CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 238

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16238Q238HQ7036HnonsyncaGcaT59574595320.99929521370-21372
ORF1ab/nsp16238Q238HQ7036HnonsyncaGcaC59574420.00070500621370-21372
ORF1ab/nsp16238Q238EQ7036EnonsynCagGag830830121370-21372
ORF1ab/nsp16238Q238QQ7036QsyncaGcaA527527121370-21372
ORF1ab/nsp16238Q238RQ7036RnonsyncAgcGg2942930.99659921370-21372
ORF1ab/nsp16238Q238RQ7036RnonsynCAgAGg29410.0034013621370-21372
ORF1ab/nsp16238Q238delQ7036deldelCAG---101101121370-21372
ORF1ab/nsp16238Q238YQ7036YnonsynCaGTaT7676121370-21372
ORF1ab/nsp16238Q238XQ7036XnonsynCagTag39380.97435921370-21372
ORF1ab/nsp16238Q238XQ7036XnonsynCaGTaA3910.02564121370-21372
ORF1ab/nsp16238Q238PQ7036PnonsyncAgcCg2828121370-21372
ORF1ab/nsp16238Q238LQ7036LnonsyncAgcTg1616121370-21372
ORF1ab/nsp16238Q238KQ7036KnonsynCagAag1111121370-21372
ORF1ab/nsp16238Q238NQ7036NnonsynCaGAaT33121370-21372
ORF1ab/nsp16238Q238CQ7036CnonsynCAGTGT33121370-21372
ORF1ab/nsp16238Q238del1Q7036del1delcaGca-320.66666721370-21372
ORF1ab/nsp16238Q238del1Q7036del1delcAgc-g310.33333321370-21372
ORF1ab/nsp16238Q238SQ7036SnonsynCAGTCC210.521370-21372
ORF1ab/nsp16238Q238SQ7036SnonsynCAgTCg210.521370-21372
ORF1ab/nsp16238Q238del2Q7036del2delCAG--A11121370-21372
ORF1ab/nsp16238Q238WQ7036WnonsynCAgTGg11121370-21372

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16238Q238HcaGcaT5953259574All0.011386
ORF1ab/nsp16238Q238HcaGcaC4259574All0.000008
ORF1ab/nsp16238Q238HcaGcaT2533025330AY.390.625942
ORF1ab/nsp16238Q238HcaGcaT2469124691AY.39.10.978094
ORF1ab/nsp16238Q238HcaGcaT42724276B.1.617.20.016086
ORF1ab/nsp16238Q238HcaGcaC44276B.1.617.20.000015
ORF1ab/nsp16238Q238HcaGcaT13661366AY.39.1.10.989855
ORF1ab/nsp16238Q238ECagGag830830All0.000159
ORF1ab/nsp16238Q238ECagGag803803AY.440.004888
ORF1ab/nsp16238Q238HcaGcaT648648AY.39.20.998459
ORF1ab/nsp16238Q238QcaGcaA527527All0.000101
ORF1ab/nsp16238Q238HcaGcaT520522AY.40.000809
ORF1ab/nsp16238Q238HcaGcaC2522AY.40.000003
ORF1ab/nsp16238Q238HcaGcaT396413B.1.1.70.000355
ORF1ab/nsp16238Q238HcaGcaC17413B.1.1.70.000015
ORF1ab/nsp16238Q238RcAgcGg293294All0.000056
ORF1ab/nsp16238Q238RCAgAGg1294All0
ORF1ab/nsp16238Q238HcaGcaT246246AY.250.00148
ORF1ab/nsp16238Q238HcaGcaT206206AY.440.001254
ORF1ab/nsp16238Q238HcaGcaT203203P.10.003198
ORF1ab/nsp16238Q238QcaGcaA175175AY.50.003614
ORF1ab/nsp16238Q238RcAgcGg151151AY.40.000235
ORF1ab/nsp16238Q238HcaGcaT145145AY.160.055049
ORF1ab/nsp16238Q238HcaGcaT113114AY.430.000501
ORF1ab/nsp16238Q238HcaGcaC1114AY.430.000004
ORF1ab/nsp16238Q238QcaGcaA108108B.10.000989
ORF1ab/nsp16238Q238HcaGcaT103103B.1.10.001869
ORF1ab/nsp16238Q238delCAG---101101All0.000019
