CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 33 | S33I | S6831I | nonsyn | aGt | aTt | 1557 | 1554 | 0.998073 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33I | S6831I | nonsyn | aGT | aTA | 1557 | 2 | 0.00128452 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33I | S6831I | nonsyn | aGT | aTC | 1557 | 1 | 0.000642261 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33S | S6831S | syn | agT | agC | 758 | 757 | 0.998681 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33S | S6831S | syn | AGT | TCG | 758 | 1 | 0.00131926 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33G | S6831G | nonsyn | Agt | Ggt | 565 | 562 | 0.99469 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33G | S6831G | nonsyn | AgT | GgA | 565 | 2 | 0.00353982 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33G | S6831G | nonsyn | AgT | GgC | 565 | 1 | 0.00176991 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33R | S6831R | nonsyn | Agt | Cgt | 539 | 511 | 0.948052 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33R | S6831R | nonsyn | agT | agA | 539 | 14 | 0.025974 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33R | S6831R | nonsyn | agT | agG | 539 | 14 | 0.025974 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33N | S6831N | nonsyn | aGt | aAt | 210 | 209 | 0.995238 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33N | S6831N | nonsyn | aGT | aAC | 210 | 1 | 0.0047619 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33del | S6831del | del | AGT | --- | 43 | 43 | 1 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33K | S6831K | nonsyn | aGT | aAA | 26 | 26 | 1 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33C | S6831C | nonsyn | Agt | Tgt | 19 | 18 | 0.947368 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33C | S6831C | nonsyn | AgT | TgC | 19 | 1 | 0.0526316 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33T | S6831T | nonsyn | aGt | aCt | 7 | 7 | 1 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33del2 | S6831del2 | del | AGt | --t | 5 | 5 | 1 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33W | S6831W | nonsyn | AgT | TgG | 3 | 3 | 1 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33V | S6831V | nonsyn | AGt | GTt | 3 | 2 | 0.666667 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33del1 | S6831del1 | del | AGt | -At | 3 | 1 | 0.333333 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33del1 | S6831del1 | del | agT | ag- | 3 | 1 | 0.333333 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33V | S6831V | nonsyn | AGT | GTA | 3 | 1 | 0.333333 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33del1 | S6831del1 | del | Agt | -gt | 3 | 1 | 0.333333 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33F | S6831F | nonsyn | AGt | TTt | 2 | 2 | 1 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33E | S6831E | nonsyn | AGT | GAA | 2 | 2 | 1 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33D | S6831D | nonsyn | AGt | GAt | 1 | 1 | 1 | 20755-20757 |
ORF1ab/nsp16 | 33 | S33L | S6831L | nonsyn | AGt | CTt | 1 | 1 | 1 | 20755-20757 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1554 | 1557 | All | 0.000297 |
ORF1ab/nsp16 | 33 | S33I | aGT | aTA | 2 | 1557 | All | 0 |
ORF1ab/nsp16 | 33 | S33I | aGT | aTC | 1 | 1557 | All | 0 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 757 | 758 | All | 0.000145 |
ORF1ab/nsp16 | 33 | S33S | AGT | TCG | 1 | 758 | All | 0 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 562 | 565 | All | 0.000107 |
ORF1ab/nsp16 | 33 | S33G | AgT | GgA | 2 | 565 | All | 0 |
ORF1ab/nsp16 | 33 | S33G | AgT | GgC | 1 | 565 | All | 0 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 511 | 539 | All | 0.000098 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 14 | 539 | All | 0.000003 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 14 | 539 | All | 0.000003 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 465 | 465 | B.1.1.7 | 0.000416 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 370 | 370 | B.1 | 0.003389 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 209 | 210 | All | 0.00004 |
ORF1ab/nsp16 | 33 | S33N | aGT | aAC | 1 | 210 | All | 0 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 208 | 208 | AY.113 | 0.029617 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 201 | 201 | B.1.621 | 0.017792 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 194 | 194 | B.1.617.2 | 0.00073 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 149 | 149 | B.1.1.7 | 0.000133 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 136 | 136 | AY.43 | 0.000603 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 130 | 130 | AY.102 | 0.003447 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 118 | 118 | B.1.1.243 | 0.481633 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 108 | 108 | B.1.1.7 | 0.000097 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 93 | 93 | AY.4 | 0.000145 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 77 | 77 | B.1.445 | 0.905882 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 75 | 75 | B.1.398 | 0.223214 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 68 | 68 | B.1.429 | 0.0016 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 46 | 46 | AY.25 | 0.000277 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 44 | 44 | AY.3 | 0.000438 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 43 | 43 | All | 0.000008 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 39 | 40 | B.1.617.2 | 0.000147 |
ORF1ab/nsp16 | 33 | S33G | AgT | GgC | 1 | 40 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 37 | 37 | B.1.1 | 0.000671 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 37 | 37 | B.1.527 | 0.137037 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 35 | 35 | AY.118 | 0.002193 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 34 | 34 | B.1.177 | 0.000448 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 34 | 34 | B.1.177 | 0.000448 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 31 | 31 | B.1.526 | 0.000729 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 29 | 29 | B.1.308 | 1 |
ORF1ab/nsp16 | 33 | S33K | aGT | aAA | 26 | 26 | All | 0.000005 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 24 | 24 | B.1.177.81 | 0.004544 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 23 | 23 | B.1.438.1 | 0.002467 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 21 | 21 | B.1.621 | 0.001859 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 20 | 20 | B.1.310 | 0.952381 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 18 | 19 | All | 0.000003 |
ORF1ab/nsp16 | 33 | S33C | AgT | TgC | 1 | 19 | All | 0 |
