CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 258

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16258A258VA7056VnonsyngCtgTt16431643121430-21432
ORF1ab/nsp16258A258delA7056deldelGCT---265265121430-21432
ORF1ab/nsp16258A258AA7056AsyngcTgcC1961560.79591821430-21432
ORF1ab/nsp16258A258AA7056AsyngcTgcA196240.12244921430-21432
ORF1ab/nsp16258A258AA7056AsyngcTgcG196160.081632721430-21432
ORF1ab/nsp16258A258SA7056SnonsynGctTct6262121430-21432
ORF1ab/nsp16258A258TA7056TnonsynGctAct1212121430-21432
ORF1ab/nsp16258A258PA7056PnonsynGctCct66121430-21432
ORF1ab/nsp16258A258DA7056DnonsyngCtgAt55121430-21432
ORF1ab/nsp16258A258del1A7056del1delGct-ct420.521430-21432
ORF1ab/nsp16258A258del1A7056del1delgCtg-t410.2521430-21432
ORF1ab/nsp16258A258del1A7056del1delgcTgc-410.2521430-21432
ORF1ab/nsp16258A258del2A7056del2delgCTg--210.521430-21432
ORF1ab/nsp16258A258del2A7056del2delGCT--N210.521430-21432
ORF1ab/nsp16258A258FA7056FnonsynGCtTTt11121430-21432
ORF1ab/nsp16258A258IA7056InonsynGCtATt11121430-21432
ORF1ab/nsp16258A258KA7056KnonsynGCTAAG11121430-21432
ORF1ab/nsp16258A258RA7056RnonsynGCtCGt11121430-21432
ORF1ab/nsp16258A258LA7056LnonsynGCTTTA11121430-21432
ORF1ab/nsp16258A258YA7056YnonsynGCTTAC11121430-21432

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16258A258VgCtgTt16431643All0.000314
ORF1ab/nsp16258A258VgCtgTt783783B.1.3750.641803
ORF1ab/nsp16258A258delGCT---265265All0.000051
ORF1ab/nsp16258A258AgcTgcC156196All0.00003
ORF1ab/nsp16258A258AgcTgcA24196All0.000005
ORF1ab/nsp16258A258AgcTgcG16196All0.000003
ORF1ab/nsp16258A258VgCtgTt152152B.1.1390.111437
ORF1ab/nsp16258A258VgCtgTt128128B.1.1.70.000115
ORF1ab/nsp16258A258delGCT---103103AY.39.10.00408
ORF1ab/nsp16258A258SGctTct6262All0.000012
ORF1ab/nsp16258A258VgCtgTt5252B.1.4290.001224
ORF1ab/nsp16258A258VgCtgTt4444B.1.20.000387
ORF1ab/nsp16258A258VgCtgTt4242B.1.4080.154982
ORF1ab/nsp16258A258AgcTgcC3335AY.430.000146
ORF1ab/nsp16258A258AgcTgcG135AY.430.000004
ORF1ab/nsp16258A258AgcTgcA135AY.430.000004
ORF1ab/nsp16258A258VgCtgTt3535B.10.000321
ORF1ab/nsp16258A258AgcTgcC3135B.1.1.70.000028
ORF1ab/nsp16258A258AgcTgcG335B.1.1.70.000003
ORF1ab/nsp16258A258AgcTgcA135B.1.1.70.000001
ORF1ab/nsp16258A258VgCtgTt3434AY.440.000207
ORF1ab/nsp16258A258VgCtgTt3131B.1.617.20.000117
ORF1ab/nsp16258A258VgCtgTt2727AY.40.000042
ORF1ab/nsp16258A258AgcTgcC2525B.1.20.00022
ORF1ab/nsp16258A258VgCtgTt2323AY.230.001604
ORF1ab/nsp16258A258delGCT---2121AY.390.000519
ORF1ab/nsp16258A258VgCtgTt2121B.1.2400.004527
ORF1ab/nsp16258A258VgCtgTt1616B.1.1.5190.000635
ORF1ab/nsp16258A258SGctTct1616B.1.1.70.000014