ORF1ab/nsp16238Q238HcaGcaT9191B.1.20.000801
ORF1ab/nsp16238Q238HcaGcaT8889AY.1030.000546
ORF1ab/nsp16238Q238HcaGcaC189AY.1030.000006
ORF1ab/nsp16238Q238HcaGcaT8383B.1.177.780.805825
ORF1ab/nsp16238Q238HcaGcaT7979AY.4.20.001713
ORF1ab/nsp16238Q238YCaGTaT7676All0.000015
ORF1ab/nsp16238Q238YCaGTaT6969AY.390.001705
ORF1ab/nsp16238Q238HcaGcaT6367B.10.000577
ORF1ab/nsp16238Q238HcaGcaC467B.10.000037
ORF1ab/nsp16238Q238HcaGcaT6060B.1.160.200.535714
ORF1ab/nsp16238Q238QcaGcaA5757AY.40.000089
ORF1ab/nsp16238Q238HcaGcaT5454AY.260.001529
ORF1ab/nsp16238Q238HcaGcaT4949B.1.1600.001528
ORF1ab/nsp16238Q238QcaGcaA4343B.1.617.20.000162
ORF1ab/nsp16238Q238XCagTag3839All0.000007
ORF1ab/nsp16238Q238XCaGTaA139All0
ORF1ab/nsp16238Q238RcAgcGg2929AY.1190.001024
ORF1ab/nsp16238Q238HcaGcaT2929AY.23.10.012104
ORF1ab/nsp16238Q238PcAgcCg2828All0.000005
ORF1ab/nsp16238Q238RcAgcGg2626B.1.1.70.000023
ORF1ab/nsp16238Q238HcaGcaT2626B.1.4290.000612
ORF1ab/nsp16238Q238HcaGcaT2525B.1.5260.000588
ORF1ab/nsp16238Q238HcaGcaT2525B.1.6210.002213
ORF1ab/nsp16238Q238HcaGcaT2424AY.1080.026461
ORF1ab/nsp16238Q238HcaGcaT2323AY.1170.001944
ORF1ab/nsp16238Q238HcaGcaT2121AY.330.001402
ORF1ab/nsp16238Q238HcaGcaT2020AY.360.002964
ORF1ab/nsp16238Q238QcaGcaA1919B.1.3490.013581
ORF1ab/nsp16238Q238HcaGcaT1818AY.700.003753
ORF1ab/nsp16238Q238HcaGcaT1717AY.200.000661
ORF1ab/nsp16238Q238LcAgcTg1616All0.000003
ORF1ab/nsp16238Q238HcaGcaT1315AY.1020.000345
ORF1ab/nsp16238Q238HcaGcaC215AY.1020.000053
ORF1ab/nsp16238Q238HcaGcaT1515B.1.1770.000198
ORF1ab/nsp16238Q238HcaGcaT1515B.1.2580.000998
ORF1ab/nsp16238Q238HcaGcaT1414AY.9.20.000514
ORF1ab/nsp16238Q238RcAgcGg1414B.1.20.000123
ORF1ab/nsp16238Q238QcaGcaA1414P.1.150.003253
ORF1ab/nsp16238Q238HcaGcaT1213AY.470.000373
ORF1ab/nsp16238Q238HcaGcaC113AY.470.000031
ORF1ab/nsp16238Q238HcaGcaT1313AY.920.003735
ORF1ab/nsp16238Q238HcaGcaT1313B.1.1.390.006626
ORF1ab/nsp16238Q238HcaGcaT1313B.1.3510.000386
ORF1ab/nsp16238Q238HcaGcaT1213P.1.140.000574
ORF1ab/nsp16238Q238HcaGcaC113P.1.140.000048
ORF1ab/nsp16238Q238HcaGcaT1212Q.10.001516
ORF1ab/nsp16238Q238KCagAag1111All0.000002
ORF1ab/nsp16238Q238delCAG---1111B.1.20.000097
ORF1ab/nsp16238Q238delCAG---1010B.1.1.70.000009
ORF1ab/nsp16238Q238HcaGcaT99AY.300.003562
ORF1ab/nsp16238Q238HcaGcaT99AY.46.60.00065
ORF1ab/nsp16238Q238delCAG---99B.10.000082
ORF1ab/nsp16238Q238QcaGcaA99B.1.10.000163
ORF1ab/nsp16238Q238HcaGcaT99B.1.2930.1125
ORF1ab/nsp16238Q238HcaGcaT99B.1.438.10.000965
ORF1ab/nsp16238Q238HcaGcaT99B.1.5240.012658
ORF1ab/nsp16238Q238HcaGcaT88AY.1160.002294
ORF1ab/nsp16238Q238HcaGcaT88AY.1190.000282
ORF1ab/nsp16238Q238HcaGcaT88AY.420.000322
ORF1ab/nsp16238Q238QcaGcaA88AY.430.000035