ORF1ab/nsp16 | 33 | S33K | aGT | aAA | 19 | 19 | B.1.429 | 0.000447 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 14 | 14 | B.1.214.3 | 0.1 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 13 | 13 | AY.29 | 0.000205 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 13 | 13 | B.1.1.464 | 0.019146 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 13 | 13 | B.1.1.521 | 0.069519 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 12 | 12 | AY.99.2 | 0.001106 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 11 | 11 | AY.100 | 0.000506 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 10 | 10 | AY.35 | 0.00233 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 10 | 10 | AY.4.2 | 0.000217 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 9 | 9 | AY.46.5 | 0.001786 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 8 | 8 | C.14 | 0.034632 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 7 | 7 | A.2.5 | 0.003493 |
ORF1ab/nsp16 | 33 | S33T | aGt | aCt | 7 | 7 | All | 0.000001 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 7 | 7 | AY.53 | 0.002013 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 7 | 7 | B.1.1.232 | 0.012704 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 7 | 7 | B.1.1.303 | 0.019337 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 6 | 6 | 0.333333 | |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 6 | 6 | B.1.177.4 | 0.001266 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp16 | 33 | S33del2 | AGt | --t | 5 | 5 | All | 0.000001 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 4 | 5 | AY.43 | 0.000018 |
ORF1ab/nsp16 | 33 | S33G | AgT | GgA | 1 | 5 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 4 | 4 | AY.120.1 | 0.001284 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 3 | 4 | AY.43 | 0.000013 |
ORF1ab/nsp16 | 33 | S33S | AGT | TCG | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp16 | 33 | S33K | aGT | aAA | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 4 | 4 | B.1.568 | 0.004444 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 4 | 4 | B.1.576 | 0.003626 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp16 | 33 | S33W | AgT | TgG | 3 | 3 | All | 0.000001 |
ORF1ab/nsp16 | 33 | S33V | AGt | GTt | 2 | 3 | All | 0 |
ORF1ab/nsp16 | 33 | S33del1 | AGt | -At | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 33 | S33del1 | agT | ag- | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 33 | S33V | AGT | GTA | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 33 | S33del1 | Agt | -gt | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp16 | 33 | S33T | aGt | aCt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | B.1.1.10 | 0.003344 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 33 | S33N | aGT | aAC | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | B.1.160.16 | 0.002788 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 3 | 3 | B.1.416.1 | 0.004687 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 3 | 3 | C.17 | 0.166667 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 3 | 3 | P.1.9 | 0.014423 |
ORF1ab/nsp16 | 33 | S33I | aGT | aTA | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 33 | S33G | AgT | GgA | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 33 | S33V | AGT | GTA | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 33 | S33V | AGt | GTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp16 | 33 | S33E | AGT | GAA | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 33 | S33F | AGt | TTt | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 33 | S33W | AgT | TgG | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp16 | 33 | S33I | aGT | aTC | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | B.1.1.266 | 0.02439 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 33 | S33I | aGT | aTA | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 2 | 2 | B.1.323 | 0.041667 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 2 | 2 | B.1.453 | 0.006472 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | B.1.544 | 0.012048 |
ORF1ab/nsp16 | 33 | S33T | aGt | aCt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 2 | 2 | B.1.78 | 0.017094 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | B.3.1 | 0.003317 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 33 | S33K | aGT | aAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 33 | S33E | AGT | GAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 33 | S33D | AGt | GAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp16 | 33 | S33L | AGt | CTt | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 33 | S33D | AGt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 33 | S33K | aGT | aAA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp16 | 33 | S33del2 | AGt | --t | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 33 | S33del2 | AGt | --t | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 33 | S33T | aGt | aCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 33 | S33C | AgT | TgC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 33 | S33E | AGT | GAA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 33 | S33del1 | agT | ag- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 33 | S33W | AgT | TgG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp16 | 33 | S33L | AGt | CTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.181 | 0.004545 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp16 | 33 | S33F | AGt | TTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp16 | 33 | S33T | aGt | aCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 33 | S33del1 | Agt | -gt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.112 | 0.005181 |
ORF1ab/nsp16 | 33 | S33R | agT | agG | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 33 | S33del2 | AGt | --t | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 1 | 1 | B.1.390 | 0.010638 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.40 | 0.019608 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 33 | S33K | aGT | aAA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 33 | S33R | agT | agA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp16 | 33 | S33C | Agt | Tgt | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.513 | 0.013889 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 33 | S33del1 | AGt | -At | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 33 | S33V | AGt | GTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 33 | S33R | Agt | Cgt | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp16 | 33 | S33S | agT | agC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 33 | S33N | aGt | aAt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 33 | S33F | AGt | TTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp16 | 33 | S33del2 | AGt | --t | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 33 | S33del | AGT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp16 | 33 | S33G | Agt | Ggt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp16 | 33 | S33I | aGt | aTt | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp16 | 33 | S33del2 | AGt | --t | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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