CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 277

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16277K277NK7075NnonsynaaAaaC2552030.79607821487-21489
ORF1ab/nsp16277K277NK7075NnonsynaaAaaT255520.20392221487-21489
ORF1ab/nsp16277K277KK7075KsynaaAaaG240240121487-21489
ORF1ab/nsp16277K277RK7075RnonsynaAaaGa190190121487-21489
ORF1ab/nsp16277K277delK7075deldelAAA---7676121487-21489
ORF1ab/nsp16277K277QK7075QnonsynAaaCaa30290.96666721487-21489
ORF1ab/nsp16277K277QK7075QnonsynAaACaG3010.033333321487-21489
ORF1ab/nsp16277K277TK7075TnonsynaAaaCa1818121487-21489
ORF1ab/nsp16277K277del1K7075del1delAaa-aa13110.84615421487-21489
ORF1ab/nsp16277K277del1K7075del1delAaA-aT1310.076923121487-21489
ORF1ab/nsp16277K277del1K7075del1delAaA-aG1310.076923121487-21489
ORF1ab/nsp16277K277EK7075EnonsynAaaGaa1111121487-21489
ORF1ab/nsp16277K277XK7075XnonsynAaaTaa1010121487-21489
ORF1ab/nsp16277K277IK7075InonsynaAaaTa99121487-21489
ORF1ab/nsp16277K277SK7075SnonsynAAATCC420.521487-21489
ORF1ab/nsp16277K277SK7075SnonsynAAaTCa420.521487-21489
ORF1ab/nsp16277K277AK7075AnonsynAAAGCC420.521487-21489
ORF1ab/nsp16277K277AK7075AnonsynAAaGCa420.521487-21489
ORF1ab/nsp16277K277DK7075DnonsynAaAGaC22121487-21489
ORF1ab/nsp16277K277YK7075YnonsynAaATaC22121487-21489
ORF1ab/nsp16277K277LK7075LnonsynAAaTTa11121487-21489
ORF1ab/nsp16277K277VK7075VnonsynAAaGTa11121487-21489

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16277K277NaaAaaC203255All0.000039
ORF1ab/nsp16277K277NaaAaaT52255All0.00001
ORF1ab/nsp16277K277KaaAaaG240240All0.000046
ORF1ab/nsp16277K277RaAaaGa190190All0.000036
ORF1ab/nsp16277K277NaaAaaC147148AY.430.000651
ORF1ab/nsp16277K277NaaAaaT1148AY.430.000004
ORF1ab/nsp16277K277KaaAaaG8585B.1.617.20.00032
ORF1ab/nsp16277K277delAAA---7676All0.000015
ORF1ab/nsp16277K277RaAaaGa6464B.1.1.70.000057
ORF1ab/nsp16277K277KaaAaaG5555AY.1000.00253
ORF1ab/nsp16277K277RaAaaGa4141B.1.6161
ORF1ab/nsp16277K277NaaAaaT4040AY.40.000062
ORF1ab/nsp16277K277QAaaCaa2930All0.000006
ORF1ab/nsp16277K277QAaACaG130All0
ORF1ab/nsp16277K277KaaAaaG2323B.1.1.2220.004692
ORF1ab/nsp16277K277TaAaaCa1818All0.000003
ORF1ab/nsp16277K277NaaAaaC1616AY.9.10.00134
ORF1ab/nsp16277K277QAaaCaa1616B.1.4290.000376
ORF1ab/nsp16277K277NaaAaaC1414B.1.2430.000974
ORF1ab/nsp16277K277del1Aaa-aa1113All0.000002
ORF1ab/nsp16277K277del1AaA-aT113All0
ORF1ab/nsp16277K277del1AaA-aG113All0
ORF1ab/nsp16277K277EAaaGaa1111All0.000002
ORF1ab/nsp16277K277XAaaTaa1010All0.000002
ORF1ab/nsp16277K277RaAaaGa1010AY.40.000016
ORF1ab/nsp16277K277IaAaaTa99All0.000002
ORF1ab/nsp16277K277KaaAaaG99AY.430.00004
ORF1ab/nsp16277K277KaaAaaG88AY.250.000048