ORF1ab/nsp16238Q238HcaGcaC48AY.610.000419
ORF1ab/nsp16238Q238HcaGcaT48AY.610.000419
ORF1ab/nsp16238Q238XCagTag88B.10.000073
ORF1ab/nsp16238Q238QcaGcaA88B.1.1.70.000007
ORF1ab/nsp16238Q238RcAgcGg88B.1.1600.00025
ORF1ab/nsp16238Q238ECagGag88B.1.3020.106667
ORF1ab/nsp16238Q238ECagGag88B.1.617.20.00003
ORF1ab/nsp16238Q238HcaGcaT77A.20.004633
ORF1ab/nsp16238Q238delCAG---77AY.250.000042
ORF1ab/nsp16238Q238PcAgcCg77B.1.1.70.000006
ORF1ab/nsp16238Q238RcAgcGg77B.1.617.20.000026
ORF1ab/nsp16238Q238RcAgcGg77P.1.70.002235
ORF1ab/nsp16238Q238LcAgcTg66AY.1030.000037
ORF1ab/nsp16238Q238HcaGcaT66AY.4.50.000645
ORF1ab/nsp16238Q238PcAgcCg66AY.430.000027
ORF1ab/nsp16238Q238RcAgcGg66AY.440.000037
ORF1ab/nsp16238Q238HcaGcaT66AY.750.000336
ORF1ab/nsp16238Q238HcaGcaT66AY.870.004996
ORF1ab/nsp16238Q238QcaGcaA66B.1.20.000053
ORF1ab/nsp16238Q238QcaGcaA66B.1.4990.006303
ORF1ab/nsp16238Q238HcaGcaT55AY.1130.000712
ORF1ab/nsp16238Q238HcaGcaT55AY.230.000349
ORF1ab/nsp16238Q238QcaGcaA55AY.290.000079
ORF1ab/nsp16238Q238HcaGcaT55AY.30.00005
ORF1ab/nsp16238Q238delCAG---55AY.430.000022
ORF1ab/nsp16238Q238HcaGcaT55AY.98.10.000242
ORF1ab/nsp16238Q238HcaGcaT55B.1.1.2840.000537
ORF1ab/nsp16238Q238QcaGcaA55B.1.2390.006105
ORF1ab/nsp16238Q238HcaGcaT55B.1.3690.001426
ORF1ab/nsp16238Q238QcaGcaA55B.1.3690.001426
ORF1ab/nsp16238Q238delCAG---55B.1.5250.000566
ORF1ab/nsp16238Q238HcaGcaT55B.1.5250.000566
ORF1ab/nsp16238Q238delCAG---55B.1.617.20.000019
ORF1ab/nsp16238Q238HcaGcaT55C.370.00058
ORF1ab/nsp16238Q238delCAG---55P.10.000079
ORF1ab/nsp16238Q238RcAgcGg55P.1.120.00242
ORF1ab/nsp16238Q238HcaGcaT44AY.1010.001962
ORF1ab/nsp16238Q238HcaGcaT44AY.1200.000149
ORF1ab/nsp16238Q238HcaGcaT44AY.380.001997
ORF1ab/nsp16238Q238RcAgcGg44AY.420.000161
ORF1ab/nsp16238Q238HcaGcaT44AY.450.000487
ORF1ab/nsp16238Q238LcAgcTg44B.1.10.000073
ORF1ab/nsp16238Q238HcaGcaT44B.1.1.1890.006051
ORF1ab/nsp16238Q238HcaGcaT44B.1.1.3110.001433
ORF1ab/nsp16238Q238HcaGcaT44B.1.1.5190.000159
ORF1ab/nsp16238Q238HcaGcaT44B.1.1.5210.02139
ORF1ab/nsp16238Q238HcaGcaT44B.1.1570.01194
ORF1ab/nsp16238Q238HcaGcaT34B.1.177.210.000229
ORF1ab/nsp16238Q238HcaGcaC14B.1.177.210.000076
ORF1ab/nsp16238Q238PcAgcCg44B.1.20.000035
ORF1ab/nsp16238Q238HcaGcaT44B.1.4270.000202
ORF1ab/nsp16238Q238HcaGcaT44C.160.004242
ORF1ab/nsp16238Q238HcaGcaT44C.380.032258
ORF1ab/nsp16238Q238CCAGTGT33All0.000001
ORF1ab/nsp16238Q238NCaGAaT33All0.000001
ORF1ab/nsp16238Q238del1caGca-23All0
ORF1ab/nsp16238Q238del1cAgc-g13All0
ORF1ab/nsp16238Q238RcAgcGg33AY.1000.000138
ORF1ab/nsp16238Q238HcaGcaT33AY.1180.000188
ORF1ab/nsp16238Q238delCAG---33AY.40.000005
ORF1ab/nsp16238Q238RcAgcGg33AY.430.000013
ORF1ab/nsp16238Q238HcaGcaT33AY.46.10.00308
