CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 287 | R287I | R7085I | nonsyn | aGa | aTa | 19530 | 19529 | 0.999949 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287I | R7085I | nonsyn | aGA | aTC | 19530 | 1 | 0.0000512033 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287R | R7085R | syn | agA | agG | 237 | 231 | 0.974684 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287R | R7085R | syn | Aga | Cga | 237 | 6 | 0.0253165 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287K | R7085K | nonsyn | aGa | aAa | 184 | 183 | 0.994565 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287K | R7085K | nonsyn | aGA | aAG | 184 | 1 | 0.00543478 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287S | R7085S | nonsyn | agA | agC | 125 | 88 | 0.704 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287S | R7085S | nonsyn | agA | agT | 125 | 37 | 0.296 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287del | R7085del | del | AGA | --- | 62 | 62 | 1 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287Q | R7085Q | nonsyn | AGa | CAa | 61 | 61 | 1 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287T | R7085T | nonsyn | aGa | aCa | 43 | 39 | 0.906977 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287T | R7085T | nonsyn | aGA | aCC | 43 | 4 | 0.0930233 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287G | R7085G | nonsyn | Aga | Gga | 33 | 33 | 1 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287X | R7085X | nonsyn | Aga | Tga | 16 | 14 | 0.875 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287X | R7085X | nonsyn | AGA | TAG | 16 | 1 | 0.0625 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287X | R7085X | nonsyn | AGa | TAa | 16 | 1 | 0.0625 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287N | R7085N | nonsyn | aGA | aAC | 4 | 4 | 1 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287L | R7085L | nonsyn | AGa | TTa | 3 | 2 | 0.666667 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287L | R7085L | nonsyn | AGA | TTG | 3 | 1 | 0.333333 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287E | R7085E | nonsyn | AGa | GAa | 2 | 2 | 1 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287P | R7085P | nonsyn | AGa | CCa | 2 | 2 | 1 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287del1 | R7085del1 | del | Aga | -ga | 2 | 1 | 0.5 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287del1 | R7085del1 | del | AGA | -NN | 2 | 1 | 0.5 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287M | R7085M | nonsyn | aGA | aTG | 1 | 1 | 1 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287W | R7085W | nonsyn | AgA | TgG | 1 | 1 | 1 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287F | R7085F | nonsyn | AGA | TTC | 1 | 1 | 1 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287Y | R7085Y | nonsyn | AGA | TAC | 1 | 1 | 1 | 21517-21519 |
ORF1ab/nsp16 | 287 | R287C | R7085C | nonsyn | AgA | TgC | 1 | 1 | 1 | 21517-21519 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 19529 | 19530 | All | 0.003735 |
ORF1ab/nsp16 | 287 | R287I | aGA | aTC | 1 | 19530 | All | 0 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 18032 | 18032 | B.1.1.214 | 1 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 445 | 445 | B.1.1 | 0.008073 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 241 | 241 | AY.44 | 0.001467 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 231 | 237 | All | 0.000044 |
ORF1ab/nsp16 | 287 | R287R | Aga | Cga | 6 | 237 | All | 0.000001 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 183 | 184 | All | 0.000035 |
ORF1ab/nsp16 | 287 | R287K | aGA | aAG | 1 | 184 | All | 0 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 182 | 182 | AY.34 | 0.017648 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 158 | 158 | AY.4 | 0.000246 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 135 | 135 | B.1.1.7 | 0.000121 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 88 | 125 | All | 0.000017 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 37 | 125 | All | 0.000007 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 64 | 72 | B.1.1.7 | 0.000057 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 8 | 72 | B.1.1.7 | 0.000007 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 62 | 62 | All | 0.000012 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 61 | 61 | All | 0.000012 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 59 | 59 | B.1.619 | 0.051394 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 45 | 45 | B.1.177 | 0.000593 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 39 | 43 | All | 0.000007 |
ORF1ab/nsp16 | 287 | R287T | aGA | aCC | 4 | 43 | All | 0.000001 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 43 | 43 | B.1 | 0.000394 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 42 | 42 | AY.13 | 0.006761 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 33 | 33 | All | 0.000006 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 21 | 21 | B.1.1.45 | 0.295775 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 18 | 18 | AY.3.1 | 0.001535 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 17 | 17 | AY.4.5 | 0.001827 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 14 | 16 | All | 0.000003 |
ORF1ab/nsp16 | 287 | R287X | AGA | TAG | 1 | 16 | All | 0 |
ORF1ab/nsp16 | 287 | R287X | AGa | TAa | 1 | 16 | All | 0 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 14 | 14 | B.1.580 | 0.056911 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 13 | 13 | AY.119 | 0.000459 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 10 | 10 | B.1.177.43 | 0.014771 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 9 | 9 | B.1.1.374 | 0.021378 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 9 | 9 | B.1.1.56 | 0.160714 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 7 | 8 | AY.4 | 0.000011 |