ORF1ab/nsp16277K277TaAaaCa88B.1.1.330.003367
ORF1ab/nsp16277K277RaAaaGa77AY.420.000282
ORF1ab/nsp16277K277KaaAaaG77AY.920.002011
ORF1ab/nsp16277K277delAAA---77B.10.000064
ORF1ab/nsp16277K277NaaAaaC57B.1.1.70.000004
ORF1ab/nsp16277K277NaaAaaT27B.1.1.70.000002
ORF1ab/nsp16277K277RaAaaGa77B.1.3510.000208
ORF1ab/nsp16277K277RaAaaGa77B.1.466.10.05036
ORF1ab/nsp16277K277IaAaaTa66AY.30.00006
ORF1ab/nsp16277K277RaAaaGa66AY.430.000027
ORF1ab/nsp16277K277RaAaaGa66C.370.000696
ORF1ab/nsp16277K277NaaAaaC55AY.1010.002452
ORF1ab/nsp16277K277delAAA---55AY.330.000334
ORF1ab/nsp16277K277KaaAaaG55B.1.1600.000156
ORF1ab/nsp16277K277RaAaaGa55B.1.177.600.001092
ORF1ab/nsp16277K277RaAaaGa55B.1.360.00073
ORF1ab/nsp16277K277delAAA---55P.10.000079
ORF1ab/nsp16277K277AAAAGCC240.111111
ORF1ab/nsp16277K277AAAaGCa240.111111
ORF1ab/nsp16277K277SAAATCC240.111111
ORF1ab/nsp16277K277SAAaTCa240.111111
ORF1ab/nsp16277K277SAAaTCa24All0
ORF1ab/nsp16277K277AAAAGCC24All0
ORF1ab/nsp16277K277AAAaGCa24All0
ORF1ab/nsp16277K277SAAATCC24All0
ORF1ab/nsp16277K277KaaAaaG44AY.1020.000106
ORF1ab/nsp16277K277delAAA---44AY.430.000018
ORF1ab/nsp16277K277RaAaaGa44AY.440.000024
ORF1ab/nsp16277K277KaaAaaG44B.10.000037
ORF1ab/nsp16277K277delAAA---44B.1.10.000073
ORF1ab/nsp16277K277KaaAaaG44B.1.1.70.000004
ORF1ab/nsp16277K277XAaaTaa44B.1.1.70.000004
ORF1ab/nsp16277K277delAAA---44B.1.617.20.000015
ORF1ab/nsp16277K277RaAaaGa44P.10.000063
ORF1ab/nsp16277K277XAaaTaa330.166667
ORF1ab/nsp16277K277delAAA---33AY.250.000018
ORF1ab/nsp16277K277KaaAaaG33AY.340.000291
ORF1ab/nsp16277K277KaaAaaG33AY.40.000005
ORF1ab/nsp16277K277TaAaaCa33AY.40.000005
ORF1ab/nsp16277K277KaaAaaG33AY.440.000018
ORF1ab/nsp16277K277del1Aaa-aa23B.1.1.70.000002
ORF1ab/nsp16277K277QAaaCaa23B.1.1.70.000002
ORF1ab/nsp16277K277QAaACaG13B.1.1.70.000001
ORF1ab/nsp16277K277del1AaA-aT13B.1.1.70.000001
ORF1ab/nsp16277K277delAAA---33B.1.1770.00004
ORF1ab/nsp16277K277del1Aaa-aa33B.1.20.000026
ORF1ab/nsp16277K277delAAA---33B.1.20.000026
ORF1ab/nsp16277K277delAAA---33B.1.5250.000339
ORF1ab/nsp16277K277NaaAaaC220.111111
ORF1ab/nsp16277K277EAaaGaa220.111111
ORF1ab/nsp16277K277DAaAGaC220.111111
ORF1ab/nsp16277K277YAaATaC220.111111
ORF1ab/nsp16277K277delAAA---220.111111
ORF1ab/nsp16277K277NaaAaaC22A.2.20.003378
ORF1ab/nsp16277K277DAaAGaC22All0
ORF1ab/nsp16277K277YAaATaC22All0
ORF1ab/nsp16277K277delAAA---22AY.1020.000053
ORF1ab/nsp16277K277EAaaGaa22AY.200.000078
ORF1ab/nsp16277K277TaAaaCa22AY.440.000012
ORF1ab/nsp16277K277NaaAaaC22AY.440.000012
ORF1ab/nsp16277K277NaaAaaC22AY.50.000041
ORF1ab/nsp16277K277KaaAaaG22AY.590.001059
ORF1ab/nsp16277K277KaaAaaG22AY.840.000875
ORF1ab/nsp16277K277KaaAaaG22AY.880.001768
