CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 30

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1630Y30YY6828YsyntaTtaC43974397120746-20748
ORF1ab/nsp1630Y30delY6828deldelTAT---5555120746-20748
ORF1ab/nsp1630Y30HY6828HnonsynTatCat870.87520746-20748
ORF1ab/nsp1630Y30HY6828HnonsynTaTCaC810.12520746-20748
ORF1ab/nsp1630Y30CY6828CnonsyntAttGt760.85714320746-20748
ORF1ab/nsp1630Y30XY6828XnonsyntaTtaG750.71428620746-20748
ORF1ab/nsp1630Y30XY6828XnonsyntaTtaA710.14285720746-20748
ORF1ab/nsp1630Y30CY6828CnonsyntATtGC710.14285720746-20748
ORF1ab/nsp1630Y30XY6828XnonsyntATtGA710.14285720746-20748
ORF1ab/nsp1630Y30NY6828NnonsynTatAat430.7520746-20748
ORF1ab/nsp1630Y30NY6828NnonsynTaTAaC410.2520746-20748
ORF1ab/nsp1630Y30DY6828DnonsynTatGat33120746-20748
ORF1ab/nsp1630Y30FY6828FnonsyntAttTt33120746-20748
ORF1ab/nsp1630Y30RY6828RnonsynTAtCGt320.66666720746-20748
ORF1ab/nsp1630Y30SY6828SnonsyntAttCt320.66666720746-20748
ORF1ab/nsp1630Y30RY6828RnonsynTATCGC310.33333320746-20748
ORF1ab/nsp1630Y30SY6828SnonsyntATtCC310.33333320746-20748
ORF1ab/nsp1630Y30del2Y6828del2delTATC--22120746-20748
ORF1ab/nsp1630Y30del1Y6828del1delTat-at210.520746-20748
ORF1ab/nsp1630Y30del1Y6828del1deltaTta-210.520746-20748
ORF1ab/nsp1630Y30IY6828InonsynTATATC11120746-20748
ORF1ab/nsp1630Y30AY6828AnonsynTAtGCt11120746-20748
ORF1ab/nsp1630Y30TY6828TnonsynTATACC11120746-20748

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1630Y30YtaTtaC43974397All0.000841
ORF1ab/nsp1630Y30YtaTtaC31793179B.1.5750.964502
ORF1ab/nsp1630Y30YtaTtaC393393B.1.575.10.958537
ORF1ab/nsp1630Y30YtaTtaC208208B.1.575.21
ORF1ab/nsp1630Y30YtaTtaC145145B.1.5760.13146
ORF1ab/nsp1630Y30YtaTtaC123123B.1.1.70.00011
ORF1ab/nsp1630Y30YtaTtaC8383B.10.00076
ORF1ab/nsp1630Y30YtaTtaC7272B.1.3630.935065
ORF1ab/nsp1630Y30delTAT---5555All0.000011
ORF1ab/nsp1630Y30YtaTtaC2828B.1.4270.001414
ORF1ab/nsp1630Y30YtaTtaC2323B.1.5950.006002
ORF1ab/nsp1630Y30YtaTtaC1616B.1.10.00029
ORF1ab/nsp1630Y30delTAT---1111B.1.1.70.00001
ORF1ab/nsp1630Y30YtaTtaC1010AY.40.000016
ORF1ab/nsp1630Y30YtaTtaC99B.1.177.810.001704
ORF1ab/nsp1630Y30YtaTtaC99B.1.617.20.000034
ORF1ab/nsp1630Y30HTatCat78All0.000001
ORF1ab/nsp1630Y30HTaTCaC18All0
ORF1ab/nsp1630Y30YtaTtaC88B.1.1770.000105
ORF1ab/nsp1630Y30CtAttGt67All0.000001
ORF1ab/nsp1630Y30XtaTtaG57All0.000001
ORF1ab/nsp1630Y30XtaTtaA17All0
ORF1ab/nsp1630Y30CtATtGC17All0
ORF1ab/nsp1630Y30XtATtGA17All0
ORF1ab/nsp1630Y30YtaTtaC77AY.1030.000043
ORF1ab/nsp1630Y30delTAT---660.333333
ORF1ab/nsp1630Y30YtaTtaC66AY.440.000037