ORF1ab/nsp16 | 287 | R287R | Aga | Cga | 1 | 8 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 8 | 8 | B.1.1.525 | 0.043716 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 8 | 8 | P.1.17 | 0.001294 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 7 | 7 | B.1.1.176 | 0.003076 |
ORF1ab/nsp16 | 287 | R287T | aGA | aCC | 4 | 6 | 0.222222 | |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 2 | 6 | 0.111111 | |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 6 | 6 | B.1.362 | 0.009245 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp16 | 287 | R287R | Aga | Cga | 3 | 5 | AY.3 | 0.00003 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 2 | 5 | AY.3 | 0.00002 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 3 | 5 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 2 | 5 | AY.4 | 0.000003 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 5 | 5 | B.1.1.67 | 0.022831 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 4 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 287 | R287R | Aga | Cga | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 5 | 5 | B.1.623 | 0.002682 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp16 | 287 | R287N | aGA | aAC | 4 | 4 | All | 0.000001 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 3 | 4 | AY.3 | 0.00003 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 1 | 4 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 3 | 4 | B.1.617.2 | 0.000011 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 4 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 2 | 3 | 0.111111 | |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 1 | 3 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287X | AGa | TAa | 1 | 3 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287X | AGA | TAG | 1 | 3 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287K | aGA | aAG | 1 | 3 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287L | AGa | TTa | 2 | 3 | All | 0 |
ORF1ab/nsp16 | 287 | R287L | AGA | TTG | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 3 | 3 | AY.79 | 0.003632 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 3 | 3 | B.1.1.134 | 0.034091 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp16 | 287 | R287P | AGa | CCa | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 287 | R287L | AGA | TTG | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287R | Aga | Cga | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287L | AGa | TTa | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287I | aGA | aTC | 1 | 2 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287P | AGa | CCa | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 287 | R287E | AGa | GAa | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 287 | R287del1 | AGA | -NN | 1 | 2 | All | 0 |
ORF1ab/nsp16 | 287 | R287del1 | Aga | -ga | 1 | 2 | All | 0 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 2 | 2 | AY.17 | 0.016393 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp16 | 287 | R287C | AgA | TgC | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287F | AGA | TTC | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287W | AgA | TgG | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287M | aGA | aTG | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287Y | AGA | TAC | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287N | aGA | aAC | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp16 | 287 | R287C | AgA | TgC | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 287 | R287M | aGA | aTG | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 287 | R287F | AGA | TTC | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 287 | R287W | AgA | TgG | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 287 | R287Y | AGA | TAC | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 287 | R287del1 | AGA | -NN | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 287 | R287N | aGA | aAC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 287 | R287E | AGa | GAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 287 | R287E | AGa | GAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 287 | R287N | aGA | aAC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp16 | 287 | R287N | aGA | aAC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp16 | 287 | R287L | AGa | TTa | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp16 | 287 | R287S | agA | agC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 287 | R287Q | AGa | CAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 287 | R287del1 | Aga | -ga | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp16 | 287 | R287T | aGa | aCa | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 287 | R287G | Aga | Gga | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 287 | R287S | agA | agT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | K.3 | 0.006173 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp16 | 287 | R287K | aGa | aAa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 287 | R287X | Aga | Tga | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp16 | 287 | R287del | AGA | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp16 | 287 | R287R | agA | agG | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp16 | 287 | R287I | aGa | aTa | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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