CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 34 | A34V | A6832V | nonsyn | gCa | gTa | 9530 | 9528 | 0.99979 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34V | A6832V | nonsyn | gCA | gTC | 9530 | 1 | 0.000104932 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34V | A6832V | nonsyn | gCA | gTT | 9530 | 1 | 0.000104932 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34S | A6832S | nonsyn | Gca | Tca | 406 | 404 | 0.995074 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34S | A6832S | nonsyn | GcA | TcT | 406 | 1 | 0.00246305 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34S | A6832S | nonsyn | GcA | TcG | 406 | 1 | 0.00246305 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34A | A6832A | syn | gcA | gcG | 200 | 138 | 0.69 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34A | A6832A | syn | gcA | gcT | 200 | 53 | 0.265 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34A | A6832A | syn | gcA | gcC | 200 | 9 | 0.045 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34E | A6832E | nonsyn | gCa | gAa | 86 | 85 | 0.988372 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34E | A6832E | nonsyn | gCA | gAG | 86 | 1 | 0.0116279 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34T | A6832T | nonsyn | Gca | Aca | 58 | 57 | 0.982759 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34T | A6832T | nonsyn | GcA | AcT | 58 | 1 | 0.0172414 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34del | A6832del | del | GCA | --- | 36 | 36 | 1 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34P | A6832P | nonsyn | Gca | Cca | 5 | 5 | 1 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34G | A6832G | nonsyn | gCa | gGa | 4 | 4 | 1 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34X | A6832X | nonsyn | GCa | TGa | 2 | 2 | 1 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34del2 | A6832del2 | del | GCa | --a | 2 | 2 | 1 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34K | A6832K | nonsyn | GCa | AAa | 1 | 1 | 1 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34N | A6832N | nonsyn | GCA | AAT | 1 | 1 | 1 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34I | A6832I | nonsyn | GCa | ATa | 1 | 1 | 1 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34del1 | A6832del1 | del | gcA | gc- | 1 | 1 | 1 | 20758-20760 |
ORF1ab/nsp16 | 34 | A34D | A6832D | nonsyn | gCA | gAT | 1 | 1 | 1 | 20758-20760 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 9528 | 9530 | All | 0.001822 |
ORF1ab/nsp16 | 34 | A34V | gCA | gTC | 1 | 9530 | All | 0 |
ORF1ab/nsp16 | 34 | A34V | gCA | gTT | 1 | 9530 | All | 0 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1784 | 1784 | B.1.243 | 0.124139 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1006 | 1006 | AY.92 | 0.288997 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 928 | 928 | B.1.1.7 | 0.000831 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 747 | 747 | AY.4 | 0.001163 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 417 | 417 | B.1.2 | 0.003672 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 411 | 411 | B.1.1 | 0.007456 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 404 | 406 | All | 0.000077 |
ORF1ab/nsp16 | 34 | A34S | GcA | TcT | 1 | 406 | All | 0 |
ORF1ab/nsp16 | 34 | A34S | GcA | TcG | 1 | 406 | All | 0 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 329 | 329 | B.1 | 0.003013 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 280 | 280 | B.1.617.2 | 0.001054 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 224 | 224 | AY.25 | 0.001347 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 203 | 203 | B.1.1.519 | 0.008061 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 138 | 200 | All | 0.000026 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 53 | 200 | All | 0.00001 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcC | 9 | 200 | All | 0.000002 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 173 | 174 | AY.9.2 | 0.006354 |
ORF1ab/nsp16 | 34 | A34V | gCA | gTT | 1 | 174 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 170 | 170 | AT.1 | 0.871795 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 159 | 159 | AY.44 | 0.000968 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 134 | 134 | AY.3 | 0.001333 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 126 | 126 | B.1.36 | 0.018383 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 112 | 112 | P.1 | 0.001764 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 106 | 106 | B.1.438.1 | 0.01137 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 98 | 98 | AY.45 | 0.011925 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 91 | 91 | AY.119 | 0.003213 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 87 | 87 | B.1.1.518 | 0.550633 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 85 | 86 | All | 0.000016 |
ORF1ab/nsp16 | 34 | A34E | gCA | gAG | 1 | 86 | All | 0 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 83 | 83 | B.1.177 | 0.001093 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 79 | 79 | AY.103 | 0.000491 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 72 | 72 | AY.4 | 0.000112 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 71 | 71 | AY.39.1 | 0.002813 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 67 | 67 | AY.43 | 0.000297 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 65 | 65 | B.1.293 | 0.8125 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 57 | 58 | All | 0.000011 |
