CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 35

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1635T35IT6833InonsynaCaaTa13269132650.99969920761-20763
ORF1ab/nsp1635T35IT6833InonsynaCAaTC1326930.00022609120761-20763
ORF1ab/nsp1635T35IT6833InonsynaCAaTT1326910.000075363620761-20763
ORF1ab/nsp1635T35TT6833TsynacAacT13619610.70609820761-20763
ORF1ab/nsp1635T35TT6833TsynacAacG13613820.28067620761-20763
ORF1ab/nsp1635T35TT6833TsynacAacC1361180.013225620761-20763
ORF1ab/nsp1635T35PT6833PnonsynAcaCca1141130.99122820761-20763
ORF1ab/nsp1635T35PT6833PnonsynAcACcG11410.0087719320761-20763
ORF1ab/nsp1635T35AT6833AnonsynAcaGca70660.94285720761-20763
ORF1ab/nsp1635T35AT6833AnonsynAcAGcG7030.042857120761-20763
ORF1ab/nsp1635T35AT6833AnonsynAcAGcC7010.014285720761-20763
ORF1ab/nsp1635T35delT6833deldelACA---3838120761-20763
ORF1ab/nsp1635T35RT6833RnonsynaCaaGa33320.96969720761-20763
ORF1ab/nsp1635T35RT6833RnonsynACACGG3310.03030320761-20763
ORF1ab/nsp1635T35KT6833KnonsynaCaaAa18170.94444420761-20763
ORF1ab/nsp1635T35KT6833KnonsynaCAaAG1810.055555620761-20763
ORF1ab/nsp1635T35ST6833SnonsynAcaTca13120.92307720761-20763
ORF1ab/nsp1635T35ST6833SnonsynAcATcG1310.076923120761-20763
ORF1ab/nsp1635T35LT6833LnonsynACaCTa55120761-20763
ORF1ab/nsp1635T35VT6833VnonsynACaGTa520.420761-20763
ORF1ab/nsp1635T35VT6833VnonsynACAGTG520.420761-20763
ORF1ab/nsp1635T35VT6833VnonsynACAGTC510.220761-20763
ORF1ab/nsp1635T35MT6833MnonsynaCAaTG44120761-20763
ORF1ab/nsp1635T35del1T6833del1delacAac-22120761-20763
ORF1ab/nsp1635T35NT6833NnonsynaCAaAT210.520761-20763
ORF1ab/nsp1635T35NT6833NnonsynaCAaAC210.520761-20763
ORF1ab/nsp1635T35ET6833EnonsynACAGAG11120761-20763
ORF1ab/nsp1635T35DT6833DnonsynACAGAC11120761-20763
ORF1ab/nsp1635T35GT6833GnonsynACAGGG11120761-20763

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1635T35IaCaaTa1326513269All0.002537
ORF1ab/nsp1635T35IaCAaTC313269All0.000001
ORF1ab/nsp1635T35IaCAaTT113269All0
ORF1ab/nsp1635T35IaCaaTa20232023B.1.1.70.001811
ORF1ab/nsp1635T35TacAacT9611361All0.000184
ORF1ab/nsp1635T35TacAacG3821361All0.000073
ORF1ab/nsp1635T35TacAacC181361All0.000003
ORF1ab/nsp1635T35IaCaaTa12861286AY.1200.047812
