CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 47

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1647Y47YY6845YsyntaTtaC21902190120797-20799
ORF1ab/nsp1647Y47DY6845DnonsynTatGat53510.96226420797-20799
ORF1ab/nsp1647Y47DY6845DnonsynTaTGaC5320.037735820797-20799
ORF1ab/nsp1647Y47NY6845NnonsynTatAat2121120797-20799
ORF1ab/nsp1647Y47delY6845deldelTAT---1717120797-20799
ORF1ab/nsp1647Y47del1Y6845del1delTat-at1717120797-20799
ORF1ab/nsp1647Y47HY6845HnonsynTatCat980.88888920797-20799
ORF1ab/nsp1647Y47HY6845HnonsynTaTCaC910.11111120797-20799
ORF1ab/nsp1647Y47FY6845FnonsyntAttTt66120797-20799
ORF1ab/nsp1647Y47CY6845CnonsyntAttGt540.820797-20799
ORF1ab/nsp1647Y47CY6845CnonsyntATtGC510.220797-20799
ORF1ab/nsp1647Y47XY6845XnonsyntaTtaA320.66666720797-20799
ORF1ab/nsp1647Y47XY6845XnonsyntaTtaG310.33333320797-20799
ORF1ab/nsp1647Y47KY6845KnonsynTaTAaA210.520797-20799
ORF1ab/nsp1647Y47KY6845KnonsynTaTAaG210.520797-20799
ORF1ab/nsp1647Y47GY6845GnonsynTAtGGt210.520797-20799
ORF1ab/nsp1647Y47GY6845GnonsynTATGGC210.520797-20799
ORF1ab/nsp1647Y47RY6845RnonsynTAtCGt210.520797-20799
ORF1ab/nsp1647Y47RY6845RnonsynTATCGC210.520797-20799

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1647Y47YtaTtaC21902190All0.000419
ORF1ab/nsp1647Y47YtaTtaC573573B.1.258.30.959799
ORF1ab/nsp1647Y47YtaTtaC518518B.1.2580.034471
ORF1ab/nsp1647Y47YtaTtaC222222B.1.258.21
ORF1ab/nsp1647Y47YtaTtaC110110B.1.20.000969
ORF1ab/nsp1647Y47YtaTtaC9494B.1.617.20.000354
ORF1ab/nsp1647Y47YtaTtaC7373AY.980.005767
ORF1ab/nsp1647Y47YtaTtaC6060B.1.1.70.000054
ORF1ab/nsp1647Y47DTatGat5153All0.00001
ORF1ab/nsp1647Y47DTaTGaC253All0
ORF1ab/nsp1647Y47YtaTtaC3737B.1.258.240.397849
ORF1ab/nsp1647Y47YtaTtaC3535AY.40.000054
ORF1ab/nsp1647Y47YtaTtaC3333AY.440.000201
ORF1ab/nsp1647Y47YtaTtaC2929B.1.1.3840.690476
ORF1ab/nsp1647Y47YtaTtaC2424AY.46.60.001733
ORF1ab/nsp1647Y47YtaTtaC2424G.11
ORF1ab/nsp1647Y47YtaTtaC2323AY.360.003409
ORF1ab/nsp1647Y47NTatAat2121All0.000004
ORF1ab/nsp1647Y47YtaTtaC2020B.10.000183
ORF1ab/nsp1647Y47YtaTtaC1919AY.1030.000118
ORF1ab/nsp1647Y47DTatGat1919AY.430.000084
ORF1ab/nsp1647Y47delTAT---1717All0.000003
ORF1ab/nsp1647Y47del1Tat-at1717All0.000003
ORF1ab/nsp1647Y47YtaTtaC1515B.1.1770.000198
ORF1ab/nsp1647Y47YtaTtaC1414AY.30.000139
ORF1ab/nsp1647Y47YtaTtaC1414B.1.10.000254
ORF1ab/nsp1647Y47YtaTtaC1313P.1.140.000621
ORF1ab/nsp1647Y47YtaTtaC1212AY.430.000053
ORF1ab/nsp1647Y47YtaTtaC1212B.1.177.210.000918