ORF1ab/nsp16 | 34 | A34T | GcA | AcT | 1 | 58 | All | 0 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 58 | 58 | AY.29 | 0.000915 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 49 | 49 | B.1.234 | 0.006465 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 41 | 41 | B.1.1.318 | 0.012372 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 40 | 40 | AY.7 | 0.00784 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 40 | 40 | B.1.351 | 0.001189 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 38 | 38 | AY.120 | 0.001413 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 38 | 38 | P.1.12 | 0.018393 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 36 | 36 | All | 0.000007 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 35 | 35 | B.1 | 0.000321 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 34 | 34 | B.1.177 | 0.000448 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 31 | 31 | B.1.517 | 0.013237 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 30 | 30 | AY.102 | 0.000795 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 29 | 29 | B.1.258 | 0.00193 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 29 | 29 | B.1.596 | 0.002527 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 28 | 28 | AY.46.1 | 0.028747 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 28 | 28 | B.1.427 | 0.001414 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 28 | 28 | B.1.575 | 0.008495 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 27 | 27 | B.1.497 | 0.008499 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 26 | 26 | AY.27 | 0.001683 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 26 | 26 | AY.39 | 0.000642 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 26 | 26 | B.1.1.89 | 0.157576 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 26 | 26 | B.1.565 | 0.02107 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 23 | 23 | AY.26 | 0.000651 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 23 | 23 | B.1.597 | 0.106481 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 10 | 22 | B.1.1.7 | 0.000009 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 9 | 22 | B.1.1.7 | 0.000008 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcC | 3 | 22 | B.1.1.7 | 0.000003 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 22 | 22 | B.1.621 | 0.001947 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 21 | 21 | AY.33 | 0.001402 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 21 | 21 | B.1.429 | 0.000494 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 21 | 21 | B.1.617.2 | 0.000079 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 20 | 20 | B.1.1.222 | 0.00408 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 19 | 19 | B.1.1.486 | 0.029968 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 19 | 19 | B.1.240 | 0.004096 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 18 | 18 | AY.59 | 0.009534 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 18 | 18 | AY.98.1 | 0.000872 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 18 | 18 | B.1.221 | 0.001279 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 16 | 16 | AY.4.2 | 0.000347 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 15 | 15 | B.1.1.432 | 0.018987 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 15 | 15 | B.1.438.1 | 0.001609 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 14 | 14 | AY.3.1 | 0.001194 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 14 | 14 | AY.46.6 | 0.001011 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 14 | 14 | AY.61 | 0.001467 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 14 | 14 | AY.75 | 0.000784 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 14 | 14 | B.1.617.1 | 0.001806 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 14 | 14 | B.1.620 | 0.013245 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 9 | 13 | AY.4 | 0.000014 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 4 | 13 | AY.4 | 0.000006 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 12 | 12 | B.1.1.67 | 0.054795 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 12 | 12 | B.1.400 | 0.005148 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 12 | 12 | B.1.595 | 0.003132 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 11 | 11 | AY.117 | 0.00093 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 11 | 11 | AY.118 | 0.000689 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 11 | 11 | AY.13 | 0.001771 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 10 | 11 | AY.43 | 0.000044 |
ORF1ab/nsp16 | 34 | A34E | gCA | gAG | 1 | 11 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 11 | 11 | B.40 | 0.004007 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 10 | 10 | AY.14 | 0.00088 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 10 | 10 | B.1.169 | 0.149254 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 10 | 10 | B.1.177.82 | 0.004773 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 9 | 9 | AY.109 | 0.006657 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 9 | 9 | AY.62 | 0.003922 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 9 | 9 | B.1.1.28 | 0.002801 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 9 | 9 | B.1.177.86 | 0.001651 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 9 | 9 | Q.4 | 0.004093 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 8 | 8 | B.1.1.25 | 0.004548 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 8 | 8 | B.1.1.33 | 0.003367 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 8 | 8 | B.1.1.371 | 0.083333 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 8 | 8 | B.1.177.4 | 0.001688 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 8 | 8 | B.1.466.2 | 0.00313 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 4 | 8 | B.1.617.2 | 0.000015 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 4 | 8 | B.1.617.2 | 0.000015 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 7 | 7 | B.1.1.224 | 0.1 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 7 | 7 | B.1.1.57 | 0.08046 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 7 | 7 | B.1.428 | 0.007143 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 7 | 7 | N.2 | 0.269231 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 7 | 7 | P.1.7 | 0.002235 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | A | 0.002322 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | AY.87 | 0.004996 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | B.1.149 | 0.020548 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | B.1.270 | 0.033708 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | B.1.36.18 | 0.002521 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | B.1.398 | 0.017857 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 6 | 6 | B.1.620 | 0.005676 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 6 | 6 | N.2 | 0.230769 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp16 | 34 | A34P | Gca | Cca | 5 | 5 | All | 0.000001 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 5 | AY.113 | 0.00057 |