ORF1ab/nsp16238Q238HcaGcaT33AY.800.003386
ORF1ab/nsp16238Q238HcaGcaT33AY.950.002283
ORF1ab/nsp16238Q238HcaGcaT33B.1.1.1980.004405
ORF1ab/nsp16238Q238HcaGcaT33B.1.1.2140.000166
ORF1ab/nsp16238Q238HcaGcaT33B.1.1.3180.000905
ORF1ab/nsp16238Q238delCAG---33B.1.1.5190.000119
ORF1ab/nsp16238Q238RcAgcGg33B.1.1.5190.000119
ORF1ab/nsp16238Q238XCagTag33B.1.1.70.000003
ORF1ab/nsp16238Q238QcaGcaA33B.1.1770.00004
ORF1ab/nsp16238Q238XCagTag33B.1.20.000026
ORF1ab/nsp16238Q238QcaGcaA33B.1.2210.000213
ORF1ab/nsp16238Q238HcaGcaT33B.1.2340.000396
ORF1ab/nsp16238Q238HcaGcaT33B.1.3080.103448
ORF1ab/nsp16238Q238HcaGcaT33B.1.3110.000824
ORF1ab/nsp16238Q238HcaGcaT33B.1.3130.019737
ORF1ab/nsp16238Q238HcaGcaT33B.1.3370.01676
ORF1ab/nsp16238Q238HcaGcaT33B.1.360.000438
ORF1ab/nsp16238Q238HcaGcaT33B.1.5580.013699
ORF1ab/nsp16238Q238HcaGcaT33B.1.5640.001278
ORF1ab/nsp16238Q238QcaGcaA33B.1.5760.00272
ORF1ab/nsp16238Q238QcaGcaA33B.1.5810.028302
ORF1ab/nsp16238Q238HcaGcaT33B.1.595.40.021898
ORF1ab/nsp16238Q238QcaGcaA33B.1.5960.000261
ORF1ab/nsp16238Q238PcAgcCg33B.1.617.20.000011
ORF1ab/nsp16238Q238YCaGTaT33B.1.617.20.000011
ORF1ab/nsp16238Q238HcaGcaT33D.20.000225
ORF1ab/nsp16238Q238QcaGcaA33P.10.000047
ORF1ab/nsp16238Q238HcaGcaT33P.1.150.000697
ORF1ab/nsp16238Q238delCAG---220.111111
ORF1ab/nsp16238Q238delCAG---22A.2.40.006734
ORF1ab/nsp16238Q238SCAgTCg12All0
ORF1ab/nsp16238Q238SCAGTCC12All0
ORF1ab/nsp16238Q238QcaGcaA22AY.1000.000092
ORF1ab/nsp16238Q238HcaGcaT22AY.1110.000366
ORF1ab/nsp16238Q238ECagGag22AY.1170.000169
ORF1ab/nsp16238Q238YCaGTaT22AY.160.000759
ORF1ab/nsp16238Q238RcAgcGg22AY.250.000012
ORF1ab/nsp16238Q238HcaGcaT22AY.280.003781
ORF1ab/nsp16238Q238RcAgcGg22AY.30.00002
ORF1ab/nsp16238Q238delCAG---22AY.330.000134
ORF1ab/nsp16238Q238ECagGag22AY.40.000003
ORF1ab/nsp16238Q238KCagAag22AY.40.000003
ORF1ab/nsp16238Q238HcaGcaT22AY.4.30.001684
ORF1ab/nsp16238Q238HcaGcaT22AY.460.000208
ORF1ab/nsp16238Q238HcaGcaT22AY.670.000929
ORF1ab/nsp16238Q238QcaGcaA22AY.870.001665
ORF1ab/nsp16238Q238XCagTag22B0.000256
ORF1ab/nsp16238Q238HcaGcaT22B.1.1.2220.000408
ORF1ab/nsp16238Q238HcaGcaT22B.1.1.330.000842
ORF1ab/nsp16238Q238HcaGcaT22B.1.1.550.025974
ORF1ab/nsp16238Q238KCagAag22B.1.1.70.000002
ORF1ab/nsp16238Q238ECagGag22B.1.1.70.000002
ORF1ab/nsp16238Q238HcaGcaT22B.1.1110.00235
ORF1ab/nsp16238Q238delCAG---22B.1.1770.000026
ORF1ab/nsp16238Q238RcAgcGg22B.1.1770.000026
ORF1ab/nsp16238Q238HcaGcaT22B.1.1920.018519
ORF1ab/nsp16238Q238ECagGag22B.1.20.000018
ORF1ab/nsp16238Q238XCagTag12B.1.2210.000071
ORF1ab/nsp16238Q238XCaGTaA12B.1.2210.000071
ORF1ab/nsp16238Q238delCAG---22B.1.2580.000133
ORF1ab/nsp16238Q238HcaGcaT22B.1.258.140.001961
ORF1ab/nsp16238Q238RcAgcGg22B.1.3420.2