ORF1ab/nsp1647Y47HTatCat89All0.000002
ORF1ab/nsp1647Y47HTaTCaC19All0
ORF1ab/nsp1647Y47YtaTtaC99AY.250.000054
ORF1ab/nsp1647Y47YtaTtaC99B.1.4290.000212
ORF1ab/nsp1647Y47YtaTtaC88B.1.3690.002282
ORF1ab/nsp1647Y47YtaTtaC77AY.1080.007718
ORF1ab/nsp1647Y47YtaTtaC77AY.290.00011
ORF1ab/nsp1647Y47DTatGat77AY.30.00007
ORF1ab/nsp1647Y47YtaTtaC77AY.99.20.000645
ORF1ab/nsp1647Y47YtaTtaC77B.1.617.10.000903
ORF1ab/nsp1647Y47FtAttTt66All0.000001
ORF1ab/nsp1647Y47YtaTtaC66AY.1200.000223
ORF1ab/nsp1647Y47YtaTtaC66AY.230.000418
ORF1ab/nsp1647Y47YtaTtaC66AY.260.00017
ORF1ab/nsp1647Y47YtaTtaC66B.1.1.4200.006036
ORF1ab/nsp1647Y47CtAttGt45All0.000001
ORF1ab/nsp1647Y47CtATtGC15All0
ORF1ab/nsp1647Y47YtaTtaC55AY.200.000194
ORF1ab/nsp1647Y47YtaTtaC55AY.750.00028
ORF1ab/nsp1647Y47YtaTtaC55B.1.1600.000156
ORF1ab/nsp1647Y47YtaTtaC55B.1.3510.000149
ORF1ab/nsp1647Y47YtaTtaC55B.1.5260.000118
ORF1ab/nsp1647Y47del1Tat-at44AY.1100.000451
ORF1ab/nsp1647Y47YtaTtaC44AY.4.20.000087
ORF1ab/nsp1647Y47del1Tat-at44AY.430.000018
ORF1ab/nsp1647Y47YtaTtaC44B.1.1.1740.013514
ORF1ab/nsp1647Y47YtaTtaC44B.1.1.3480.003185
ORF1ab/nsp1647Y47delTAT---44B.1.1.70.000004
ORF1ab/nsp1647Y47DTatGat44B.1.617.20.000015
ORF1ab/nsp1647Y47XtaTtaA23All0
ORF1ab/nsp1647Y47XtaTtaG13All0
ORF1ab/nsp1647Y47YtaTtaC33AY.1020.00008
ORF1ab/nsp1647Y47YtaTtaC33AY.1190.000106
ORF1ab/nsp1647Y47YtaTtaC33AY.330.0002
ORF1ab/nsp1647Y47del1Tat-at33AY.40.000005
ORF1ab/nsp1647Y47DTatGat33AY.420.000121
ORF1ab/nsp1647Y47NTatAat33AY.440.000018
ORF1ab/nsp1647Y47YtaTtaC33AY.450.000365
ORF1ab/nsp1647Y47DTatGat33AY.46.60.000217
ORF1ab/nsp1647Y47YtaTtaC33AY.570.001969
ORF1ab/nsp1647Y47YtaTtaC33AY.9.20.00011
ORF1ab/nsp1647Y47HTatCat33B.1.1.70.000003
ORF1ab/nsp1647Y47YtaTtaC33B.1.1.830.00813
ORF1ab/nsp1647Y47YtaTtaC33B.1.4700.004213
ORF1ab/nsp1647Y47YtaTtaC33B.1.5680.003333
ORF1ab/nsp1647Y47YtaTtaC33B.1.6370.000219
ORF1ab/nsp1647Y47XtaTtaA220.111111
ORF1ab/nsp1647Y47delTAT---220.111111
ORF1ab/nsp1647Y47RTATCGC120.055556
ORF1ab/nsp1647Y47RTAtCGt120.055556
ORF1ab/nsp1647Y47GTATGGC120.055556
ORF1ab/nsp1647Y47GTAtGGt120.055556
ORF1ab/nsp1647Y47CtATtGC120.055556
ORF1ab/nsp1647Y47HTatCat120.055556
ORF1ab/nsp1647Y47CtAttGt120.055556
ORF1ab/nsp1647Y47DTaTGaC120.055556
ORF1ab/nsp1647Y47DTatGat120.055556
ORF1ab/nsp1647Y47HTaTCaC120.055556
ORF1ab/nsp1647Y47RTAtCGt12All0
ORF1ab/nsp1647Y47KTaTAaA12All0
ORF1ab/nsp1647Y47KTaTAaG12All0
ORF1ab/nsp1647Y47GTATGGC12All0
ORF1ab/nsp1647Y47GTAtGGt12All0
