CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 290

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16290I290VI7088VnonsynAttGtt870870121526-21528
ORF1ab/nsp16290I290TI7088TnonsynaTtaCt143143121526-21528
ORF1ab/nsp16290I290II7088IsynatTatC1221180.96721321526-21528
ORF1ab/nsp16290I290II7088IsynatTatA12240.032786921526-21528
ORF1ab/nsp16290I290delI7088deldelATT---6666121526-21528
ORF1ab/nsp16290I290LI7088LnonsynAttCtt51470.92156921526-21528
ORF1ab/nsp16290I290LI7088LnonsynAtTCtC5130.058823521526-21528
ORF1ab/nsp16290I290LI7088LnonsynAtTCtA5110.019607821526-21528
ORF1ab/nsp16290I290SI7088SnonsynaTtaGt17140.82352921526-21528
ORF1ab/nsp16290I290SI7088SnonsynATtTCt1730.17647121526-21528
ORF1ab/nsp16290I290del1I7088del1delaTta-t16110.687521526-21528
ORF1ab/nsp16290I290del1I7088del1delAtt-tt1630.187521526-21528
ORF1ab/nsp16290I290del1I7088del1delATT-NN1610.062521526-21528
ORF1ab/nsp16290I290del1I7088del1delaTTa-N1610.062521526-21528
ORF1ab/nsp16290I290MI7088MnonsynatTatG55121526-21528
ORF1ab/nsp16290I290FI7088FnonsynAttTtt44121526-21528
ORF1ab/nsp16290I290NI7088NnonsynaTtaAt22121526-21528
ORF1ab/nsp16290I290del2I7088del2delaTTa--11121526-21528
ORF1ab/nsp16290I290YI7088YnonsynATtTAt11121526-21528
ORF1ab/nsp16290I290RI7088RnonsynaTTaGA11121526-21528

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16290I290VAttGtt870870All0.000166
ORF1ab/nsp16290I290VAttGtt181181AY.40.000282
ORF1ab/nsp16290I290VAttGtt179179B.1.1.70.00016
ORF1ab/nsp16290I290TaTtaCt143143All0.000027
ORF1ab/nsp16290I290IatTatC118122All0.000023
ORF1ab/nsp16290I290IatTatA4122All0.000001
ORF1ab/nsp16290I290VAttGtt9292B.1.3510.002735
ORF1ab/nsp16290I290delATT---6666All0.000013
ORF1ab/nsp16290I290LAttCtt4751All0.000009
ORF1ab/nsp16290I290LAtTCtC351All0.000001
ORF1ab/nsp16290I290LAtTCtA151All0
ORF1ab/nsp16290I290TaTtaCt3939AY.420.001569
ORF1ab/nsp16290I290VAttGtt3939B.1.5960.003398
ORF1ab/nsp16290I290LAttCtt3737AY.40.000058
ORF1ab/nsp16290I290VAttGtt3737B.1.20.000326
ORF1ab/nsp16290I290IatTatC3333B.1.1.70.00003
ORF1ab/nsp16290I290VAttGtt3030AY.260.000849
ORF1ab/nsp16290I290TaTtaCt2626AY.40.00004
ORF1ab/nsp16290I290VAttGtt2525AY.4.20.000542
ORF1ab/nsp16290I290TaTtaCt2323B.1.1.70.000021
ORF1ab/nsp16290I290VAttGtt2222B.1.617.20.000083
ORF1ab/nsp16290I290VAttGtt2020AY.1030.000124
ORF1ab/nsp16290I290VAttGtt2020B.1.1.2220.00408
ORF1ab/nsp16290I290VAttGtt1818AY.90.001217
