CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 35 | T35I | T6833I | nonsyn | aCa | aTa | 13269 | 13265 | 0.999699 | 20761-20763 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 13265 | 13269 | All | 0.002537 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2023 | 2023 | B.1.1.7 | 0.001811 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1286 | 1286 | AY.120 | 0.047812 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1064 | 1064 | B.1.1.416 | 0.962896 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 722 | 722 | B.1.346 | 0.946265 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 686 | 686 | AY.43 | 0.003039 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 658 | 658 | AY.39 | 0.01626 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 602 | 602 | AY.4 | 0.000937 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 560 | 560 | B.1 | 0.005129 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 418 | 418 | B.1.617.2 | 0.001574 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 380 | 380 | AY.6 | 0.015629 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 377 | 378 | AY.3 | 0.00375 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 368 | 368 | B.1.2 | 0.00324 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 246 | 246 | P.2 | 0.045913 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 224 | 224 | AY.42 | 0.009012 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 209 | 209 | B.1.637 | 0.015272 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 173 | 174 | AY.44 | 0.001053 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 171 | 171 | AY.25 | 0.001029 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 162 | 162 | AY.103 | 0.001006 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 125 | 125 | B.1.1 | 0.002268 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 122 | 122 | AY.20 | 0.004742 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 120 | 120 | AY.102 | 0.003182 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 98 | 98 | P.1.15 | 0.02277 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 95 | 95 | B.1.36 | 0.013861 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 92 | 92 | AY.92 | 0.026429 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 91 | 91 | P.1 | 0.001434 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 81 | 81 | P.1.14 | 0.003872 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 71 | 71 | B.1.177 | 0.000935 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 69 | 69 | AY.23 | 0.004813 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 64 | 64 | AY.33 | 0.004274 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 64 | 64 | AY.46 | 0.006661 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 61 | 61 | B.1.628 | 0.021494 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 59 | 59 | B.1.258.20 | 0.936508 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 57 | 57 | B.1.1.318 | 0.0172 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 54 | 54 | AY.29 | 0.000852 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 53 | 53 | AY.4.2 | 0.00115 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 46 | 46 | B.1.526 | 0.001081 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 41 | 41 | B.1.160 | 0.001279 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 40 | 40 | AY.37 | 0.012642 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 40 | 40 | B.1.429 | 0.000941 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 39 | 39 | AY.117 | 0.003296 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 38 | 38 | AY.5 | 0.000785 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 37 | 37 | AY.39.1 | 0.001466 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 36 | 36 | AY.84 | 0.015748 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 29 | 29 | B.1.221 | 0.00206 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 28 | 28 | B.1.1.420 | 0.028169 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 25 | 25 | AY.46.6 | 0.001805 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 25 | 25 | B.1.1.519 | 0.000993 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 25 | 25 | B.1.551 | 0.032258 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 24 | 24 | B.1.619.1 | 0.015394 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 23 | 23 | B.1.177.44 | 0.011936 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 23 | 23 | B.1.351.2 | 0.006959 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 23 | 23 | C.27 | 0.425926 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 22 | 22 | AY.99.2 | 0.002027 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 22 | 22 | B.1.1.265 | 0.069401 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 22 | 22 | C.37 | 0.002553 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 20 | 20 | B.1.523 | 0.04902 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 18 | 18 | B.1.177.81 | 0.003408 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 18 | 18 | B.1.215 | 0.173077 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 17 | 17 | AY.26 | 0.000481 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 17 | 17 | AY.47 | 0.000529 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 16 | 16 | B.1.258 | 0.001065 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 16 | 16 | B.1.351 | 0.000476 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 16 | 16 | R.1 | 0.00144 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 15 | 15 | AY.100 | 0.00069 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 15 | 15 | AY.104 | 0.029762 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 15 | 15 | AY.30 | 0.005936 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 15 | 15 | AY.36 | 0.002223 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 15 | 15 | B.1.1.25 | 0.008528 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 15 | 15 | B.1.466.2 | 0.005869 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 15 | 15 | B.1.596 | 0.001307 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 14 | 14 | AY.77 | 0.015784 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 14 | 14 | P.1.7 | 0.00447 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 13 | 13 | AY.59 | 0.006886 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 13 | 13 | AY.61 | 0.001362 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 12 | 13 | B.1.525 | 0.001358 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 10 | 10 | AY.105 | 0.006431 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 9 | 9 | AY.110 | 0.001014 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 9 | 9 | AY.32 | 0.004792 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 9 | 9 | AY.34 | 0.000873 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 9 | 9 | AY.91 | 0.006574 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 9 | 9 | B.1.400 | 0.003861 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 8 | 8 | AY.9 | 0.000541 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 8 | 8 | B.1.36.29 | 0.004139 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 6 | 7 | AY.118 | 0.000376 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | B.1.1.306 | 0.003069 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | B.1.1.525 | 0.038251 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | B.1.177.21 | 0.000535 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | B.1.564 | 0.002981 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | B.1.609 | 0.003356 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 7 | 7 | P.1.1 | 0.002224 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 6 | 6 | AY.116 | 0.001721 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 6 | 6 | B.1.561 | 0.002382 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 5 | 5 | B.1.1.432 | 0.006329 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 5 | 5 | B.1.1.464 | 0.007364 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 5 | 5 | B.1.338 | 0.043103 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 5 | 5 | B.1.361 | 0.006443 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | AY.116.1 | 0.001246 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | AY.46.1 | 0.004107 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | AY.97 | 0.006803 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | B.1.36.1 | 0.004561 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | B.1.362 | 0.006163 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | B.1.404 | 0.005208 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | A | 0.001161 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | AY.40 | 0.002893 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.1.51 | 0.005155 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.160.9 | 0.021583 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.181 | 0.058824 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | B.1.544 | 0.018072 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AT.1 | 0.010256 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.1.200 | 0.014925 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.1.218 | 0.015385 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.1.67 | 0.009132 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.13 | 0.004751 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.160.26 | 0.004843 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.160.30 | 0.005952 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.23 | 0.012121 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.36.21 | 0.00432 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AH.1 | 0.142857 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.224 | 0.014286 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.1.461 | 0.012048 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.203 | 0.0625 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.225 | 0.015385 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.552 | 0.015152 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.5 | 0.038462 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp16 | 35 | T35I | aCa | aTa | 1 | 1 | V.2 | 0.032258 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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