ORF1ab/nsp1635T35IaCaaTa10641064B.1.1.4160.962896
ORF1ab/nsp1635T35TacAacT893914AY.440.005435
ORF1ab/nsp1635T35TacAacG20914AY.440.000122
ORF1ab/nsp1635T35TacAacC1914AY.440.000006
ORF1ab/nsp1635T35IaCaaTa722722B.1.3460.946265
ORF1ab/nsp1635T35IaCaaTa686686AY.430.003039
ORF1ab/nsp1635T35IaCaaTa658658AY.390.01626
ORF1ab/nsp1635T35IaCaaTa602602AY.40.000937
ORF1ab/nsp1635T35IaCaaTa560560B.10.005129
ORF1ab/nsp1635T35IaCaaTa418418B.1.617.20.001574
ORF1ab/nsp1635T35IaCaaTa380380AY.60.015629
ORF1ab/nsp1635T35IaCaaTa377378AY.30.00375
ORF1ab/nsp1635T35IaCAaTC1378AY.30.00001
ORF1ab/nsp1635T35IaCaaTa368368B.1.20.00324
ORF1ab/nsp1635T35IaCaaTa246246P.20.045913
ORF1ab/nsp1635T35IaCaaTa224224AY.420.009012
ORF1ab/nsp1635T35IaCaaTa209209B.1.6370.015272
ORF1ab/nsp1635T35TacAacG203204B.1.1.70.000182
ORF1ab/nsp1635T35TacAacC1204B.1.1.70.000001
ORF1ab/nsp1635T35IaCaaTa173174AY.440.001053
ORF1ab/nsp1635T35IaCAaTC1174AY.440.000006
ORF1ab/nsp1635T35IaCaaTa171171AY.250.001029
ORF1ab/nsp1635T35IaCaaTa162162AY.1030.001006
ORF1ab/nsp1635T35IaCaaTa125125B.1.10.002268
ORF1ab/nsp1635T35IaCaaTa122122AY.200.004742
ORF1ab/nsp1635T35IaCaaTa120120AY.1020.003182
ORF1ab/nsp1635T35PAcaCca113114All0.000022
ORF1ab/nsp1635T35PAcACcG1114All0
ORF1ab/nsp1635T35IaCaaTa9898P.1.150.02277
ORF1ab/nsp1635T35IaCaaTa9595B.1.360.013861
ORF1ab/nsp1635T35PAcaCca9393AY.750.00521
ORF1ab/nsp1635T35IaCaaTa9292AY.920.026429
ORF1ab/nsp1635T35IaCaaTa9191P.10.001434
ORF1ab/nsp1635T35IaCaaTa8181P.1.140.003872
ORF1ab/nsp1635T35IaCaaTa7171B.1.1770.000935
ORF1ab/nsp1635T35AAcaGca6670All0.000013
ORF1ab/nsp1635T35AAcAGcG370All0.000001
ORF1ab/nsp1635T35AAcAGcC170All0
ORF1ab/nsp1635T35IaCaaTa6969AY.230.004813
ORF1ab/nsp1635T35IaCaaTa6464AY.330.004274
ORF1ab/nsp1635T35IaCaaTa6464AY.460.006661
ORF1ab/nsp1635T35IaCaaTa6161B.1.6280.021494
ORF1ab/nsp1635T35IaCaaTa5959B.1.258.200.936508
ORF1ab/nsp1635T35IaCaaTa5757B.1.1.3180.0172
ORF1ab/nsp1635T35IaCaaTa5454AY.290.000852
ORF1ab/nsp1635T35IaCaaTa5353AY.4.20.00115
ORF1ab/nsp1635T35TacAacT4451B.1.617.20.000166
ORF1ab/nsp1635T35TacAacC451B.1.617.20.000015
ORF1ab/nsp1635T35TacAacG351B.1.617.20.000011
ORF1ab/nsp1635T35IaCaaTa4646B.1.5260.001081