ORF1ab/nsp16290I290SaTtaGt1417All0.000003
ORF1ab/nsp16290I290SATtTCt317All0.000001
ORF1ab/nsp16290I290del1aTta-t1116All0.000002
ORF1ab/nsp16290I290del1Att-tt316All0.000001
ORF1ab/nsp16290I290del1ATT-NN116All0
ORF1ab/nsp16290I290del1aTTa-N116All0
ORF1ab/nsp16290I290IatTatC1516AY.420.000603
ORF1ab/nsp16290I290IatTatA116AY.420.00004
ORF1ab/nsp16290I290VAttGtt1515B.1.5260.000353
ORF1ab/nsp16290I290TaTtaCt1111B.1.20.000097
ORF1ab/nsp16290I290VAttGtt1010AY.430.000044
ORF1ab/nsp16290I290VAttGtt1010B.10.000092
ORF1ab/nsp16290I290VAttGtt1010B.1.1770.000132
ORF1ab/nsp16290I290VAttGtt1010B.1.2580.000665
ORF1ab/nsp16290I290VAttGtt88AY.360.001186
ORF1ab/nsp16290I290SaTtaGt88AY.40.000012
ORF1ab/nsp16290I290VAttGtt88B.1.466.20.00313
ORF1ab/nsp16290I290VAttGtt88P.10.000126
ORF1ab/nsp16290I290IatTatC77AY.1030.000043
ORF1ab/nsp16290I290VAttGtt77AY.390.000173
ORF1ab/nsp16290I290VAttGtt77B.1.1.4141
ORF1ab/nsp16290I290IatTatC77B.1.1600.000218
ORF1ab/nsp16290I290IatTatC66AY.430.000027
ORF1ab/nsp16290I290IatTatC66AY.750.000336
ORF1ab/nsp16290I290TaTtaCt66B.1.177.820.002864
ORF1ab/nsp16290I290VAttGtt66P.1.140.000287
ORF1ab/nsp16290I290MatTatG55All0.000001
ORF1ab/nsp16290I290VAttGtt55AY.250.00003
ORF1ab/nsp16290I290delATT---55AY.330.000334
ORF1ab/nsp16290I290VAttGtt55AY.98.10.000242
ORF1ab/nsp16290I290delATT---55B.10.000046
ORF1ab/nsp16290I290IatTatC55B.10.000046
ORF1ab/nsp16290I290TaTtaCt55B.1.10.000091
ORF1ab/nsp16290I290VAttGtt55B.1.1.3690.002231
ORF1ab/nsp16290I290delATT---55P.10.000079
ORF1ab/nsp16290I290FAttTtt44All0.000001
ORF1ab/nsp16290I290VAttGtt44AY.290.000063
ORF1ab/nsp16290I290TaTtaCt44AY.30.00004
ORF1ab/nsp16290I290TaTtaCt44AY.360.000593
ORF1ab/nsp16290I290VAttGtt44AY.440.000024
ORF1ab/nsp16290I290VAttGtt44AY.460.000416
ORF1ab/nsp16290I290VAttGtt44AY.470.000124
ORF1ab/nsp16290I290delATT---44B.1.10.000073
ORF1ab/nsp16290I290LAttCtt34B.1.1.70.000003
ORF1ab/nsp16290I290LAtTCtC14B.1.1.70.000001
ORF1ab/nsp16290I290VAttGtt44B.1.2430.000278
ORF1ab/nsp16290I290IatTatC44B.1.360.000584
ORF1ab/nsp16290I290delATT---44B.1.5250.000453
ORF1ab/nsp16290I290delATT---44B.1.617.20.000015
ORF1ab/nsp16290I290del1aTta-t44P.10.000063
ORF1ab/nsp16290I290delATT---33AY.430.000013
ORF1ab/nsp16290I290VAttGtt33AY.99.20.000276
ORF1ab/nsp16290I290VAttGtt33B.1.10.000054
ORF1ab/nsp16290I290IatTatC33B.1.10.000054
ORF1ab/nsp16290I290del1Att-tt23B.1.1.70.000002
