.5	0.000998
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AE.8	0.000978
ORF1ab/nsp16	55	N55H	Aac	Cac	2	2	All	0
ORF1ab/nsp16	55	N55C	AAC	TGT	2	2	All	0
ORF1ab/nsp16	55	N55G	AAc	GGc	1	2	All	0
ORF1ab/nsp16	55	N55G	AAC	GGT	1	2	All	0
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AU.2	0.004843
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.1	0.000791
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.111	0.000366
ORF1ab/nsp16	55	N55D	Aac	Gac	2	2	AY.113	0.000285
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.12	0.000632
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.14	0.000176
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.16	0.000759
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.23.1	0.000835
ORF1ab/nsp16	55	N55K	aaC	aaA	2	2	AY.25	0.000012
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.4.1	0.001475
ORF1ab/nsp16	55	N55del	AAC	---	2	2	AY.4.5	0.000215
ORF1ab/nsp16	55	N55K	aaC	aaA	2	2	AY.44	0.000012
ORF1ab/nsp16	55	N55D	Aac	Gac	2	2	AY.44	0.000012
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.46.4	0.000329
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.46.5	0.000397
ORF1ab/nsp16	55	N55S	aAc	aGc	2	2	AY.49	0.00639
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.59	0.001059
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.6	0.000082
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.7.1	0.000225
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	AY.98	0.000158
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B	0.000256
ORF1ab/nsp16	55	N55del	AAC	---	2	2	B.1	0.000018
ORF1ab/nsp16	55	N55K	aaC	aaA	2	2	B.1	0.000018
ORF1ab/nsp16	55	N55del2	aAC	a--	2	2	B.1	0.000018
ORF1ab/nsp16	55	N55S	aAc	aGc	1	2	B.1.1	0.000018
ORF1ab/nsp16	55	N55S	AAC	TCT	1	2	B.1.1	0.000018
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.1.216	0.001781
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.1.220	0.003717
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.1.335	0.025974
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.1.434	0.000697
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.1.464	0.002946
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.1.486	0.003155
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.177.86	0.000367
ORF1ab/nsp16	55	N55S	aAc	aGc	2	2	B.1.2	0.000018
ORF1ab/nsp16	55	N55S	aAc	aGc	2	2	B.1.258.14	0.001961
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.298	0.004228
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.340	0.008584
ORF1ab/nsp16	55	N55S	aAc	aGc	2	2	B.1.351	0.000059
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.36.8	0.002
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.400	0.000858
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.404	0.002604
ORF1ab/nsp16	55	N55K	aaC	aaA	2	2	B.1.429	0.000047
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	B.1.625	0.004706
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	C.36	0.001821
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	C.36.3	0.001134
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	C.37.1	0.005236
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	P.1.15	0.000465
ORF1ab/nsp16	55	N55N	aaC	aaT	2	2	P.1.2	0.002312
ORF1ab/nsp16	55	N55K	aaC	aaA	1	1		0.055556
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1		0.055556
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	A.19	0.009434
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	A.2.2	0.001689
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	A.27	0.001656
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AD.2	0.000219
ORF1ab/nsp16	55	N55Y	Aac	Tac	1	1	All	0
ORF1ab/nsp16	55	N55del1	aaC	aa-	1	1	All	0
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	AY.103	0.000006
ORF1ab/nsp16	55	N55K	aaC	aaA	1	1	AY.103	0.000006
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.109	0.00074
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.113	0.000142
ORF1ab/nsp16	55	N55T	aAc	aCc	1	1	AY.114	0.000231
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.116.1	0.000311
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	AY.117	0.000085
ORF1ab/nsp16	55	N55K	aaC	aaA	1	1	AY.118	0.000063
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.120	0.000037
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	AY.120.1	0.000321
ORF1ab/nsp16	55	N55T	aAc	aCc	1	1	AY.121	0.000135
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.16.1	0.00047
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.19	0.00114
ORF1ab/nsp16	55	N55del	AAC	---	1	1	AY.25	0.000006
ORF1ab/nsp16	55	N55D	Aac	Gac	1	1	AY.26	0.000028
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.30	0.000396
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	AY.39	0.000025
ORF1ab/nsp16	55	N55T	aAc	aCc	1	1	AY.4	0.000002
ORF1ab/nsp16	55	N55K	aaC	aaA	1	1	AY.4	0.000002
ORF1ab/nsp16	55	N55D	Aac	Gac	1	1	AY.4.2	0.000022
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	AY.4.2	0.000022
ORF1ab/nsp16	55	N55H	Aac	Cac	1	1	AY.4.2	0.000022
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.4.2.1	0.000149
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.4.3	0.000842
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.41	0.000294
ORF1ab/nsp16	55	N55D	Aac	Gac	1	1	AY.43	0.000004
ORF1ab/nsp16	55	N55I	aAc	aTc	1	1	AY.43	0.000004
ORF1ab/nsp16	55	N55I	aAc	aTc	1	1	AY.44	0.000006
ORF1ab/nsp16	55	N55del2	aAC	a--	1	1	AY.44	0.000006
ORF1ab/nsp16	55	N55K	aaC	aaA	1	1	AY.45	0.000122
ORF1ab/nsp16	55	N55T	aAc	aCc	1	1	AY.45	0.000122
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.46.1	0.001027
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.46.2	0.000635
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.5.3	0.000337
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.50	0.000799
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.55	0.000917
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.57	0.000656
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.60	0.000938
ORF1ab/nsp16	55	N55del1	aaC	aa-	1	1	AY.61	0.000105
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.69	0.000187
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	AY.7	0.000196
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.70	0.000209
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.71	0.000475
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.73	0.000665
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.79	0.001211
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.83	0.001724
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.84	0.000437