ORF1ab/nsp1635T35TacAacG4545B.1.1.2070.053191
ORF1ab/nsp1635T35IaCaaTa4141B.1.1600.001279
ORF1ab/nsp1635T35IaCaaTa4040AY.370.012642
ORF1ab/nsp1635T35IaCaaTa4040B.1.4290.000941
ORF1ab/nsp1635T35IaCaaTa3939AY.1170.003296
ORF1ab/nsp1635T35delACA---3838All0.000007
ORF1ab/nsp1635T35IaCaaTa3838AY.50.000785
ORF1ab/nsp1635T35IaCaaTa3737AY.39.10.001466
ORF1ab/nsp1635T35IaCaaTa3636AY.840.015748
ORF1ab/nsp1635T35RaCaaGa3233All0.000006
ORF1ab/nsp1635T35RACACGG133All0
ORF1ab/nsp1635T35RaCaaGa2929AY.7.10.003268
ORF1ab/nsp1635T35IaCaaTa2929B.1.2210.00206
ORF1ab/nsp1635T35IaCaaTa2828B.1.1.4200.028169
ORF1ab/nsp1635T35TacAacG2626B.1.5260.000611
ORF1ab/nsp1635T35IaCaaTa2525AY.46.60.001805
ORF1ab/nsp1635T35IaCaaTa2525B.1.1.5190.000993
ORF1ab/nsp1635T35IaCaaTa2525B.1.5510.032258
ORF1ab/nsp1635T35IaCaaTa2424B.1.619.10.015394
ORF1ab/nsp1635T35IaCaaTa2323B.1.177.440.011936
ORF1ab/nsp1635T35IaCaaTa2323B.1.351.20.006959
ORF1ab/nsp1635T35IaCaaTa2323C.270.425926
ORF1ab/nsp1635T35IaCaaTa2222AY.99.20.002027
ORF1ab/nsp1635T35IaCaaTa2222B.1.1.2650.069401
ORF1ab/nsp1635T35IaCaaTa2222C.370.002553
ORF1ab/nsp1635T35IaCaaTa2020B.1.4270.00101
ORF1ab/nsp1635T35IaCaaTa2020B.1.5230.04902
ORF1ab/nsp1635T35KaCaaAa1718All0.000003
ORF1ab/nsp1635T35KaCAaAG118All0
ORF1ab/nsp1635T35IaCaaTa1818B.1.177.810.003408
ORF1ab/nsp1635T35IaCaaTa1818B.1.2150.173077
ORF1ab/nsp1635T35IaCaaTa1717AY.260.000481
ORF1ab/nsp1635T35IaCaaTa1717AY.470.000529
ORF1ab/nsp1635T35IaCaaTa1616B.1.2580.001065
ORF1ab/nsp1635T35IaCaaTa1616B.1.3510.000476
ORF1ab/nsp1635T35IaCaaTa1616R.10.00144
ORF1ab/nsp1635T35IaCaaTa1515AY.1000.00069
ORF1ab/nsp1635T35IaCaaTa1515AY.1040.029762
ORF1ab/nsp1635T35IaCaaTa1515AY.300.005936
ORF1ab/nsp1635T35IaCaaTa1515AY.360.002223
ORF1ab/nsp1635T35IaCaaTa1515B.1.1.250.008528
ORF1ab/nsp1635T35IaCaaTa1515B.1.466.20.005869
ORF1ab/nsp1635T35IaCaaTa1515B.1.5960.001307
ORF1ab/nsp1635T35AAcaGca1314AY.430.000058
ORF1ab/nsp1635T35AAcAGcG114AY.430.000004
ORF1ab/nsp1635T35IaCaaTa1414AY.770.015784
ORF1ab/nsp1635T35IaCaaTa1414P.1.70.00447
ORF1ab/nsp1635T35SAcaTca1213All0.000002
ORF1ab/nsp1635T35SAcATcG113All0
ORF1ab/nsp1635T35IaCaaTa1313AY.590.006886