ORF1ab/nsp16 | 34 | A34V | gCA | gTC | 1 | 5 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 5 | 5 | AY.41 | 0.00147 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 5 | 5 | B.1.177.10 | 0.00439 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 5 | 5 | B.1.459 | 0.020408 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp16 | 34 | A34G | gCa | gGa | 4 | 4 | All | 0.000001 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | AY.16 | 0.001519 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 3 | 4 | AY.25 | 0.000018 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 4 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 2 | 4 | AY.43 | 0.000009 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 2 | 4 | AY.43 | 0.000009 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | B.1.1.433 | 0.005698 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 3 | 4 | B.1.2 | 0.000026 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 4 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | B.1.237 | 0.0199 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | B.1.425 | 0.011976 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | B.1.438.4 | 0.085106 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B | 0.000383 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.131 | 0.026316 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.146 | 0.012712 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.177.56 | 0.002003 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.240.1 | 0.075 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.523 | 0.007353 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | B.1.588 | 0.00273 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 34 | A34S | GcA | TcT | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | C.37.1 | 0.007853 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp16 | 34 | A34T | GcA | AcT | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp16 | 34 | A34del2 | GCa | --a | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 34 | A34X | GCa | TGa | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AY.39.1.1 | 0.001449 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcC | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 34 | A34P | Gca | Cca | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.116 | 0.125 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.130 | 0.030769 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.160 | 0.047619 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.170 | 0.002494 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.1.417 | 0.005405 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.110.1 | 0.2 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.214.3 | 0.014286 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 2 | 2 | B.1.323 | 0.041667 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.381 | 0.015625 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | C.11 | 0.021277 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 34 | A34K | GCa | AAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 34 | A34N | GCA | AAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 34 | A34D | gCA | gAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp16 | 34 | A34N | GCA | AAT | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 34 | A34I | GCa | ATa | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 34 | A34D | gCA | gAT | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 34 | A34del1 | gcA | gc- | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 34 | A34K | GCa | AAa | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 34 | A34P | Gca | Cca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 34 | A34del2 | GCa | --a | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp16 | 34 | A34S | GcA | TcG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 34 | A34del1 | gcA | gc- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 34 | A34G | gCa | gGa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.125 | 0.010204 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.401 | 0.066667 |
ORF1ab/nsp16 | 34 | A34G | gCa | gGa | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.459 | 0.015385 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp16 | 34 | A34del2 | GCa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | B.1.117 | 0.0125 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.120 | 0.007692 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 34 | A34P | Gca | Cca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 34 | A34G | gCa | gGa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 34 | A34X | GCa | TGa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 34 | A34P | Gca | Cca | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.323 | 0.020833 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.407 | 0.035714 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.421 | 0.007463 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 34 | A34I | GCa | ATa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 34 | A34X | GCa | TGa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 34 | A34G | gCa | gGa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.33 | 0.021277 |
ORF1ab/nsp16 | 34 | A34E | gCa | gAa | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | C.12 | 0.007194 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | C.9 | 0.030303 |
ORF1ab/nsp16 | 34 | A34S | Gca | Tca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp16 | 34 | A34T | Gca | Aca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcC | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 34 | A34del | GCA | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcG | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcT | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp16 | 34 | A34A | gcA | gcC | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp16 | 34 | A34V | gCa | gTa | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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