ORF1ab/nsp16238Q238HcaGcaT22B.1.415.10.015152
ORF1ab/nsp16238Q238QcaGcaA22B.1.4290.000047
ORF1ab/nsp16238Q238PcAgcCg22B.1.4290.000047
ORF1ab/nsp16238Q238HcaGcaT22B.1.4590.008163
ORF1ab/nsp16238Q238HcaGcaT22B.1.466.20.000782
ORF1ab/nsp16238Q238HcaGcaT22B.1.5300.014286
ORF1ab/nsp16238Q238RcAgcGg22B.1.5610.000794
ORF1ab/nsp16238Q238HcaGcaT22B.1.595.10.011696
ORF1ab/nsp16238Q238HcaGcaT22B.1.617.10.000258
ORF1ab/nsp16238Q238HcaGcaT22B.1.6280.000705
ORF1ab/nsp16238Q238HcaGcaT22B.400.000729
ORF1ab/nsp16238Q238HcaGcaT22C.260.014706
ORF1ab/nsp16238Q238HcaGcaC22P.1.160.000748
ORF1ab/nsp16238Q238HcaGcaT22P.1.40.001953
ORF1ab/nsp16238Q238HcaGcaT22W.30.010526
ORF1ab/nsp16238Q238HcaGcaT11A0.000387
ORF1ab/nsp16238Q238KCagAag11A.10.000282
ORF1ab/nsp16238Q238QcaGcaA11A.20.000662
ORF1ab/nsp16238Q238RcAgcGg11A.2.40.003367
ORF1ab/nsp16238Q238HcaGcaT11A.210.00277
ORF1ab/nsp16238Q238HcaGcaT11A.23.10.000704
ORF1ab/nsp16238Q238HcaGcaT11AA.80.022222
ORF1ab/nsp16238Q238del2CAG--A11All0
ORF1ab/nsp16238Q238WCAgTGg11All0
ORF1ab/nsp16238Q238HcaGcaT11AU.30.00211
ORF1ab/nsp16238Q238delCAG---11AY.1000.000046
ORF1ab/nsp16238Q238del1caGca-11AY.1000.000046
ORF1ab/nsp16238Q238RcAgcGg11AY.1020.000027
ORF1ab/nsp16238Q238QcaGcaA11AY.1050.000643
ORF1ab/nsp16238Q238HcaGcaT11AY.1050.000643
ORF1ab/nsp16238Q238HcaGcaT11AY.1060.000335
ORF1ab/nsp16238Q238delCAG---11AY.1080.001103
ORF1ab/nsp16238Q238HcaGcaT11AY.1100.000113
ORF1ab/nsp16238Q238RCAgAGg11AY.1100.000113
ORF1ab/nsp16238Q238PcAgcCg11AY.1160.000287
ORF1ab/nsp16238Q238HcaGcaT11AY.116.10.000311
ORF1ab/nsp16238Q238delCAG---11AY.1180.000063
ORF1ab/nsp16238Q238PcAgcCg11AY.1180.000063
ORF1ab/nsp16238Q238delCAG---11AY.1190.000035
ORF1ab/nsp16238Q238HcaGcaT11AY.120.2.10.000498
ORF1ab/nsp16238Q238HcaGcaC11AY.16.10.00047
ORF1ab/nsp16238Q238RcAgcGg11AY.200.000039
ORF1ab/nsp16238Q238QcaGcaA11AY.250.000006
ORF1ab/nsp16238Q238XCagTag11AY.250.000006
ORF1ab/nsp16238Q238QcaGcaA11AY.260.000028
ORF1ab/nsp16238Q238QcaGcaA11AY.270.000065
ORF1ab/nsp16238Q238RcAgcGg11AY.290.000016
ORF1ab/nsp16238Q238QcaGcaA11AY.30.00001
ORF1ab/nsp16238Q238HcaGcaT11AY.340.000097
ORF1ab/nsp16238Q238XCagTag11AY.390.000025
ORF1ab/nsp16238Q238QcaGcaA11AY.390.000025
ORF1ab/nsp16238Q238KCagAag11AY.390.000025
ORF1ab/nsp16238Q238YCaGTaT11AY.39.10.00004
ORF1ab/nsp16238Q238YCaGTaT11AY.39.1.10.000725
ORF1ab/nsp16238Q238del1cAgc-g11AY.40.000002
ORF1ab/nsp16238Q238LcAgcTg11AY.40.000002
ORF1ab/nsp16238Q238delCAG---11AY.4.20.000022
ORF1ab/nsp16238Q238HcaGcaT11AY.4.2.10.000149
ORF1ab/nsp16238Q238HcaGcaT11AY.400.000964
ORF1ab/nsp16238Q238delCAG---11AY.420.00004
ORF1ab/nsp16238Q238QcaGcaA11AY.420.00004
ORF1ab/nsp16238Q238XCagTag11AY.430.000004