ORF1ab/nsp1635T35IaCaaTa1313AY.610.001362
ORF1ab/nsp1635T35IaCaaTa1213B.1.5250.001358
ORF1ab/nsp1635T35IaCAaTC113B.1.5250.000113
ORF1ab/nsp1635T35IaCaaTa1313B.1.6210.001151
ORF1ab/nsp1635T35AAcaGca1212B.1.1.70.000011
ORF1ab/nsp1635T35IaCaaTa1010AY.1050.006431
ORF1ab/nsp1635T35TacAacG1010AY.60.000411
ORF1ab/nsp1635T35IaCaaTa1010AY.750.00056
ORF1ab/nsp1635T35IaCaaTa1010B.1.2340.001319
ORF1ab/nsp1635T35IaCaaTa99AY.1100.001014
ORF1ab/nsp1635T35IaCaaTa99AY.320.004792
ORF1ab/nsp1635T35IaCaaTa99AY.340.000873
ORF1ab/nsp1635T35TacAacG69AY.40.000009
ORF1ab/nsp1635T35TacAacT29AY.40.000003
ORF1ab/nsp1635T35TacAacC19AY.40.000002
ORF1ab/nsp1635T35IaCaaTa99AY.450.001095
ORF1ab/nsp1635T35IaCaaTa99AY.9.20.000331
ORF1ab/nsp1635T35IaCaaTa99AY.910.006574
ORF1ab/nsp1635T35IaCaaTa99B.1.4000.003861
ORF1ab/nsp1635T35IaCaaTa88AY.270.000518
ORF1ab/nsp1635T35TacAacG68AY.390.000148
ORF1ab/nsp1635T35TacAacT28AY.390.000049
ORF1ab/nsp1635T35IaCaaTa88AY.90.000541
ORF1ab/nsp1635T35TacAacG68B.10.000055
ORF1ab/nsp1635T35TacAacT28B.10.000018
ORF1ab/nsp1635T35delACA---88B.1.1.70.000007
ORF1ab/nsp1635T35IaCaaTa88B.1.36.290.004139
ORF1ab/nsp1635T35IaCaaTa88B.1.617.10.001032
ORF1ab/nsp1635T35TacAacG57AY.1030.000031
ORF1ab/nsp1635T35TacAacT27AY.1030.000012
ORF1ab/nsp1635T35IaCaaTa67AY.1180.000376
ORF1ab/nsp1635T35IaCAaTT17AY.1180.000063
ORF1ab/nsp1635T35TacAacG47AY.30.00004
ORF1ab/nsp1635T35TacAacT27AY.30.00002
ORF1ab/nsp1635T35TacAacC17AY.30.00001
ORF1ab/nsp1635T35KaCaaAa77AY.3.10.000597
ORF1ab/nsp1635T35IaCaaTa77AY.4.2.10.001043
ORF1ab/nsp1635T35IaCaaTa77AY.5.30.002362
ORF1ab/nsp1635T35IaCaaTa77AY.980.000553
ORF1ab/nsp1635T35IaCaaTa77B.1.1.2140.000388
ORF1ab/nsp1635T35IaCaaTa77B.1.1.280.002179
ORF1ab/nsp1635T35IaCaaTa77B.1.1.3060.003069
ORF1ab/nsp1635T35IaCaaTa77B.1.1.5250.038251
ORF1ab/nsp1635T35IaCaaTa77B.1.177.210.000535
ORF1ab/nsp1635T35SAcaTca77B.1.2210.000497
ORF1ab/nsp1635T35AAcaGca77B.1.3510.000208
ORF1ab/nsp1635T35IaCaaTa77B.1.5640.002981
ORF1ab/nsp1635T35IaCaaTa77B.1.5950.001827
ORF1ab/nsp1635T35IaCaaTa77B.1.6090.003356
ORF1ab/nsp1635T35IaCaaTa77P.1.10.002224
ORF1ab/nsp1635T35IaCaaTa66AY.1160.001721
ORF1ab/nsp1635T35TacAacT46AY.430.000018
