CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 255 | R255R | R7053R | syn | agG | agA | 375 | 319 | 0.850667 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255R | R7053R | syn | Agg | Cgg | 375 | 56 | 0.149333 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255S | R7053S | nonsyn | agG | agT | 309 | 305 | 0.987055 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255S | R7053S | nonsyn | agG | agC | 309 | 3 | 0.00970874 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255S | R7053S | nonsyn | AGg | TCg | 309 | 1 | 0.00323625 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255K | R7053K | nonsyn | aGg | aAg | 303 | 301 | 0.993399 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255K | R7053K | nonsyn | aGG | aAA | 303 | 2 | 0.00660066 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255del | R7053del | del | AGG | --- | 92 | 92 | 1 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255M | R7053M | nonsyn | aGg | aTg | 33 | 33 | 1 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255del1 | R7053del1 | del | aGg | a-g | 27 | 21 | 0.777778 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255del1 | R7053del1 | del | aGG | a-A | 27 | 2 | 0.0740741 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255del1 | R7053del1 | del | AgG | Gg- | 27 | 1 | 0.037037 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255del1 | R7053del1 | del | AGG | -NN | 27 | 1 | 0.037037 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255del1 | R7053del1 | del | AGg | -Ag | 27 | 1 | 0.037037 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255del1 | R7053del1 | del | Agg | -gg | 27 | 1 | 0.037037 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255G | R7053G | nonsyn | Agg | Ggg | 13 | 13 | 1 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255I | R7053I | nonsyn | aGG | aTT | 7 | 6 | 0.857143 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255I | R7053I | nonsyn | aGG | aTA | 7 | 1 | 0.142857 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255T | R7053T | nonsyn | aGg | aCg | 6 | 6 | 1 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255W | R7053W | nonsyn | Agg | Tgg | 5 | 5 | 1 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255del2 | R7053del2 | del | aGG | a-- | 4 | 2 | 0.5 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255del2 | R7053del2 | del | AGg | --g | 4 | 2 | 0.5 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255A | R7053A | nonsyn | AGG | GCT | 3 | 3 | 1 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255N | R7053N | nonsyn | aGG | aAT | 2 | 2 | 1 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255E | R7053E | nonsyn | AGg | GAg | 2 | 1 | 0.5 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255E | R7053E | nonsyn | AGG | GAA | 2 | 1 | 0.5 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255L | R7053L | nonsyn | AGg | TTg | 1 | 1 | 1 | 21421-21423 |
ORF1ab/nsp16 | 255 | R255F | R7053F | nonsyn | AGG | TTT | 1 | 1 | 1 | 21421-21423 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 319 | 375 | All | 0.000061 |
ORF1ab/nsp16 | 255 | R255R | Agg | Cgg | 56 | 375 | All | 0.000011 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 305 | 309 | All | 0.000058 |
ORF1ab/nsp16 | 255 | R255S | agG | agC | 3 | 309 | All | 0.000001 |
ORF1ab/nsp16 | 255 | R255S | AGg | TCg | 1 | 309 | All | 0 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 301 | 303 | All | 0.000058 |
ORF1ab/nsp16 | 255 | R255K | aGG | aAA | 2 | 303 | All | 0 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 93 | 93 | AY.66 | 0.099465 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 92 | 92 | All | 0.000018 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 47 | 86 | B.1.1.7 | 0.000042 |
ORF1ab/nsp16 | 255 | R255R | Agg | Cgg | 39 | 86 | B.1.1.7 | 0.000035 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 56 | 56 | C.31 | 1 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 51 | 51 | AY.120 | 0.001896 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 41 | 41 | B.1.1.7 | 0.000037 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 37 | 38 | B.1.1.7 | 0.000033 |
ORF1ab/nsp16 | 255 | R255S | AGg | TCg | 1 | 38 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 33 | 33 | All | 0.000006 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 33 | 33 | B.1.351 | 0.000981 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 31 | 31 | B.1.427 | 0.001565 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 21 | 27 | All | 0.000004 |
ORF1ab/nsp16 | 255 | R255del1 | aGG | a-A | 2 | 27 | All | 0 |
ORF1ab/nsp16 | 255 | R255del1 | Agg | -gg | 1 | 27 | All | 0 |
ORF1ab/nsp16 | 255 | R255del1 | AGG | -NN | 1 | 27 | All | 0 |
ORF1ab/nsp16 | 255 | R255del1 | AGg | -Ag | 1 | 27 | All | 0 |
ORF1ab/nsp16 | 255 | R255del1 | AgG | Gg- | 1 | 27 | All | 0 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 24 | 26 | B.1.617.2 | 0.00009 |
ORF1ab/nsp16 | 255 | R255R | Agg | Cgg | 2 | 26 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 20 | 20 | B.1.329 | 0.012151 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 17 | 17 | B.1.2 | 0.00015 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 15 | 16 | B.1 | 0.000137 |
ORF1ab/nsp16 | 255 | R255S | agG | agC | 1 | 16 | B.1 | 0.000009 |
ORF1ab/nsp16 | 255 | R255G | Agg | Ggg | 13 | 13 | All | 0.000002 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 13 | 13 | AY.7 | 0.002548 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 12 | 12 | AY.110 | 0.001352 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 10 | 12 | AY.4 | 0.000016 |
ORF1ab/nsp16 | 255 | R255R | Agg | Cgg | 2 | 12 | AY.4 | 0.000003 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 8 | 9 | AY.43 | 0.000035 |
ORF1ab/nsp16 | 255 | R255K | aGG | aAA | 1 | 9 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 255 | R255R | Agg | Cgg | 5 | 9 | B.1.526 | 0.000118 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 4 | 9 | B.1.526 | 0.000094 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp16 | 255 | R255I | aGG | aTT | 6 | 7 | All | 0.000001 |
ORF1ab/nsp16 | 255 | R255I | aGG | aTA | 1 | 7 | All | 0 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp16 | 255 | R255T | aGg | aCg | 6 | 6 | All | 0.000001 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 6 | 6 | AY.35 | 0.001398 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 5 | 6 | B.1.617.2 | 0.000019 |