ORF1ab/nsp16258A258VgCtgTt1616B.1.2210.001137
ORF1ab/nsp16258A258delGCT---1616B.1.617.20.00006
ORF1ab/nsp16258A258VgCtgTt1414AY.30.000139
ORF1ab/nsp16258A258AgcTgcC1414AY.5.40.003874
ORF1ab/nsp16258A258VgCtgTt1414B.1.10.000254
ORF1ab/nsp16258A258AgcTgcC1313B.1.5060.309524
ORF1ab/nsp16258A258TGctAct1212All0.000002
ORF1ab/nsp16258A258VgCtgTt1212AY.1030.000075
ORF1ab/nsp16258A258AgcTgcC1112AY.40.000017
ORF1ab/nsp16258A258AgcTgcA112AY.40.000002
ORF1ab/nsp16258A258delGCT---1212B.1.1.70.000011
ORF1ab/nsp16258A258AgcTgcA1212P.30.019139
ORF1ab/nsp16258A258delGCT---1111AY.250.000066
ORF1ab/nsp16258A258VgCtgTt1111B.1.2340.001451
ORF1ab/nsp16258A258VgCtgTt1111B.1.3490.007863
ORF1ab/nsp16258A258VgCtgTt1010B.1.1770.000132
ORF1ab/nsp16258A258AgcTgcG99B.1.1.4470.321429
ORF1ab/nsp16258A258AgcTgcC99B.1.617.20.000034
ORF1ab/nsp16258A258VgCtgTt88AY.1110.001465
ORF1ab/nsp16258A258VgCtgTt88AY.430.000035
ORF1ab/nsp16258A258VgCtgTt88B.1.351.20.002421
ORF1ab/nsp16258A258VgCtgTt77AY.390.000173
ORF1ab/nsp16258A258SGctTct77AY.50.000145
ORF1ab/nsp16258A258VgCtgTt77P.10.00011
ORF1ab/nsp16258A258PGctCct66All0.000001
ORF1ab/nsp16258A258delGCT---66AY.450.00073
ORF1ab/nsp16258A258delGCT---66B.10.000055
ORF1ab/nsp16258A258VgCtgTt66B.1.1.3170.00247
ORF1ab/nsp16258A258delGCT---66B.1.1770.000079
ORF1ab/nsp16258A258delGCT---66B.1.20.000053
ORF1ab/nsp16258A258DgCtgAt55All0.000001
ORF1ab/nsp16258A258VgCtgTt55AY.290.000079
ORF1ab/nsp16258A258VgCtgTt55AY.60.000206
ORF1ab/nsp16258A258VgCtgTt55AY.98.10.000242
ORF1ab/nsp16258A258VgCtgTt55B.1.1.2630.007788
ORF1ab/nsp16258A258del1Gct-ct24All0
ORF1ab/nsp16258A258del1gcTgc-14All0
ORF1ab/nsp16258A258del1gCtg-t14All0
ORF1ab/nsp16258A258delGCT---44AY.440.000024
ORF1ab/nsp16258A258delGCT---44AY.50.000083
ORF1ab/nsp16258A258VgCtgTt44AY.99.20.000369
ORF1ab/nsp16258A258AgcTgcA24B.1.1770.000026
ORF1ab/nsp16258A258AgcTgcC14B.1.1770.000013
ORF1ab/nsp16258A258AgcTgcG14B.1.1770.000013
ORF1ab/nsp16258A258VgCtgTt44B.1.177.40.000844
ORF1ab/nsp16258A258VgCtgTt44B.1.3670.00317
ORF1ab/nsp16258A258VgCtgTt44P.20.000747
ORF1ab/nsp16258A258SGctTct33AY.1020.00008
ORF1ab/nsp16258A258delGCT---33AY.1160.00086
ORF1ab/nsp16258A258VgCtgTt33AY.200.000117
ORF1ab/nsp16258A258SGctTct33AY.300.001187
ORF1ab/nsp16258A258SGctTct33AY.40.000005
ORF1ab/nsp16258A258delGCT---33AY.430.000013
ORF1ab/nsp16258A258VgCtgTt33AY.50.000062
ORF1ab/nsp16258A258AgcTgcC33AY.9.20.00011
ORF1ab/nsp16258A258SGctTct33B.10.000027
ORF1ab/nsp16258A258delGCT---33B.1.10.000054
ORF1ab/nsp16258A258SGctTct33B.1.10.000054
ORF1ab/nsp16258A258VgCtgTt33B.1.1.3890.018182
ORF1ab/nsp16258A258delGCT---33B.1.1.5190.000119