ORF1ab/nsp16290I290del1aTta-t13B.1.1.70.000001
ORF1ab/nsp16290I290VAttGtt33B.1.1600.000094
ORF1ab/nsp16290I290delATT---33B.1.1770.00004
ORF1ab/nsp16290I290VAttGtt33B.1.177.450.001144
ORF1ab/nsp16290I290delATT---33B.1.20.000026
ORF1ab/nsp16290I290VAttGtt33B.1.4290.000071
ORF1ab/nsp16290I290TaTtaCt33B.1.5610.001191
ORF1ab/nsp16290I290VAttGtt33B.1.617.10.000387
ORF1ab/nsp16290I290IatTatC33B.1.617.20.000011
ORF1ab/nsp16290I290VAttGtt33C.370.000348
ORF1ab/nsp16290I290IatTatC220.111111
ORF1ab/nsp16290I290SATtTCt220.111111
ORF1ab/nsp16290I290NaTtaAt22All0
ORF1ab/nsp16290I290VAttGtt22AY.1000.000092
ORF1ab/nsp16290I290VAttGtt22AY.16.10.00094
ORF1ab/nsp16290I290IatTatC22AY.230.000139
ORF1ab/nsp16290I290delATT---22AY.250.000012
ORF1ab/nsp16290I290VAttGtt22AY.330.000134
ORF1ab/nsp16290I290TaTtaCt22AY.430.000009
ORF1ab/nsp16290I290delATT---22AY.440.000012
ORF1ab/nsp16290I290VAttGtt22AY.46.60.000144
ORF1ab/nsp16290I290VAttGtt22AY.520.001629
ORF1ab/nsp16290I290TaTtaCt22AY.540.000191
ORF1ab/nsp16290I290VAttGtt22AY.610.00021
ORF1ab/nsp16290I290VAttGtt22AY.980.000158
ORF1ab/nsp16290I290LAtTCtC22B.10.000018
ORF1ab/nsp16290I290TaTtaCt22B.10.000018
ORF1ab/nsp16290I290del1aTta-t22B.10.000018
ORF1ab/nsp16290I290IatTatC22B.1.1.2940.002532
ORF1ab/nsp16290I290SaTtaGt22B.1.1.70.000002
ORF1ab/nsp16290I290delATT---22B.1.1.70.000002
ORF1ab/nsp16290I290IatTatC22B.1.20.000018
ORF1ab/nsp16290I290IatTatC22B.1.3510.000059
ORF1ab/nsp16290I290delATT---22B.1.5170.000854
ORF1ab/nsp16290I290IatTatC22B.1.5250.000226
ORF1ab/nsp16290I290TaTtaCt22B.1.617.20.000008
ORF1ab/nsp16290I290VAttGtt22C.140.008658
ORF1ab/nsp16290I290del1aTta-t12P.20.000187
ORF1ab/nsp16290I290del1ATT-NN12P.20.000187
ORF1ab/nsp16290I290IatTatC22S.10.009901
ORF1ab/nsp16290I290FAttTtt110.055556
ORF1ab/nsp16290I290NaTtaAt110.055556
ORF1ab/nsp16290I290YATtTAt110.055556
ORF1ab/nsp16290I290VAttGtt11A0.000387
ORF1ab/nsp16290I290delATT---11A.2.40.003367
ORF1ab/nsp16290I290RaTTaGA11All0
ORF1ab/nsp16290I290del2aTTa--11All0
ORF1ab/nsp16290I290YATtTAt11All0
ORF1ab/nsp16290I290VAttGtt11AY.10.000396
ORF1ab/nsp16290I290VAttGtt11AY.100.00053
ORF1ab/nsp16290I290delATT---11AY.1000.000046
ORF1ab/nsp16290I290del1aTta-t11AY.1000.000046
ORF1ab/nsp16290I290LAtTCtA11AY.1020.000027
ORF1ab/nsp16290I290VAttGtt11AY.1180.000063
ORF1ab/nsp16290I290LAttCtt11AY.130.000161
ORF1ab/nsp16290I290VAttGtt11AY.160.00038