ORF1ab/nsp1647Y47RTATCGC12All0
ORF1ab/nsp1647Y47DTatGat22AY.1020.000053
ORF1ab/nsp1647Y47NTatAat22AY.250.000012
ORF1ab/nsp1647Y47YtaTtaC22AY.390.000049
ORF1ab/nsp1647Y47YtaTtaC22AY.4.2.10.000298
ORF1ab/nsp1647Y47delTAT---22AY.4.50.000215
ORF1ab/nsp1647Y47YtaTtaC22AY.850.000854
ORF1ab/nsp1647Y47YtaTtaC22AY.930.000546
ORF1ab/nsp1647Y47YtaTtaC22AY.98.10.000097
ORF1ab/nsp1647Y47NTatAat22B.10.000018
ORF1ab/nsp1647Y47DTatGat22B.10.000018
ORF1ab/nsp1647Y47YtaTtaC22B.1.1.3170.000823
ORF1ab/nsp1647Y47YtaTtaC22B.1.1.3540.008772
ORF1ab/nsp1647Y47NTatAat22B.1.1.70.000002
ORF1ab/nsp1647Y47YtaTtaC22B.1.177.830.002963
ORF1ab/nsp1647Y47YtaTtaC22B.1.2210.000142
ORF1ab/nsp1647Y47YtaTtaC22B.1.4000.000858
ORF1ab/nsp1647Y47YtaTtaC22B.1.4780.023529
ORF1ab/nsp1647Y47YtaTtaC22B.1.6290.026667
ORF1ab/nsp1647Y47YtaTtaC22D.20.00015
ORF1ab/nsp1647Y47YtaTtaC110.055556
ORF1ab/nsp1647Y47NTatAat110.055556
ORF1ab/nsp1647Y47KTaTAaA110.055556
ORF1ab/nsp1647Y47YtaTtaC11A0.000387
ORF1ab/nsp1647Y47YtaTtaC11A.2.50.000499
ORF1ab/nsp1647Y47YtaTtaC11AA.20.007692
ORF1ab/nsp1647Y47YtaTtaC11AU.30.00211
ORF1ab/nsp1647Y47DTatGat11AY.1030.000006
ORF1ab/nsp1647Y47DTatGat11AY.1100.000113
ORF1ab/nsp1647Y47DTatGat11AY.1130.000142
ORF1ab/nsp1647Y47YtaTtaC11AY.1180.000063
ORF1ab/nsp1647Y47HTatCat11AY.230.00007
ORF1ab/nsp1647Y47delTAT---11AY.250.000006
ORF1ab/nsp1647Y47del1Tat-at11AY.30.00001
ORF1ab/nsp1647Y47NTatAat11AY.30.00001
ORF1ab/nsp1647Y47YtaTtaC11AY.3.10.000085
ORF1ab/nsp1647Y47DTatGat11AY.330.000067
ORF1ab/nsp1647Y47YtaTtaC11AY.380.000499
ORF1ab/nsp1647Y47delTAT---11AY.40.000002
ORF1ab/nsp1647Y47HTatCat11AY.40.000002
ORF1ab/nsp1647Y47DTatGat11AY.40.000002
ORF1ab/nsp1647Y47YtaTtaC11AY.420.00004
ORF1ab/nsp1647Y47NTatAat11AY.430.000004
ORF1ab/nsp1647Y47YtaTtaC11AY.460.000104
ORF1ab/nsp1647Y47del1Tat-at11AY.46.60.000072
ORF1ab/nsp1647Y47YtaTtaC11AY.470.000031
ORF1ab/nsp1647Y47del1Tat-at11AY.470.000031
ORF1ab/nsp1647Y47del1Tat-at11AY.580.000907
ORF1ab/nsp1647Y47YtaTtaC11AY.60.000041
ORF1ab/nsp1647Y47DTatGat11AY.670.000464
ORF1ab/nsp1647Y47YtaTtaC11AY.680.000274
ORF1ab/nsp1647Y47YtaTtaC11AY.780.001541
ORF1ab/nsp1647Y47DTatGat11AY.840.000437
ORF1ab/nsp1647Y47YtaTtaC11AY.880.000884
ORF1ab/nsp1647Y47YtaTtaC11AY.9.10.000084
ORF1ab/nsp1647Y47DTatGat11AY.9.20.000037
ORF1ab/nsp1647Y47YtaTtaC11AY.960.002075
ORF1ab/nsp1647Y47DTatGat11AY.990.001049
ORF1ab/nsp1647Y47CtAttGt11B0.000128
ORF1ab/nsp1647Y47HTatCat11B.10.000009
ORF1ab/nsp1647Y47CtAttGt11B.10.000009