ORF1ab/nsp16258A258TGctAct33B.1.1.70.000003
ORF1ab/nsp16258A258VgCtgTt33B.1.3110.000824
ORF1ab/nsp16258A258VgCtgTt33B.1.4270.000151
ORF1ab/nsp16258A258SGctTct33B.1.4990.003151
ORF1ab/nsp16258A258delGCT---33B.1.5250.000339
ORF1ab/nsp16258A258VgCtgTt33B.1.5750.00091
ORF1ab/nsp16258A258VgCtgTt33B.1.5960.000261
ORF1ab/nsp16258A258VgCtgTt33B.1.617.10.000387
ORF1ab/nsp16258A258VgCtgTt33B.1.6370.000219
ORF1ab/nsp16258A258delGCT---33P.10.000047
ORF1ab/nsp16258A258delGCT---220.111111
ORF1ab/nsp16258A258del2GCT--N12All0
ORF1ab/nsp16258A258del2gCTg--12All0
ORF1ab/nsp16258A258delGCT---22AY.1000.000092
ORF1ab/nsp16258A258VgCtgTt22AY.1060.00067
ORF1ab/nsp16258A258SGctTct22AY.1130.000285
ORF1ab/nsp16258A258VgCtgTt22AY.1160.000574
ORF1ab/nsp16258A258VgCtgTt22AY.1190.000071
ORF1ab/nsp16258A258delGCT---22AY.120.20.002571
ORF1ab/nsp16258A258AgcTgcC22AY.230.000139
ORF1ab/nsp16258A258VgCtgTt22AY.250.000012
ORF1ab/nsp16258A258VgCtgTt22AY.260.000057
ORF1ab/nsp16258A258SGctTct22AY.290.000032
ORF1ab/nsp16258A258delGCT---22AY.40.000003
ORF1ab/nsp16258A258delGCT---22AY.420.00008
ORF1ab/nsp16258A258AgcTgcC22AY.440.000012
ORF1ab/nsp16258A258delGCT---22AY.910.001461
ORF1ab/nsp16258A258TGctAct22B.10.000018
ORF1ab/nsp16258A258AgcTgcA12B.10.000009
ORF1ab/nsp16258A258AgcTgcC12B.10.000009
ORF1ab/nsp16258A258SGctTct22B.1.1.5190.000079
ORF1ab/nsp16258A258VgCtgTt22B.1.160.280.005848
ORF1ab/nsp16258A258TGctAct22B.1.1770.000026
ORF1ab/nsp16258A258VgCtgTt22B.1.1950.01005
ORF1ab/nsp16258A258VgCtgTt22B.1.2430.000139
ORF1ab/nsp16258A258delGCT---22B.1.2580.000133
ORF1ab/nsp16258A258delGCT---22B.1.3510.000059
ORF1ab/nsp16258A258VgCtgTt22B.1.36.70.008
ORF1ab/nsp16258A258VgCtgTt22B.1.416.10.003125
ORF1ab/nsp16258A258AgcTgcC22B.1.4290.000047
ORF1ab/nsp16258A258del1Gct-ct22B.1.6270.00404
ORF1ab/nsp16258A258delGCT---22P.1.10.000635
ORF1ab/nsp16258A258del1gCtg-t11A0.000387
ORF1ab/nsp16258A258AgcTgcC11A0.000387
ORF1ab/nsp16258A258delGCT---11A0.000387
ORF1ab/nsp16258A258del2GCT--N11A.2.40.003367
ORF1ab/nsp16258A258delGCT---11A.2.40.003367
ORF1ab/nsp16258A258VgCtgTt11A.2.50.000499
ORF1ab/nsp16258A258PGctCct11AD.20.000219
ORF1ab/nsp16258A258VgCtgTt11AE.80.000489
ORF1ab/nsp16258A258IGCtATt11All0
ORF1ab/nsp16258A258YGCTTAC11All0
ORF1ab/nsp16258A258RGCtCGt11All0
ORF1ab/nsp16258A258FGCtTTt11All0
ORF1ab/nsp16258A258LGCTTTA11All0
ORF1ab/nsp16258A258KGCTAAG11All0
ORF1ab/nsp16258A258VgCtgTt11AY.10.000396
ORF1ab/nsp16258A258VgCtgTt11AY.1000.000046
ORF1ab/nsp16258A258VgCtgTt11AY.1010.00049
ORF1ab/nsp16258A258VgCtgTt11AY.1020.000027
ORF1ab/nsp16258A258delGCT---11AY.1030.000006
ORF1ab/nsp16258A258SGctTct11AY.1030.000006