ORF1ab/nsp16238Q238QcaGcaA11AY.440.000006
ORF1ab/nsp16238Q238XCagTag11AY.440.000006
ORF1ab/nsp16238Q238QcaGcaA11AY.450.000122
ORF1ab/nsp16238Q238KCagAag11AY.460.000104
ORF1ab/nsp16238Q238XCagTag11AY.460.000104
ORF1ab/nsp16238Q238del1caGca-11AY.46.40.000165
ORF1ab/nsp16238Q238RcAgcGg11AY.470.000031
ORF1ab/nsp16238Q238HcaGcaT11AY.50.000021
ORF1ab/nsp16238Q238delCAG---11AY.540.000095
ORF1ab/nsp16238Q238RcAgcGg11AY.550.000917
ORF1ab/nsp16238Q238QcaGcaA11AY.590.00053
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ORF1ab/nsp16238Q238QcaGcaA11AY.60.000041
ORF1ab/nsp16238Q238RcAgcGg11AY.600.000938
ORF1ab/nsp16238Q238XCagTag11AY.620.000436
ORF1ab/nsp16238Q238HcaGcaT11AY.650.000533
ORF1ab/nsp16238Q238RcAgcGg11AY.650.000533
ORF1ab/nsp16238Q238QcaGcaA11AY.660.00107
ORF1ab/nsp16238Q238delCAG---11AY.670.000464
ORF1ab/nsp16238Q238delCAG---11AY.680.000274
ORF1ab/nsp16238Q238HcaGcaT11AY.7.20.000559
ORF1ab/nsp16238Q238XCagTag11AY.750.000056
ORF1ab/nsp16238Q238QcaGcaA11AY.750.000056
ORF1ab/nsp16238Q238XCagTag11AY.75.10.00018
ORF1ab/nsp16238Q238HcaGcaC11AY.75.10.00018
ORF1ab/nsp16238Q238XCagTag11AY.820.001357
ORF1ab/nsp16238Q238QcaGcaA11AY.840.000437
ORF1ab/nsp16238Q238RcAgcGg11AY.890.004902
ORF1ab/nsp16238Q238HcaGcaT11AY.90.000068
ORF1ab/nsp16238Q238QcaGcaA11AY.9.10.000084
ORF1ab/nsp16238Q238HcaGcaT11AY.910.00073
ORF1ab/nsp16238Q238HcaGcaT11AY.930.000273
ORF1ab/nsp16238Q238delCAG---11AY.950.000761
ORF1ab/nsp16238Q238KCagAag11B.10.000009
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ORF1ab/nsp16238Q238RcAgcGg11B.1.10.000018
ORF1ab/nsp16238Q238NCaGAaT11B.1.10.000018
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.10.000327
ORF1ab/nsp16238Q238QcaGcaA11B.1.1.1220.045455
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.1570.000913
ORF1ab/nsp16238Q238QcaGcaA11B.1.1.2100.005714
ORF1ab/nsp16238Q238QcaGcaA11B.1.1.2430.004082
ORF1ab/nsp16238Q238QcaGcaA11B.1.1.250.000569
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.250.000569
ORF1ab/nsp16238Q238RcAgcGg11B.1.1.250.000569
ORF1ab/nsp16238Q238QcaGcaA11B.1.1.2580.003257
ORF1ab/nsp16238Q238QcaGcaA11B.1.1.2770.000759
ORF1ab/nsp16238Q238KCagAag11B.1.1.2820.011628
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ORF1ab/nsp16238Q238delCAG---11B.1.1.3060.000438
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.3120.001912
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.3160.000925
ORF1ab/nsp16238Q238QcaGcaA11B.1.1.3480.000796
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.3690.000446
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.3720.000689
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.3800.009804