ORF1ab/nsp16290I290TaTtaCt11AY.200.000039
ORF1ab/nsp16290I290TaTtaCt11AY.230.00007
ORF1ab/nsp16290I290VAttGtt11AY.230.00007
ORF1ab/nsp16290I290TaTtaCt11AY.250.000006
ORF1ab/nsp16290I290IatTatC11AY.250.000006
ORF1ab/nsp16290I290IatTatC11AY.280.00189
ORF1ab/nsp16290I290VAttGtt11AY.30.00001
ORF1ab/nsp16290I290SaTtaGt11AY.30.00001
ORF1ab/nsp16290I290VAttGtt11AY.340.000097
ORF1ab/nsp16290I290del1Att-tt11AY.390.000025
ORF1ab/nsp16290I290delATT---11AY.390.000025
ORF1ab/nsp16290I290MatTatG11AY.40.000002
ORF1ab/nsp16290I290IatTatA11AY.40.000002
ORF1ab/nsp16290I290TaTtaCt11AY.4.2.10.000149
ORF1ab/nsp16290I290delATT---11AY.4.30.000842
ORF1ab/nsp16290I290delATT---11AY.4.50.000107
ORF1ab/nsp16290I290TaTtaCt11AY.400.000964
ORF1ab/nsp16290I290delATT---11AY.420.00004
ORF1ab/nsp16290I290FAttTtt11AY.420.00004
ORF1ab/nsp16290I290SATtTCt11AY.430.000004
ORF1ab/nsp16290I290IatTatC11AY.440.000006
ORF1ab/nsp16290I290SaTtaGt11AY.440.000006
ORF1ab/nsp16290I290VAttGtt11AY.450.000122
ORF1ab/nsp16290I290TaTtaCt11AY.5.30.000337
ORF1ab/nsp16290I290delATT---11AY.540.000095
ORF1ab/nsp16290I290VAttGtt11AY.60.000041
ORF1ab/nsp16290I290delATT---11AY.680.000274
ORF1ab/nsp16290I290TaTtaCt11AY.7.10.000113
ORF1ab/nsp16290I290IatTatC11AY.720.001361
ORF1ab/nsp16290I290VAttGtt11AY.740.000116
ORF1ab/nsp16290I290VAttGtt11AY.750.000056
ORF1ab/nsp16290I290VAttGtt11AY.850.000427
ORF1ab/nsp16290I290TaTtaCt11AY.860.00083
ORF1ab/nsp16290I290MatTatG11AY.90.000068
ORF1ab/nsp16290I290VAttGtt11AY.930.000273
ORF1ab/nsp16290I290IatTatC11AY.98.10.000048
ORF1ab/nsp16290I290IatTatA11AY.990.001049
ORF1ab/nsp16290I290VAttGtt11AZ.10.000867
ORF1ab/nsp16290I290IatTatC11B0.000128
ORF1ab/nsp16290I290MatTatG11B.10.000009
ORF1ab/nsp16290I290SaTtaGt11B.10.000009
ORF1ab/nsp16290I290RaTTaGA11B.1.10.000018
ORF1ab/nsp16290I290VAttGtt11B.1.1.2070.001182
ORF1ab/nsp16290I290TaTtaCt11B.1.1.2140.000055
ORF1ab/nsp16290I290FAttTtt11B.1.1.2220.000204
ORF1ab/nsp16290I290del2aTTa--11B.1.1.2220.000204
ORF1ab/nsp16290I290VAttGtt11B.1.1.2770.000759
ORF1ab/nsp16290I290VAttGtt11B.1.1.3110.000358
ORF1ab/nsp16290I290delATT---11B.1.1.3150.008475
ORF1ab/nsp16290I290IatTatC11B.1.1.3180.000302
ORF1ab/nsp16290I290VAttGtt11B.1.1.3180.000302
ORF1ab/nsp16290I290VAttGtt11B.1.1.3510.002793
ORF1ab/nsp16290I290delATT---11B.1.1.4090.002833
ORF1ab/nsp16290I290IatTatC11B.1.1.4190.007407
ORF1ab/nsp16290I290delATT---11B.1.1.460.004367