ORF1ab/nsp1630Y30YtaTtaC55AY.390.000124
ORF1ab/nsp1630Y30YtaTtaC55B.1.258.160.008183
ORF1ab/nsp1630Y30YtaTtaC55B.1.6230.002682
ORF1ab/nsp1630Y30NTatAat34All0.000001
ORF1ab/nsp1630Y30NTaTAaC14All0
ORF1ab/nsp1630Y30YtaTtaC44B.1.177.830.005926
ORF1ab/nsp1630Y30YtaTtaC44B.1.20.000035
ORF1ab/nsp1630Y30YtaTtaC44B.1.2580.000266
ORF1ab/nsp1630Y30YtaTtaC44B.1.5170.001708
ORF1ab/nsp1630Y30delTAT---44B.1.617.20.000015
ORF1ab/nsp1630Y30FtAttTt33All0.000001
ORF1ab/nsp1630Y30DTatGat33All0.000001
ORF1ab/nsp1630Y30StAttCt23All0
ORF1ab/nsp1630Y30RTAtCGt23All0
ORF1ab/nsp1630Y30RTATCGC13All0
ORF1ab/nsp1630Y30StATtCC13All0
ORF1ab/nsp1630Y30YtaTtaC33AY.30.00003
ORF1ab/nsp1630Y30delTAT---33B.1.10.000054
ORF1ab/nsp1630Y30FtAttTt33B.1.1.70.000003
ORF1ab/nsp1630Y30YtaTtaC33P.10.000047
ORF1ab/nsp1630Y30del2TATC--220.111111
ORF1ab/nsp1630Y30RTATCGC120.055556
ORF1ab/nsp1630Y30RTAtCGt120.055556
ORF1ab/nsp1630Y30CtAttGt120.055556
ORF1ab/nsp1630Y30HTaTCaC120.055556
ORF1ab/nsp1630Y30CtATtGC120.055556
ORF1ab/nsp1630Y30HTatCat120.055556
ORF1ab/nsp1630Y30del2TATC--22All0
ORF1ab/nsp1630Y30del1taTta-12All0
ORF1ab/nsp1630Y30del1Tat-at12All0
ORF1ab/nsp1630Y30YtaTtaC22AY.1000.000092
ORF1ab/nsp1630Y30YtaTtaC22AY.1130.000285
ORF1ab/nsp1630Y30YtaTtaC22AY.1190.000071
ORF1ab/nsp1630Y30YtaTtaC22AY.200.000078
ORF1ab/nsp1630Y30delTAT---22AY.250.000012
ORF1ab/nsp1630Y30YtaTtaC22AY.260.000057
ORF1ab/nsp1630Y30delTAT---22AY.40.000003
ORF1ab/nsp1630Y30NTatAat22AY.40.000003
ORF1ab/nsp1630Y30delTAT---22AY.4.50.000215
ORF1ab/nsp1630Y30delTAT---22AY.430.000009
ORF1ab/nsp1630Y30YtaTtaC22AY.610.00021
ORF1ab/nsp1630Y30XtaTtaG22B.10.000018
ORF1ab/nsp1630Y30YtaTtaC22B.1.4290.000047
ORF1ab/nsp1630Y30YtaTtaC22B.1.5260.000047
ORF1ab/nsp1630Y30YtaTtaC110.055556
ORF1ab/nsp1630Y30TTATACC11All0
ORF1ab/nsp1630Y30ITATATC11All0
ORF1ab/nsp1630Y30ATAtGCt11All0
ORF1ab/nsp1630Y30YtaTtaC11AY.1020.000027
ORF1ab/nsp1630Y30delTAT---11AY.1130.000142
ORF1ab/nsp1630Y30YtaTtaC11AY.1170.000085
ORF1ab/nsp1630Y30delTAT---11AY.1180.000063
ORF1ab/nsp1630Y30YtaTtaC11AY.1210.000135
ORF1ab/nsp1630Y30YtaTtaC11AY.23.10.000417
ORF1ab/nsp1630Y30YtaTtaC11AY.250.000006
ORF1ab/nsp1630Y30YtaTtaC11AY.290.000016
ORF1ab/nsp1630Y30HTatCat11AY.30.00001
ORF1ab/nsp1630Y30delTAT---11AY.30.00001
ORF1ab/nsp1630Y30CtAttGt11AY.380.000499
ORF1ab/nsp1630Y30YtaTtaC11AY.4.20.000022
ORF1ab/nsp1630Y30delTAT---11AY.420.00004
ORF1ab/nsp1630Y30YtaTtaC11AY.430.000004
ORF1ab/nsp1630Y30ATAtGCt11AY.430.000004
ORF1ab/nsp1630Y30ITATATC11AY.430.000004
ORF1ab/nsp1630Y30StAttCt11AY.430.000004