ORF1ab/nsp1647Y47FtAttTt11B.10.000009
ORF1ab/nsp1647Y47delTAT---11B.10.000009
ORF1ab/nsp1647Y47HTatCat11B.1.10.000018
ORF1ab/nsp1647Y47FtAttTt11B.1.1.10.000327
ORF1ab/nsp1647Y47delTAT---11B.1.1.2360.006897
ORF1ab/nsp1647Y47YtaTtaC11B.1.1.2430.004082
ORF1ab/nsp1647Y47YtaTtaC11B.1.1.3120.001912
ORF1ab/nsp1647Y47NTatAat11B.1.1.4090.002833
ORF1ab/nsp1647Y47YtaTtaC11B.1.1.4340.000349
ORF1ab/nsp1647Y47NTatAat11B.1.1.5260.003546
ORF1ab/nsp1647Y47del1Tat-at11B.1.1.70.000001
ORF1ab/nsp1647Y47KTaTAaG11B.1.1180.006711
ORF1ab/nsp1647Y47NTatAat11B.1.177.170.000821
ORF1ab/nsp1647Y47delTAT---11B.1.177.170.000821
ORF1ab/nsp1647Y47DTatGat11B.1.177.210.000076
ORF1ab/nsp1647Y47YtaTtaC11B.1.177.570.000281
ORF1ab/nsp1647Y47YtaTtaC11B.1.177.60.000977
ORF1ab/nsp1647Y47delTAT---11B.1.177.730.000566
ORF1ab/nsp1647Y47YtaTtaC11B.1.177.730.000566
ORF1ab/nsp1647Y47del1Tat-at11B.1.20.000009
ORF1ab/nsp1647Y47NTatAat11B.1.20.000009
ORF1ab/nsp1647Y47NTatAat11B.1.2100.002132
ORF1ab/nsp1647Y47YtaTtaC11B.1.214.20.0006
ORF1ab/nsp1647Y47NTatAat11B.1.2210.000071
ORF1ab/nsp1647Y47YtaTtaC11B.1.2230.002778
ORF1ab/nsp1647Y47YtaTtaC11B.1.2340.000132
ORF1ab/nsp1647Y47YtaTtaC11B.1.2430.00007
ORF1ab/nsp1647Y47delTAT---11B.1.2580.000067
ORF1ab/nsp1647Y47YtaTtaC11B.1.258.170.000104
ORF1ab/nsp1647Y47XtaTtaG11B.1.3320.003497
ORF1ab/nsp1647Y47YtaTtaC11B.1.36.80.001
ORF1ab/nsp1647Y47YtaTtaC11B.1.390.003906
ORF1ab/nsp1647Y47YtaTtaC11B.1.3990.001934
ORF1ab/nsp1647Y47FtAttTt11B.1.4290.000024
ORF1ab/nsp1647Y47NTatAat11B.1.4290.000024
ORF1ab/nsp1647Y47FtAttTt11B.1.4520.013699
ORF1ab/nsp1647Y47FtAttTt11B.1.4910.052632
ORF1ab/nsp1647Y47YtaTtaC11B.1.5090.000866
ORF1ab/nsp1647Y47DTaTGaC11B.1.5250.000113
ORF1ab/nsp1647Y47CtAttGt11B.1.5260.000024
ORF1ab/nsp1647Y47YtaTtaC11B.1.5950.000261
ORF1ab/nsp1647Y47YtaTtaC11B.1.5960.000087
ORF1ab/nsp1647Y47YtaTtaC11B.1.5990.00365
ORF1ab/nsp1647Y47YtaTtaC11B.1.6190.000871
ORF1ab/nsp1647Y47delTAT---11B.1.6200.000946
ORF1ab/nsp1647Y47YtaTtaC11B.1.6200.000946
ORF1ab/nsp1647Y47YtaTtaC11B.1.6210.000089
ORF1ab/nsp1647Y47YtaTtaC11B.1.6280.000352
ORF1ab/nsp1647Y47NTatAat11B.280.003279
ORF1ab/nsp1647Y47YtaTtaC11B.40.002208
ORF1ab/nsp1647Y47NTatAat11B.400.000364
ORF1ab/nsp1647Y47YtaTtaC11B.550.00295
ORF1ab/nsp1647Y47YtaTtaC11B.60.00091
ORF1ab/nsp1647Y47YtaTtaC11C.160.00106
ORF1ab/nsp1647Y47delTAT---11P.1.150.000232
ORF1ab/nsp1647Y47YtaTtaC11P.1.170.000162
ORF1ab/nsp1647Y47YtaTtaC11Q.20.000613
ORF1ab/nsp1647Y47FtAttTt11Q.30.000145