ORF1ab/nsp16258A258delGCT---11AY.1070.000466
ORF1ab/nsp16258A258delGCT---11AY.1080.001103
ORF1ab/nsp16258A258delGCT---11AY.1100.000113
ORF1ab/nsp16258A258delGCT---11AY.1130.000142
ORF1ab/nsp16258A258delGCT---11AY.1180.000063
ORF1ab/nsp16258A258VgCtgTt11AY.130.000161
ORF1ab/nsp16258A258SGctTct11AY.190.00114
ORF1ab/nsp16258A258DgCtgAt11AY.23.10.000417
ORF1ab/nsp16258A258PGctCct11AY.23.10.000417
ORF1ab/nsp16258A258SGctTct11AY.250.000006
ORF1ab/nsp16258A258AgcTgcG11AY.250.000006
ORF1ab/nsp16258A258VgCtgTt11AY.3.10.000085
ORF1ab/nsp16258A258FGCtTTt11AY.300.000396
ORF1ab/nsp16258A258delGCT---11AY.330.000067
ORF1ab/nsp16258A258VgCtgTt11AY.340.000097
ORF1ab/nsp16258A258delGCT---11AY.370.000316
ORF1ab/nsp16258A258delGCT---11AY.380.000499
ORF1ab/nsp16258A258del2gCTg--11AY.390.000025
ORF1ab/nsp16258A258AgcTgcA11AY.390.000025
ORF1ab/nsp16258A258IGCtATt11AY.4.20.000022
ORF1ab/nsp16258A258AgcTgcG11AY.4.20.000022
ORF1ab/nsp16258A258VgCtgTt11AY.4.2.10.000149
ORF1ab/nsp16258A258delGCT---11AY.4.50.000107
ORF1ab/nsp16258A258del1gcTgc-11AY.430.000004
ORF1ab/nsp16258A258SGctTct11AY.460.000104
ORF1ab/nsp16258A258delGCT---11AY.5.30.000337
ORF1ab/nsp16258A258VgCtgTt11AY.520.000814
ORF1ab/nsp16258A258delGCT---11AY.540.000095
ORF1ab/nsp16258A258delGCT---11AY.580.000907
ORF1ab/nsp16258A258SGctTct11AY.610.000105
ORF1ab/nsp16258A258delGCT---11AY.680.000274
ORF1ab/nsp16258A258VgCtgTt11AY.690.000187
ORF1ab/nsp16258A258AgcTgcC11AY.750.000056
ORF1ab/nsp16258A258TGctAct11AY.750.000056
ORF1ab/nsp16258A258delGCT---11AY.75.10.00018
ORF1ab/nsp16258A258VgCtgTt11AY.980.000079
ORF1ab/nsp16258A258KGCTAAG11B.10.000009
ORF1ab/nsp16258A258TGctAct11B.1.10.000018
ORF1ab/nsp16258A258AgcTgcA11B.1.10.000018
ORF1ab/nsp16258A258PGctCct11B.1.10.000018
ORF1ab/nsp16258A258delGCT---11B.1.1.1370.0125
ORF1ab/nsp16258A258VgCtgTt11B.1.1.1980.001468
ORF1ab/nsp16258A258delGCT---11B.1.1.2180.007692
ORF1ab/nsp16258A258VgCtgTt11B.1.1.2220.000204
ORF1ab/nsp16258A258SGctTct11B.1.1.2220.000204
ORF1ab/nsp16258A258AgcTgcC11B.1.1.2220.000204
ORF1ab/nsp16258A258VgCtgTt11B.1.1.2280.003049
ORF1ab/nsp16258A258AgcTgcC11B.1.1.250.000569
ORF1ab/nsp16258A258VgCtgTt11B.1.1.250.000569
ORF1ab/nsp16258A258VgCtgTt11B.1.1.2770.000759
ORF1ab/nsp16258A258SGctTct11B.1.1.280.000311
ORF1ab/nsp16258A258VgCtgTt11B.1.1.2800.003086
ORF1ab/nsp16258A258AgcTgcC11B.1.1.2840.000107
ORF1ab/nsp16258A258delGCT---11B.1.1.3150.008475
ORF1ab/nsp16258A258VgCtgTt11B.1.1.3960.045455
ORF1ab/nsp16258A258delGCT---11B.1.1.440.00241
ORF1ab/nsp16258A258delGCT---11B.1.1.460.004367
ORF1ab/nsp16258A258LGCTTTA11B.1.1.70.000001
ORF1ab/nsp16258A258DgCtgAt11B.1.1.70.000001