ORF1ab/nsp16 | 255 | R255S | agG | agC | 1 | 6 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 255 | R255W | Agg | Tgg | 5 | 5 | All | 0.000001 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp16 | 255 | R255R | Agg | Cgg | 5 | 5 | B.1.177.57 | 0.001405 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 5 | 5 | B.1.523 | 0.012255 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp16 | 255 | R255W | Agg | Tgg | 4 | 4 | 0.222222 | |
ORF1ab/nsp16 | 255 | R255del2 | AGg | --g | 2 | 4 | All | 0 |
ORF1ab/nsp16 | 255 | R255del2 | aGG | a-- | 2 | 4 | All | 0 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 3 | 4 | AY.103 | 0.000019 |
ORF1ab/nsp16 | 255 | R255R | Agg | Cgg | 1 | 4 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 4 | 4 | AY.107 | 0.001864 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 3 | 4 | AY.44 | 0.000018 |
ORF1ab/nsp16 | 255 | R255R | Agg | Cgg | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 4 | 4 | B.1.1.138 | 0.024242 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 4 | 4 | B.1.1.432 | 0.005063 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp16 | 255 | R255A | AGG | GCT | 3 | 3 | All | 0.000001 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp16 | 255 | R255G | Agg | Ggg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp16 | 255 | R255T | aGg | aCg | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 2 | 2 | A.2.4 | 0.006734 |
ORF1ab/nsp16 | 255 | R255N | aGG | aAT | 2 | 2 | All | 0 |
ORF1ab/nsp16 | 255 | R255E | AGG | GAA | 1 | 2 | All | 0 |
ORF1ab/nsp16 | 255 | R255E | AGg | GAg | 1 | 2 | All | 0 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp16 | 255 | R255I | aGG | aTT | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 255 | R255I | aGG | aTA | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 255 | R255K | aGG | aAA | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp16 | 255 | R255G | Agg | Ggg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 2 | 2 | B.1.160.22 | 0.013514 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 2 | 2 | B.1.480 | 0.004975 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 1 | 2 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 255 | R255del1 | AGG | -NN | 1 | 2 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 2 | 2 | N.3 | 0.011628 |
ORF1ab/nsp16 | 255 | R255G | Agg | Ggg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 255 | R255I | aGG | aTT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 255 | R255G | Agg | Ggg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp16 | 255 | R255F | AGG | TTT | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 255 | R255L | AGg | TTg | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 255 | R255T | aGg | aCg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 255 | R255S | agG | agC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 255 | R255G | Agg | Ggg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 255 | R255I | aGG | aTT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp16 | 255 | R255del2 | aGG | a-- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 255 | R255del1 | AGg | -Ag | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 255 | R255T | aGg | aCg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 255 | R255del1 | aGG | a-A | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 255 | R255E | AGG | GAA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 255 | R255G | Agg | Ggg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 255 | R255del1 | Agg | -gg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 255 | R255N | aGG | aAT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp16 | 255 | R255del2 | AGg | --g | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp16 | 255 | R255del1 | aGG | a-A | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 255 | R255I | aGG | aTT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 255 | R255A | AGG | GCT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp16 | 255 | R255W | Agg | Tgg | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | B.1.1.217 | 0.003636 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp16 | 255 | R255R | Agg | Cgg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 255 | R255A | AGG | GCT | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | B.1.1.340 | 0.045455 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp16 | 255 | R255F | AGG | TTT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 255 | R255G | Agg | Ggg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp16 | 255 | R255T | aGg | aCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | B.1.180 | 0.05 |
ORF1ab/nsp16 | 255 | R255del2 | AGg | --g | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp16 | 255 | R255E | AGg | GAg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp16 | 255 | R255del1 | AgG | Gg- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp16 | 255 | R255A | AGG | GCT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 255 | R255G | Agg | Ggg | 1 | 1 | B.1.555 | 0.022222 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 255 | R255del2 | aGG | a-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 255 | R255I | aGG | aTT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp16 | 255 | R255G | Agg | Ggg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp16 | 255 | R255L | AGg | TTg | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp16 | 255 | R255N | aGG | aAT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 255 | R255M | aGg | aTg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 255 | R255I | aGG | aTT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp16 | 255 | R255del1 | aGg | a-g | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp16 | 255 | R255R | agG | agA | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp16 | 255 | R255del | AGG | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp16 | 255 | R255S | agG | agT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp16 | 255 | R255K | aGg | aAg | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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