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.3890.006061
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.3980.003226
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.4020.011111
ORF1ab/nsp16238Q238QcaGcaA11B.1.1.4020.011111
ORF1ab/nsp16238Q238XCagTag11B.1.1.4110.014706
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.4530.008475
ORF1ab/nsp16238Q238delCAG---11B.1.1.460.004367
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.510.001718
ORF1ab/nsp16238Q238XCagTag11B.1.1.5190.00004
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.5220.017241
ORF1ab/nsp16238Q238LcAgcTg11B.1.1.70.000001
ORF1ab/nsp16238Q238CCAGTGT11B.1.1.70.000001
ORF1ab/nsp16238Q238del2CAG--A11B.1.1.70.000001
ORF1ab/nsp16238Q238HcaGcaT11B.1.1.700.000341
ORF1ab/nsp16238Q238HcaGcaT11B.1.110.30.000718
ORF1ab/nsp16238Q238HcaGcaT11B.1.160.180.007299
ORF1ab/nsp16238Q238SCAGTCC11B.1.1770.000013
ORF1ab/nsp16238Q238XCagTag11B.1.1770.000013
ORF1ab/nsp16238Q238HcaGcaT11B.1.177.110.001698
ORF1ab/nsp16238Q238HcaGcaT11B.1.177.310.011494
ORF1ab/nsp16238Q238HcaGcaT11B.1.177.330.001645
ORF1ab/nsp16238Q238HcaGcaT11B.1.177.440.000519
ORF1ab/nsp16238Q238delCAG---11B.1.177.680.015152
ORF1ab/nsp16238Q238RcAgcGg11B.1.177.690.001484
ORF1ab/nsp16238Q238HcaGcaT11B.1.177.730.000566
ORF1ab/nsp16238Q238PcAgcCg11B.1.177.810.000189
ORF1ab/nsp16238Q238HcaGcaT11B.1.177.810.000189
ORF1ab/nsp16238Q238HcaGcaT11B.1.177.820.000477
ORF1ab/nsp16238Q238HcaGcaT11B.1.177.830.001481
ORF1ab/nsp16238Q238QcaGcaA11B.1.177.870.000728
ORF1ab/nsp16238Q238HcaGcaT11B.1.214.20.0006
ORF1ab/nsp16238Q238delCAG---11B.1.214.20.0006
ORF1ab/nsp16238Q238HcaGcaT11B.1.2210.000071
ORF1ab/nsp16238Q238ECagGag11B.1.2210.000071
ORF1ab/nsp16238Q238XCagTag11B.1.2340.000132
ORF1ab/nsp16238Q238RcAgcGg11B.1.2340.000132
ORF1ab/nsp16238Q238HcaGcaT11B.1.2390.001221
ORF1ab/nsp16238Q238NCaGAaT11B.1.2420.018868
ORF1ab/nsp16238Q238XCagTag11B.1.2430.00007
ORF1ab/nsp16238Q238QcaGcaA11B.1.2430.00007
ORF1ab/nsp16238Q238HcaGcaT11B.1.2470.014925
ORF1ab/nsp16238Q238XCagTag11B.1.3190.003049
ORF1ab/nsp16238Q238QcaGcaA11B.1.3250.006897
ORF1ab/nsp16238Q238QcaGcaA11B.1.3500.002933
ORF1ab/nsp16238Q238delCAG---11B.1.3510.00003
ORF1ab/nsp16238Q238KCagAag11B.1.3510.00003
ORF1ab/nsp16238Q238PcAgcCg11B.1.3510.00003
ORF1ab/nsp16238Q238CCAGTGT11B.1.3510.00003
ORF1ab/nsp16238Q238NCaGAaT11B.1.360.000146
ORF1ab/nsp16238Q238SCAgTCg11B.1.36.10.00114
ORF1ab/nsp16238Q238PcAgcCg11B.1.36.10.00114
ORF1ab/nsp16238Q238HcaGcaT11B.1.36.170.000494
ORF1ab/nsp16238Q238HcaGcaT11B.1.36.290.000517
ORF1ab/nsp16238Q238delCAG---11B.1.36.290.000517
ORF1ab/nsp16238Q238RcAgcGg11B.1.36.380.001642
ORF1ab/nsp16238Q238HcaGcaT11B.1.36.70.004
ORF1ab/nsp16238Q238QcaGcaA11B.1.36.80.001