ORF1ab/nsp16258A258PGctCct11B.1.1.70.000001
ORF1ab/nsp16258A258delGCT---11B.1.1400.018868
ORF1ab/nsp16258A258SGctTct11B.1.1460.004237
ORF1ab/nsp16258A258VgCtgTt11B.1.1600.000031
ORF1ab/nsp16258A258SGctTct11B.1.1600.000031
ORF1ab/nsp16258A258PGctCct11B.1.1730.026316
ORF1ab/nsp16258A258SGctTct11B.1.1770.000013
ORF1ab/nsp16258A258VgCtgTt11B.1.177.210.000076
ORF1ab/nsp16258A258VgCtgTt11B.1.177.410.0025
ORF1ab/nsp16258A258VgCtgTt11B.1.177.450.000381
ORF1ab/nsp16258A258VgCtgTt11B.1.177.600.000218
ORF1ab/nsp16258A258SGctTct11B.1.177.650.000665
ORF1ab/nsp16258A258delGCT---11B.1.177.680.015152
ORF1ab/nsp16258A258delGCT---11B.1.1800.05
ORF1ab/nsp16258A258TGctAct11B.1.20.000009
ORF1ab/nsp16258A258SGctTct11B.1.20.000009
ORF1ab/nsp16258A258YGCTTAC11B.1.2340.000132
ORF1ab/nsp16258A258AgcTgcA11B.1.2580.000067
ORF1ab/nsp16258A258VgCtgTt11B.1.3360.002439
ORF1ab/nsp16258A258VgCtgTt11B.1.3500.002933
ORF1ab/nsp16258A258RGCtCGt11B.1.3510.00003
ORF1ab/nsp16258A258SGctTct11B.1.3510.00003
ORF1ab/nsp16258A258VgCtgTt11B.1.3510.00003
ORF1ab/nsp16258A258SGctTct11B.1.351.20.000303
ORF1ab/nsp16258A258AgcTgcC11B.1.360.000146
ORF1ab/nsp16258A258delGCT---11B.1.36.290.000517
ORF1ab/nsp16258A258VgCtgTt11B.1.3690.000285
ORF1ab/nsp16258A258VgCtgTt11B.1.3820.008929
ORF1ab/nsp16258A258delGCT---11B.1.4150.014286
ORF1ab/nsp16258A258VgCtgTt11B.1.4160.001269
ORF1ab/nsp16258A258delGCT---11B.1.416.10.001563
ORF1ab/nsp16258A258AgcTgcC11B.1.4270.00005
ORF1ab/nsp16258A258VgCtgTt11B.1.4280.00102
ORF1ab/nsp16258A258PGctCct11B.1.4290.000024
ORF1ab/nsp16258A258DgCtgAt11B.1.4620.007246
ORF1ab/nsp16258A258DgCtgAt11B.1.4970.000315
ORF1ab/nsp16258A258VgCtgTt11B.1.5250.000113
ORF1ab/nsp16258A258AgcTgcA11B.1.5260.000024
ORF1ab/nsp16258A258VgCtgTt11B.1.5610.000397
ORF1ab/nsp16258A258delGCT---11B.1.5610.000397
ORF1ab/nsp16258A258VgCtgTt11B.1.564.10.001577
ORF1ab/nsp16258A258VgCtgTt11B.1.5650.00081
ORF1ab/nsp16258A258VgCtgTt11B.1.5760.000907
ORF1ab/nsp16258A258VgCtgTt11B.1.5890.007576
ORF1ab/nsp16258A258AgcTgcC11B.1.5960.000087
ORF1ab/nsp16258A258TGctAct11B.1.617.20.000004
ORF1ab/nsp16258A258DgCtgAt11B.1.617.20.000004
ORF1ab/nsp16258A258delGCT---11B.1.6200.000946
ORF1ab/nsp16258A258delGCT---11B.1.6210.000089
ORF1ab/nsp16258A258delGCT---11B.1.6370.000073
ORF1ab/nsp16258A258SGctTct11B.1.6370.000073
ORF1ab/nsp16258A258AgcTgcA11B.60.00091
ORF1ab/nsp16258A258AgcTgcC11B.6.60.000889
ORF1ab/nsp16258A258delGCT---11C.36.3.10.002717
ORF1ab/nsp16258A258AgcTgcA11D.20.000075
ORF1ab/nsp16258A258VgCtgTt11P.1.140.000048
ORF1ab/nsp16258A258TGctAct11P.1.140.000048
ORF1ab/nsp16258A258delGCT---11Q.20.000613
ORF1ab/nsp16258A258VgCtgTt11R.10.00009