CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 277 | K277N | K7075N | nonsyn | aaA | aaC | 255 | 203 | 0.796078 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277N | K7075N | nonsyn | aaA | aaT | 255 | 52 | 0.203922 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277K | K7075K | syn | aaA | aaG | 240 | 240 | 1 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277R | K7075R | nonsyn | aAa | aGa | 190 | 190 | 1 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277del | K7075del | del | AAA | --- | 76 | 76 | 1 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277Q | K7075Q | nonsyn | Aaa | Caa | 30 | 29 | 0.966667 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277Q | K7075Q | nonsyn | AaA | CaG | 30 | 1 | 0.0333333 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277T | K7075T | nonsyn | aAa | aCa | 18 | 18 | 1 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277del1 | K7075del1 | del | Aaa | -aa | 13 | 11 | 0.846154 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277del1 | K7075del1 | del | AaA | -aT | 13 | 1 | 0.0769231 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277del1 | K7075del1 | del | AaA | -aG | 13 | 1 | 0.0769231 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277E | K7075E | nonsyn | Aaa | Gaa | 11 | 11 | 1 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277X | K7075X | nonsyn | Aaa | Taa | 10 | 10 | 1 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277I | K7075I | nonsyn | aAa | aTa | 9 | 9 | 1 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277S | K7075S | nonsyn | AAA | TCC | 4 | 2 | 0.5 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277S | K7075S | nonsyn | AAa | TCa | 4 | 2 | 0.5 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277A | K7075A | nonsyn | AAA | GCC | 4 | 2 | 0.5 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277A | K7075A | nonsyn | AAa | GCa | 4 | 2 | 0.5 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277D | K7075D | nonsyn | AaA | GaC | 2 | 2 | 1 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277Y | K7075Y | nonsyn | AaA | TaC | 2 | 2 | 1 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277L | K7075L | nonsyn | AAa | TTa | 1 | 1 | 1 | 21487-21489 |
ORF1ab/nsp16 | 277 | K277V | K7075V | nonsyn | AAa | GTa | 1 | 1 | 1 | 21487-21489 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 203 | 255 | All | 0.000039 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 52 | 255 | All | 0.00001 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 240 | 240 | All | 0.000046 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 190 | 190 | All | 0.000036 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 147 | 148 | AY.43 | 0.000651 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 1 | 148 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 85 | 85 | B.1.617.2 | 0.00032 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 76 | 76 | All | 0.000015 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 64 | 64 | B.1.1.7 | 0.000057 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 55 | 55 | AY.100 | 0.00253 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 41 | 41 | B.1.616 | 1 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 40 | 40 | AY.4 | 0.000062 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 29 | 30 | All | 0.000006 |
ORF1ab/nsp16 | 277 | K277Q | AaA | CaG | 1 | 30 | All | 0 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 23 | 23 | B.1.1.222 | 0.004692 |
ORF1ab/nsp16 | 277 | K277T | aAa | aCa | 18 | 18 | All | 0.000003 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 16 | 16 | AY.9.1 | 0.00134 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp16 | 277 | K277del1 | Aaa | -aa | 11 | 13 | All | 0.000002 |
ORF1ab/nsp16 | 277 | K277del1 | AaA | -aT | 1 | 13 | All | 0 |
ORF1ab/nsp16 | 277 | K277del1 | AaA | -aG | 1 | 13 | All | 0 |
ORF1ab/nsp16 | 277 | K277E | Aaa | Gaa | 11 | 11 | All | 0.000002 |
ORF1ab/nsp16 | 277 | K277X | Aaa | Taa | 10 | 10 | All | 0.000002 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp16 | 277 | K277I | aAa | aTa | 9 | 9 | All | 0.000002 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp16 | 277 | K277T | aAa | aCa | 8 | 8 | B.1.1.33 | 0.003367 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 5 | 7 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 2 | 7 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 7 | 7 | B.1.466.1 | 0.05036 |
ORF1ab/nsp16 | 277 | K277I | aAa | aTa | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 5 | 5 | AY.101 | 0.002452 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp16 | 277 | K277A | AAA | GCC | 2 | 4 | 0.111111 | |
ORF1ab/nsp16 | 277 | K277A | AAa | GCa | 2 | 4 | 0.111111 | |
ORF1ab/nsp16 | 277 | K277S | AAA | TCC | 2 | 4 | 0.111111 | |
ORF1ab/nsp16 | 277 | K277S | AAa | TCa | 2 | 4 | 0.111111 | |
ORF1ab/nsp16 | 277 | K277S | AAa | TCa | 2 | 4 | All | 0 |
ORF1ab/nsp16 | 277 | K277A | AAA | GCC | 2 | 4 | All | 0 |
ORF1ab/nsp16 | 277 | K277A | AAa | GCa | 2 | 4 | All | 0 |
ORF1ab/nsp16 | 277 | K277S | AAA | TCC | 2 | 4 | All | 0 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 277 | K277X | Aaa | Taa | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp16 | 277 | K277X | Aaa | Taa | 3 | 3 | 0.166667 | |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 277 | K277T | aAa | aCa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp16 | 277 | K277del1 | Aaa | -aa | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 277 | K277Q | AaA | CaG | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 277 | K277del1 | AaA | -aT | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp16 | 277 | K277del1 | Aaa | -aa | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 277 | K277E | Aaa | Gaa | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 277 | K277D | AaA | GaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 277 | K277Y | AaA | TaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 2 | 2 | A.2.2 | 0.003378 |
ORF1ab/nsp16 | 277 | K277D | AaA | GaC | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 277 | K277Y | AaA | TaC | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp16 | 277 | K277E | Aaa | Gaa | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp16 | 277 | K277T | aAa | aCa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 277 | K277del1 | Aaa | -aa | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp16 | 277 | K277del1 | AaA | -aG | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp16 | 277 | K277del1 | Aaa | -aa | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 277 | K277T | aAa | aCa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp16 | 277 | K277E | Aaa | Gaa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp16 | 277 | K277L | AAa | TTa | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 277 | K277V | AAa | GTa | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 277 | K277I | aAa | aTa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 277 | K277T | aAa | aCa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp16 | 277 | K277T | aAa | aCa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 277 | K277E | Aaa | Gaa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 277 | K277E | Aaa | Gaa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 277 | K277X | Aaa | Taa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 277 | K277del1 | Aaa | -aa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 277 | K277E | Aaa | Gaa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 277 | K277X | Aaa | Taa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 277 | K277E | Aaa | Gaa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 277 | K277I | aAa | aTa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 277 | K277X | Aaa | Taa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 277 | K277L | AAa | TTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp16 | 277 | K277T | aAa | aCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp16 | 277 | K277E | Aaa | Gaa | 1 | 1 | B.1.291 | 0.019231 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp16 | 277 | K277V | AAa | GTa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp16 | 277 | K277E | Aaa | Gaa | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 277 | K277I | aAa | aTa | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 277 | K277del1 | Aaa | -aa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 277 | K277K | aaA | aaG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp16 | 277 | K277N | aaA | aaT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp16 | 277 | K277Q | Aaa | Caa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 277 | K277R | aAa | aGa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp16 | 277 | K277del1 | Aaa | -aa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp16 | 277 | K277del | AAA | --- | 1 | 1 | P.1.15 | 0.000232 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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