ORF1ab/nsp16238Q238HcaGcaT11B.1.390.003906
ORF1ab/nsp16238Q238QcaGcaA11B.1.3960.000706
ORF1ab/nsp16238Q238HcaGcaT11B.1.4000.000429
ORF1ab/nsp16238Q238HcaGcaT11B.1.4110.003704
ORF1ab/nsp16238Q238delCAG---11B.1.4150.014286
ORF1ab/nsp16238Q238LcAgcTg11B.1.4160.001269
ORF1ab/nsp16238Q238RcAgcGg11B.1.4160.001269
ORF1ab/nsp16238Q238HcaGcaT11B.1.416.10.001563
ORF1ab/nsp16238Q238delCAG---11B.1.416.10.001563
ORF1ab/nsp16238Q238HcaGcaT11B.1.4280.00102
ORF1ab/nsp16238Q238LcAgcTg11B.1.4290.000024
ORF1ab/nsp16238Q238ECagGag11B.1.4290.000024
ORF1ab/nsp16238Q238QcaGcaA11B.1.4320.011236
ORF1ab/nsp16238Q238HcaGcaT11B.1.4380.006536
ORF1ab/nsp16238Q238HcaGcaT11B.1.4700.001404
ORF1ab/nsp16238Q238HcaGcaT11B.1.4730.019231
ORF1ab/nsp16238Q238HcaGcaT11B.1.4970.000315
ORF1ab/nsp16238Q238QcaGcaA11B.1.5010.007353
ORF1ab/nsp16238Q238CCAGTGT11B.1.5250.000113
ORF1ab/nsp16238Q238RcAgcGg11B.1.5260.000024
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ORF1ab/nsp16238Q238HcaGcaT11B.1.5380.008065
ORF1ab/nsp16238Q238HcaGcaT11B.1.5590.025
ORF1ab/nsp16238Q238delCAG---11B.1.5610.000397
ORF1ab/nsp16238Q238HcaGcaT11B.1.5760.000907
ORF1ab/nsp16238Q238HcaGcaT11B.1.5770.000687
ORF1ab/nsp16238Q238QcaGcaA11B.1.5790.011236
ORF1ab/nsp16238Q238HcaGcaT11B.1.5800.004065
ORF1ab/nsp16238Q238XCagTag11B.1.5820.000491
ORF1ab/nsp16238Q238QcaGcaA11B.1.5820.000491
ORF1ab/nsp16238Q238QcaGcaA11B.1.5900.004545
ORF1ab/nsp16238Q238XCagTag11B.1.5950.000261
ORF1ab/nsp16238Q238delCAG---11B.1.5960.000087
ORF1ab/nsp16238Q238HcaGcaT11B.1.596.10.009346
ORF1ab/nsp16238Q238HcaGcaT11B.1.6090.000479
ORF1ab/nsp16238Q238delCAG---11B.1.617.10.000129
ORF1ab/nsp16238Q238delCAG---11B.1.6200.000946
ORF1ab/nsp16238Q238PcAgcCg11B.1.6230.000536
ORF1ab/nsp16238Q238HcaGcaT11B.1.6230.000536
ORF1ab/nsp16238Q238HcaGcaT11B.1.6270.00202
ORF1ab/nsp16238Q238HcaGcaT11B.1.6310.003367
ORF1ab/nsp16238Q238HcaGcaT11B.290.003509
ORF1ab/nsp16238Q238KCagAag11B.60.00091
ORF1ab/nsp16238Q238XCagTag11B.60.00091
ORF1ab/nsp16238Q238HcaGcaT11B.60.00091
ORF1ab/nsp16238Q238HcaGcaT11B.6.60.000889
ORF1ab/nsp16238Q238XCagTag11B.6.60.000889
ORF1ab/nsp16238Q238XCagTag11B.600.015873
ORF1ab/nsp16238Q238HcaGcaT11C.360.000911
ORF1ab/nsp16238Q238LcAgcTg11C.370.000116
ORF1ab/nsp16238Q238delCAG---11C.370.000116
ORF1ab/nsp16238Q238XCagTag11D.20.000075
ORF1ab/nsp16238Q238ECagGag11P.10.000016
ORF1ab/nsp16238Q238RcAgcGg11P.10.000016
ORF1ab/nsp16238Q238delCAG---11P.1.10.000318
ORF1ab/nsp16238Q238LcAgcTg11P.1.100.000269
ORF1ab/nsp16238Q238HcaGcaT11P.1.120.000484
ORF1ab/nsp16238Q238HcaGcaT11P.1.70.000319
ORF1ab/nsp16238Q238HcaGcaT11P.20.000187
ORF1ab/nsp16238Q238delCAG---11Q.20.000613
ORF1ab/nsp16238Q238HcaGcaT11Q.40.000455