ORF1ab/nsp16277K277KaaAaaG22AY.980.000158
ORF1ab/nsp16277K277NaaAaaT22B.10.000018
ORF1ab/nsp16277K277del1Aaa-aa12B.10.000009
ORF1ab/nsp16277K277del1AaA-aG12B.10.000009
ORF1ab/nsp16277K277QAaaCaa22B.1.10.000036
ORF1ab/nsp16277K277KaaAaaG22B.1.20.000018
ORF1ab/nsp16277K277NaaAaaC12B.1.20.000009
ORF1ab/nsp16277K277NaaAaaT12B.1.20.000009
ORF1ab/nsp16277K277delAAA---22B.1.5170.000854
ORF1ab/nsp16277K277KaaAaaG22B.1.5870.003795
ORF1ab/nsp16277K277del1Aaa-aa22B.1.5960.000174
ORF1ab/nsp16277K277RaAaaGa22B.1.617.20.000008
ORF1ab/nsp16277K277TaAaaCa22B.1.617.20.000008
ORF1ab/nsp16277K277delAAA---22B.1.6210.000177
ORF1ab/nsp16277K277KaaAaaG22P.10.000032
ORF1ab/nsp16277K277NaaAaaC22P.1.150.000465
ORF1ab/nsp16277K277KaaAaaG11A.20.000662
ORF1ab/nsp16277K277EAaaGaa11A.20.000662
ORF1ab/nsp16277K277delAAA---11A.2.40.003367
ORF1ab/nsp16277K277LAAaTTa11All0
ORF1ab/nsp16277K277VAAaGTa11All0
ORF1ab/nsp16277K277delAAA---11AY.1000.000046
ORF1ab/nsp16277K277RaAaaGa11AY.1020.000027
ORF1ab/nsp16277K277IaAaaTa11AY.1030.000006
ORF1ab/nsp16277K277RaAaaGa11AY.1030.000006
ORF1ab/nsp16277K277TaAaaCa11AY.1030.000006
ORF1ab/nsp16277K277KaaAaaG11AY.1030.000006
ORF1ab/nsp16277K277NaaAaaC11AY.1060.000335
ORF1ab/nsp16277K277delAAA---11AY.1080.001103
ORF1ab/nsp16277K277TaAaaCa11AY.1130.000142
ORF1ab/nsp16277K277NaaAaaC11AY.1130.000142
ORF1ab/nsp16277K277KaaAaaG11AY.1180.000063
ORF1ab/nsp16277K277RaAaaGa11AY.1210.000135
ORF1ab/nsp16277K277RaAaaGa11AY.130.000161
ORF1ab/nsp16277K277RaAaaGa11AY.16.10.00047
ORF1ab/nsp16277K277KaaAaaG11AY.230.00007
ORF1ab/nsp16277K277EAaaGaa11AY.230.00007
ORF1ab/nsp16277K277RaAaaGa11AY.290.000016
ORF1ab/nsp16277K277NaaAaaT11AY.30.00001
ORF1ab/nsp16277K277KaaAaaG11AY.360.000148
ORF1ab/nsp16277K277KaaAaaG11AY.390.000025
ORF1ab/nsp16277K277delAAA---11AY.390.000025
ORF1ab/nsp16277K277delAAA---11AY.40.000002
ORF1ab/nsp16277K277NaaAaaC11AY.4.20.000022
ORF1ab/nsp16277K277delAAA---11AY.420.00004
ORF1ab/nsp16277K277EAaaGaa11AY.430.000004
ORF1ab/nsp16277K277XAaaTaa11AY.430.000004
ORF1ab/nsp16277K277del1Aaa-aa11AY.440.000006
ORF1ab/nsp16277K277delAAA---11AY.440.000006
ORF1ab/nsp16277K277EAaaGaa11AY.440.000006
ORF1ab/nsp16277K277RaAaaGa11AY.450.000122
ORF1ab/nsp16277K277RaAaaGa11AY.50.000021
ORF1ab/nsp16277K277delAAA---11AY.540.000095
ORF1ab/nsp16277K277RaAaaGa11AY.610.000105
ORF1ab/nsp16277K277delAAA---11AY.680.000274
ORF1ab/nsp16277K277RaAaaGa11AY.7.10.000113
ORF1ab/nsp16277K277RaAaaGa11AY.9.20.000037
ORF1ab/nsp16277K277KaaAaaG11AY.970.001701
ORF1ab/nsp16277K277NaaAaaT11B0.000128
ORF1ab/nsp16277K277XAaaTaa11B.10.000009
ORF1ab/nsp16277K277EAaaGaa11B.10.000009
ORF1ab/nsp16277K277QAaaCaa11B.10.000009