ORF1ab/nsp1635T35TacAacG26AY.430.000009
ORF1ab/nsp1635T35AAcaGca66B.1.1.470.032086
ORF1ab/nsp1635T35PAcaCca66B.1.1.70.000005
ORF1ab/nsp1635T35IaCaaTa66B.1.5610.002382
ORF1ab/nsp1635T35LACaCTa55All0.000001
ORF1ab/nsp1635T35VACAGTG25All0
ORF1ab/nsp1635T35VACaGTa25All0
ORF1ab/nsp1635T35VACAGTC15All0
ORF1ab/nsp1635T35TacAacG55AY.1180.000313
ORF1ab/nsp1635T35IaCaaTa55AY.5.40.001384
ORF1ab/nsp1635T35IaCaaTa55AY.740.000578
ORF1ab/nsp1635T35IaCaaTa55B.1.1.2220.00102
ORF1ab/nsp1635T35IaCaaTa55B.1.1.3170.002058
ORF1ab/nsp1635T35IaCaaTa55B.1.1.4320.006329
ORF1ab/nsp1635T35IaCaaTa55B.1.1.4640.007364
ORF1ab/nsp1635T35TacAacG35B.1.1770.00004
ORF1ab/nsp1635T35TacAacC25B.1.1770.000026
ORF1ab/nsp1635T35IaCaaTa55B.1.2400.001078
ORF1ab/nsp1635T35IaCaaTa55B.1.2430.000348
ORF1ab/nsp1635T35IaCaaTa55B.1.3380.043103
ORF1ab/nsp1635T35IaCaaTa55B.1.3610.006443
ORF1ab/nsp1635T35AAcaGca55C.160.005302
ORF1ab/nsp1635T35IaCaaTa55D.20.000375
ORF1ab/nsp1635T35delACA---440.222222
ORF1ab/nsp1635T35IaCaaTa44A.2.50.001996
ORF1ab/nsp1635T35MaCAaTG44All0.000001
ORF1ab/nsp1635T35IaCaaTa44AY.1010.001962
ORF1ab/nsp1635T35TacAacC44AY.1020.000106
ORF1ab/nsp1635T35IaCaaTa44AY.116.10.001246
ORF1ab/nsp1635T35IaCaaTa44AY.1190.000141
ORF1ab/nsp1635T35IaCaaTa44AY.46.10.004107
ORF1ab/nsp1635T35IaCaaTa44AY.950.003044
ORF1ab/nsp1635T35IaCaaTa44AY.970.006803
ORF1ab/nsp1635T35IaCaaTa44B.1.1.330.001684
ORF1ab/nsp1635T35IaCaaTa44B.1.1.3480.003185
ORF1ab/nsp1635T35IaCaaTa44B.1.36.10.004561
ORF1ab/nsp1635T35IaCaaTa44B.1.3620.006163
ORF1ab/nsp1635T35IaCaaTa44B.1.4040.005208
ORF1ab/nsp1635T35IaCaaTa44Q.80.00066
ORF1ab/nsp1635T35TacAacT230.111111
ORF1ab/nsp1635T35TacAacG130.055556
ORF1ab/nsp1635T35IaCaaTa33A0.001161
ORF1ab/nsp1635T35IaCaaTa33A.2.5.20.004717
ORF1ab/nsp1635T35IaCaaTa33AY.1110.000549
ORF1ab/nsp1635T35IaCaaTa33AY.120.000948
ORF1ab/nsp1635T35IaCaaTa33AY.29.10.000662
ORF1ab/nsp1635T35IaCaaTa33AY.3.10.000256
ORF1ab/nsp1635T35IaCaaTa33AY.380.001498
ORF1ab/nsp1635T35IaCaaTa33AY.400.002893
ORF1ab/nsp1635T35PAcaCca23AY.430.000009
ORF1ab/nsp1635T35PAcACcG13AY.430.000004
ORF1ab/nsp1635T35IaCaaTa33AY.46.40.000494
ORF1ab/nsp1635T35IaCaaTa33AY.540.000286