ORF1ab/nsp16290I290VAttGtt11B.1.1.5170.006803
ORF1ab/nsp16290I290VAttGtt11B.1.1.5190.00004
ORF1ab/nsp16290I290NaTtaAt11B.1.1.70.000001
ORF1ab/nsp16290I290MatTatG11B.1.1.700.000341
ORF1ab/nsp16290I290del1aTta-t11B.1.1600.000031
ORF1ab/nsp16290I290IatTatC11B.1.160.160.000929
ORF1ab/nsp16290I290VAttGtt11B.1.177.40.000211
ORF1ab/nsp16290I290VAttGtt11B.1.177.620.001192
ORF1ab/nsp16290I290delATT---11B.1.177.680.015152
ORF1ab/nsp16290I290delATT---11B.1.177.830.001481
ORF1ab/nsp16290I290del1aTta-t11B.1.20.000009
ORF1ab/nsp16290I290IatTatC11B.1.2100.002132
ORF1ab/nsp16290I290LAttCtt11B.1.2430.00007
ORF1ab/nsp16290I290delATT---11B.1.2580.000067
ORF1ab/nsp16290I290TaTtaCt11B.1.2580.000067
ORF1ab/nsp16290I290delATT---11B.1.2600.003344
ORF1ab/nsp16290I290VAttGtt11B.1.3110.000275
ORF1ab/nsp16290I290TaTtaCt11B.1.3370.005587
ORF1ab/nsp16290I290LAttCtt11B.1.36.160.001425
ORF1ab/nsp16290I290VAttGtt11B.1.36.360.000602
ORF1ab/nsp16290I290VAttGtt11B.1.4000.000429
ORF1ab/nsp16290I290delATT---11B.1.4150.014286
ORF1ab/nsp16290I290delATT---11B.1.416.10.001563
ORF1ab/nsp16290I290delATT---11B.1.4270.00005
ORF1ab/nsp16290I290VAttGtt11B.1.4270.00005
ORF1ab/nsp16290I290IatTatC11B.1.4290.000024
ORF1ab/nsp16290I290FAttTtt11B.1.4530.003236
ORF1ab/nsp16290I290TaTtaCt11B.1.4560.003268
ORF1ab/nsp16290I290IatTatA11B.1.4970.000315
ORF1ab/nsp16290I290VAttGtt11B.1.4970.000315
ORF1ab/nsp16290I290VAttGtt11B.1.5250.000113
ORF1ab/nsp16290I290IatTatC11B.1.5260.000024
ORF1ab/nsp16290I290IatTatC11B.1.5960.000087
ORF1ab/nsp16290I290MatTatG11B.1.5960.000087
ORF1ab/nsp16290I290LAttCtt11B.1.617.20.000004
ORF1ab/nsp16290I290delATT---11B.1.6200.000946
ORF1ab/nsp16290I290IatTatC11B.1.6270.00202
ORF1ab/nsp16290I290LAttCtt11B.1.6310.003367
ORF1ab/nsp16290I290VAttGtt11B.1.6370.000073
ORF1ab/nsp16290I290delATT---11B.340.013699
ORF1ab/nsp16290I290VAttGtt11C.320.023256
ORF1ab/nsp16290I290TaTtaCt11C.350.000774
ORF1ab/nsp16290I290VAttGtt11D.20.000075
ORF1ab/nsp16290I290VAttGtt11K.30.006173
ORF1ab/nsp16290I290LAttCtt11P.10.000016
ORF1ab/nsp16290I290delATT---11P.1.10.000318
ORF1ab/nsp16290I290SaTtaGt11P.1.100.000269
ORF1ab/nsp16290I290IatTatC11P.1.150.000232
ORF1ab/nsp16290I290delATT---11P.1.150.000232
ORF1ab/nsp16290I290del1aTTa-N11P.1.70.000319
ORF1ab/nsp16290I290VAttGtt11Q.10.000126
ORF1ab/nsp16290I290TaTtaCt11Q.30.000145
ORF1ab/nsp16290I290LAttCtt11Q.80.000165
ORF1ab/nsp16290I290VAttGtt11W.30.005263