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.87	0.000833
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.89	0.004902
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.9.1	0.000084
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.91	0.00073
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AY.96	0.002075
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	AZ.2	0.000821
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.1	0.000327
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.198	0.001468
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.209	0.008929
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.219	0.005
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.226	0.005814
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.232	0.001815
ORF1ab/nsp16	55	N55del	AAC	---	1	1	B.1.1.236	0.006897
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.274	0.005051
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.28	0.000311
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.280	0.003086
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	B.1.1.288	0.001916
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.294	0.001266
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.306	0.000438
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	B.1.1.317	0.000412
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.348	0.000796
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.355	0.015385
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.371	0.010417
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	B.1.1.377	0.001381
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.409	0.002833
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.416	0.000905
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.420	0.001006
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.433	0.001425
ORF1ab/nsp16	55	N55D	Aac	Gac	1	1	B.1.1.519	0.00004
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	B.1.1.519	0.00004
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.1.54	0.003021
ORF1ab/nsp16	55	N55T	aAc	aCc	1	1	B.1.1.7	0.000001
ORF1ab/nsp16	55	N55D	Aac	Gac	1	1	B.1.1.7	0.000001
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.157	0.002985
ORF1ab/nsp16	55	N55H	Aac	Cac	1	1	B.1.177	0.000013
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.177.16	0.000664
ORF1ab/nsp16	55	N55del	AAC	---	1	1	B.1.177.17	0.000821
ORF1ab/nsp16	55	N55del	AAC	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.177.18	0.00116
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.177.44	0.000519
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.177.47	0.012987
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.177.52	0.001757
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	B.1.177.6	0.000977
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.177.7	0.000165
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.177.73	0.000566
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.177.85	0.005435
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.177.87	0.000728
ORF1ab/nsp16	55	N55D	Aac	Gac	1	1	B.1.192	0.009259
ORF1ab/nsp16	55	N55I	aAc	aTc	1	1	B.1.2	0.000009
ORF1ab/nsp16	55	N55D	Aac	Gac	1	1	B.1.2	0.000009
ORF1ab/nsp16	55	N55K	aaC	aaA	1	1	B.1.2	0.000009
ORF1ab/nsp16	55	N55T	aAc	aCc	1	1	B.1.2	0.000009
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.210	0.002132
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	B.1.218	0.005155
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.236	0.002053
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.240	0.000216
ORF1ab/nsp16	55	N55D	Aac	Gac	1	1	B.1.240	0.000216
ORF1ab/nsp16	55	N55del	AAC	---	1	1	B.1.258	0.000067
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.258.11	0.000396
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.258.3	0.001675
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.3	0.002618
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.302	0.013333
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.311	0.000275
ORF1ab/nsp16	55	N55T	aAc	aCc	1	1	B.1.351	0.00003
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.361	0.001289
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.367	0.000792
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.38	0.032258
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.398	0.002976
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.399	0.001934
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.415	0.014286
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.428	0.00102
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	B.1.429	0.000024
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.445	0.011765
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.448	0.002625
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.468	0.005714
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.500	0.052632
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.524	0.001406
ORF1ab/nsp16	55	N55del	AAC	---	1	1	B.1.525	0.000113
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.561	0.000397
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.575	0.000303
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.582	0.000491
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	B.1.595	0.000261
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.595	0.000261
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.619	0.000871
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.1.620	0.000946
ORF1ab/nsp16	55	N55del	AAC	---	1	1	B.1.620	0.000946
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	B.1.621	0.000089
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.52	0.010101
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	B.55	0.00295
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	C.1	0.002392
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	C.18	0.002591
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	C.35	0.000774
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	C.37	0.000116
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	L.1	0.001905
ORF1ab/nsp16	55	N55S	aAc	aGc	1	1	P.1.1	0.000318
ORF1ab/nsp16	55	N55Y	Aac	Tac	1	1	P.1.1	0.000318
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	P.1.12	0.000484
ORF1ab/nsp16	55	N55del	AAC	---	1	1	P.1.15	0.000232
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	P.1.16	0.000374
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	P.1.6	0.001946
ORF1ab/nsp16	55	N55N	aaC	aaT	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.