ORF1ab/nsp16277K277IaAaaTa11B.10.000009
ORF1ab/nsp16277K277RaAaaGa11B.1.10.000018
ORF1ab/nsp16277K277KaaAaaG11B.1.10.000018
ORF1ab/nsp16277K277XAaaTaa11B.1.10.000018
ORF1ab/nsp16277K277NaaAaaT11B.1.1.1570.000913
ORF1ab/nsp16277K277delAAA---11B.1.1.2180.007692
ORF1ab/nsp16277K277QAaaCaa11B.1.1.3050.003861
ORF1ab/nsp16277K277RaAaaGa11B.1.1.3120.001912
ORF1ab/nsp16277K277delAAA---11B.1.1.3150.008475
ORF1ab/nsp16277K277RaAaaGa11B.1.1.3170.000412
ORF1ab/nsp16277K277RaAaaGa11B.1.1.3620.005618
ORF1ab/nsp16277K277delAAA---11B.1.1.4090.002833
ORF1ab/nsp16277K277delAAA---11B.1.1.460.004367
ORF1ab/nsp16277K277RaAaaGa11B.1.1.5190.00004
ORF1ab/nsp16277K277delAAA---11B.1.1.70.000001
ORF1ab/nsp16277K277LAAaTTa11B.1.1.70.000001
ORF1ab/nsp16277K277NaaAaaC11B.1.1.700.000341
ORF1ab/nsp16277K277KaaAaaG11B.1.110.30.000718
ORF1ab/nsp16277K277delAAA---11B.1.1400.018868
ORF1ab/nsp16277K277RaAaaGa11B.1.1600.000031
ORF1ab/nsp16277K277NaaAaaT11B.1.160.320.004292
ORF1ab/nsp16277K277KaaAaaG11B.1.1770.000013
ORF1ab/nsp16277K277QAaaCaa11B.1.1770.000013
ORF1ab/nsp16277K277delAAA---11B.1.177.440.000519
ORF1ab/nsp16277K277delAAA---11B.1.177.680.015152
ORF1ab/nsp16277K277TaAaaCa11B.1.20.000009
ORF1ab/nsp16277K277QAaaCaa11B.1.2400.000216
ORF1ab/nsp16277K277QAaaCaa11B.1.2420.018868
ORF1ab/nsp16277K277delAAA---11B.1.2580.000067
ORF1ab/nsp16277K277delAAA---11B.1.2600.003344
ORF1ab/nsp16277K277EAaaGaa11B.1.2910.019231
ORF1ab/nsp16277K277RaAaaGa11B.1.3110.000275
ORF1ab/nsp16277K277VAAaGTa11B.1.3510.00003
ORF1ab/nsp16277K277NaaAaaC11B.1.360.000146
ORF1ab/nsp16277K277QAaaCaa11B.1.360.000146
ORF1ab/nsp16277K277NaaAaaT11B.1.36.10.00114
ORF1ab/nsp16277K277KaaAaaG11B.1.36.70.004
ORF1ab/nsp16277K277KaaAaaG11B.1.4090.000781
ORF1ab/nsp16277K277delAAA---11B.1.4150.014286
ORF1ab/nsp16277K277delAAA---11B.1.416.10.001563
ORF1ab/nsp16277K277delAAA---11B.1.4270.00005
ORF1ab/nsp16277K277RaAaaGa11B.1.4290.000024
ORF1ab/nsp16277K277QAaaCaa11B.1.4380.006536
ORF1ab/nsp16277K277EAaaGaa11B.1.4970.000315
ORF1ab/nsp16277K277IaAaaTa11B.1.4970.000315
ORF1ab/nsp16277K277QAaaCaa11B.1.5250.000113
ORF1ab/nsp16277K277del1Aaa-aa11B.1.5260.000024
ORF1ab/nsp16277K277RaAaaGa11B.1.5760.000907
ORF1ab/nsp16277K277RaAaaGa11B.1.5960.000087
ORF1ab/nsp16277K277KaaAaaG11B.1.617.10.000129
ORF1ab/nsp16277K277delAAA---11B.1.6200.000946
ORF1ab/nsp16277K277delAAA---11B.1.621.10.000506
ORF1ab/nsp16277K277delAAA---11B.340.013699
ORF1ab/nsp16277K277NaaAaaT11C.140.004329
ORF1ab/nsp16277K277QAaaCaa11D.20.000075
ORF1ab/nsp16277K277delAAA---11P.1.10.000318
ORF1ab/nsp16277K277RaAaaGa11P.1.100.000269
ORF1ab/nsp16277K277del1Aaa-aa11P.1.100.000269
ORF1ab/nsp16277K277delAAA---11P.1.150.000232