ORF1ab/nsp1635T35IaCaaTa33AY.640.001786
ORF1ab/nsp1635T35IaCaaTa33AY.75.10.000541
ORF1ab/nsp1635T35IaCaaTa33AY.98.10.000145
ORF1ab/nsp1635T35TacAacG33B.1.10.000054
ORF1ab/nsp1635T35IaCaaTa33B.1.1.4340.001046
ORF1ab/nsp1635T35IaCaaTa33B.1.1.510.005155
ORF1ab/nsp1635T35IaCaaTa33B.1.160.90.021583
ORF1ab/nsp1635T35AAcaGca33B.1.1770.00004
ORF1ab/nsp1635T35IaCaaTa33B.1.177.70.000495
ORF1ab/nsp1635T35IaCaaTa33B.1.1810.058824
ORF1ab/nsp1635T35IaCaaTa33B.1.2360.00616
ORF1ab/nsp1635T35IaCaaTa33B.1.2410.002435
ORF1ab/nsp1635T35TacAacG23B.1.360.000292
ORF1ab/nsp1635T35TacAacT13B.1.360.000146
ORF1ab/nsp1635T35IaCaaTa33B.1.3690.000856
ORF1ab/nsp1635T35IaCaaTa33B.1.3960.002117
ORF1ab/nsp1635T35IaCaaTa33B.1.4280.003061
ORF1ab/nsp1635T35IaCaaTa33B.1.5170.001281
ORF1ab/nsp1635T35IaCaaTa33B.1.5440.018072
ORF1ab/nsp1635T35IaCaaTa33C.360.002732
ORF1ab/nsp1635T35IaCaaTa33N.50.0053
ORF1ab/nsp1635T35IaCaaTa220.111111
ORF1ab/nsp1635T35PAcaCca220.111111
ORF1ab/nsp1635T35VACaGTa120.055556
ORF1ab/nsp1635T35AAcaGca120.055556
ORF1ab/nsp1635T35AAcAGcG120.055556
ORF1ab/nsp1635T35VACAGTG120.055556
ORF1ab/nsp1635T35IaCaaTa22A.20.001324
ORF1ab/nsp1635T35del1acAac-22All0
ORF1ab/nsp1635T35NaCAaAT12All0
ORF1ab/nsp1635T35NaCAaAC12All0
ORF1ab/nsp1635T35IaCaaTa22AT.10.010256
ORF1ab/nsp1635T35IaCaaTa22AY.10.000791
ORF1ab/nsp1635T35IaCaaTa22AY.1130.000285
ORF1ab/nsp1635T35TacAacT12AY.1190.000035
ORF1ab/nsp1635T35TacAacG12AY.1190.000035
ORF1ab/nsp1635T35IaCaaTa22AY.130.000322
ORF1ab/nsp1635T35delACA---22AY.250.000012
ORF1ab/nsp1635T35VACAGTG12AY.30.00001
ORF1ab/nsp1635T35AAcAGcC12AY.30.00001
ORF1ab/nsp1635T35VACAGTC12AY.30.00001
ORF1ab/nsp1635T35AAcAGcG12AY.30.00001
ORF1ab/nsp1635T35AAcaGca22AY.40.000003
ORF1ab/nsp1635T35delACA---22AY.4.50.000215
ORF1ab/nsp1635T35IaCaaTa22AY.4.50.000215
ORF1ab/nsp1635T35AAcaGca22AY.440.000012
ORF1ab/nsp1635T35IaCaaTa22AY.46.20.001271
ORF1ab/nsp1635T35IaCaaTa22AY.46.30.001867
ORF1ab/nsp1635T35delACA---22AY.46.60.000144
ORF1ab/nsp1635T35IaCaaTa22AY.510.001818
ORF1ab/nsp1635T35IaCaaTa22AY.530.000575
ORF1ab/nsp1635T35IaCaaTa22AY.7.10.000225
ORF1ab/nsp1635T35IaCaaTa22AY.700.000417
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