ORF1ab/nsp1630Y30DTatGat11AY.430.000004
ORF1ab/nsp1630Y30CtAttGt11AY.440.000006
ORF1ab/nsp1630Y30delTAT---11AY.440.000006
ORF1ab/nsp1630Y30XtATtGA11AY.440.000006
ORF1ab/nsp1630Y30YtaTtaC11AY.450.000122
ORF1ab/nsp1630Y30YtaTtaC11AY.46.60.000072
ORF1ab/nsp1630Y30RTAtCGt11AY.46.60.000072
ORF1ab/nsp1630Y30delTAT---11AY.670.000464
ORF1ab/nsp1630Y30YtaTtaC11AY.700.000209
ORF1ab/nsp1630Y30del1taTta-11AY.840.000437
ORF1ab/nsp1630Y30CtAttGt11AY.850.000427
ORF1ab/nsp1630Y30delTAT---11AY.90.000068
ORF1ab/nsp1630Y30YtaTtaC11AY.9.20.000037
ORF1ab/nsp1630Y30NTaTAaC11AY.9.20.000037
ORF1ab/nsp1630Y30TTATACC11AY.9.20.000037
ORF1ab/nsp1630Y30StATtCC11AY.9.20.000037
ORF1ab/nsp1630Y30YtaTtaC11AY.98.10.000048
ORF1ab/nsp1630Y30delTAT---11AY.990.001049
ORF1ab/nsp1630Y30delTAT---11B.10.000009
ORF1ab/nsp1630Y30HTatCat11B.10.000009
ORF1ab/nsp1630Y30CtAttGt11B.1.10.000018
ORF1ab/nsp1630Y30del1Tat-at11B.1.1.1370.0125
ORF1ab/nsp1630Y30YtaTtaC11B.1.1.2140.000055
ORF1ab/nsp1630Y30DTatGat11B.1.1.70.000001
ORF1ab/nsp1630Y30HTatCat11B.1.1.70.000001
ORF1ab/nsp1630Y30XtaTtaA11B.1.1.70.000001
ORF1ab/nsp1630Y30YtaTtaC11B.1.1600.000031
ORF1ab/nsp1630Y30HTatCat11B.1.1770.000013
ORF1ab/nsp1630Y30XtaTtaG11B.1.1770.000013
ORF1ab/nsp1630Y30delTAT---11B.1.177.170.000821
ORF1ab/nsp1630Y30YtaTtaC11B.1.177.330.001645
ORF1ab/nsp1630Y30delTAT---11B.1.177.540.000606
ORF1ab/nsp1630Y30delTAT---11B.1.177.730.000566
ORF1ab/nsp1630Y30YtaTtaC11B.1.177.730.000566
ORF1ab/nsp1630Y30delTAT---11B.1.177.830.001481
ORF1ab/nsp1630Y30HTatCat11B.1.20.000009
ORF1ab/nsp1630Y30delTAT---11B.1.20.000009
ORF1ab/nsp1630Y30NTatAat11B.1.2210.000071
ORF1ab/nsp1630Y30HTatCat11B.1.2340.000132
ORF1ab/nsp1630Y30delTAT---11B.1.2580.000067
ORF1ab/nsp1630Y30delTAT---11B.1.3260.007576
ORF1ab/nsp1630Y30YtaTtaC11B.1.3510.00003
ORF1ab/nsp1630Y30YtaTtaC11B.1.351.20.000303
ORF1ab/nsp1630Y30DTatGat11B.1.36.290.000517
ORF1ab/nsp1630Y30YtaTtaC11B.1.3670.000792
ORF1ab/nsp1630Y30XtaTtaG11B.1.3990.001934
ORF1ab/nsp1630Y30YtaTtaC11B.1.3990.001934
ORF1ab/nsp1630Y30YtaTtaC11B.1.4990.00105
ORF1ab/nsp1630Y30delTAT---11B.1.5250.000113
ORF1ab/nsp1630Y30delTAT---11B.1.5260.000024
ORF1ab/nsp1630Y30YtaTtaC11B.1.5440.006024
ORF1ab/nsp1630Y30delTAT---11B.1.617.30.002985
ORF1ab/nsp1630Y30delTAT---11B.1.6200.000946
ORF1ab/nsp1630Y30StAttCt11B.1.6370.000073
ORF1ab/nsp1630Y30CtAttGt11B.6.80.008264
ORF1ab/nsp1630Y30YtaTtaC11C.60.037037
ORF1ab/nsp1630Y30XtaTtaG11D.20.000075
ORF1ab/nsp1630Y30delTAT---11P.1.10.000318
ORF1ab/nsp1630Y30delTAT---11P.1.150.000232
ORF1ab/nsp1630Y30delTAT---11Q.20.000613