CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 237

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16237I237II7035IsynatTatA333217770.53331321367-21369
ORF1ab/nsp16237I237II7035IsynatTatC333215550.46668721367-21369
ORF1ab/nsp16237I237TI7035TnonsynaTtaCt2532490.9841921367-21369
ORF1ab/nsp16237I237TI7035TnonsynaTTaCA25330.011857721367-21369
ORF1ab/nsp16237I237TI7035TnonsynaTTaCC25310.0039525721367-21369
ORF1ab/nsp16237I237FI7035FnonsynAttTtt192192121367-21369
ORF1ab/nsp16237I237VI7035VnonsynAttGtt1641630.99390221367-21369
ORF1ab/nsp16237I237VI7035VnonsynAtTGtG16410.0060975621367-21369
ORF1ab/nsp16237I237delI7035deldelATT---104104121367-21369
ORF1ab/nsp16237I237LI7035LnonsynAttCtt3737121367-21369
ORF1ab/nsp16237I237SI7035SnonsynaTtaGt35330.94285721367-21369
ORF1ab/nsp16237I237SI7035SnonsynATtTCt3520.057142921367-21369
ORF1ab/nsp16237I237MI7035MnonsynatTatG2727121367-21369
ORF1ab/nsp16237I237NI7035NnonsynaTtaAt1010121367-21369
ORF1ab/nsp16237I237HI7035HnonsynATtCAt88121367-21369
ORF1ab/nsp16237I237del1I7035del1delaTta-t320.66666721367-21369
ORF1ab/nsp16237I237del1I7035del1delAtt-tt310.33333321367-21369
ORF1ab/nsp16237I237del2I7035del2delATt--t22121367-21369
ORF1ab/nsp16237I237CI7035CnonsynATtTGt11121367-21369

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16237I237IatTatA17773332All0.00034
ORF1ab/nsp16237I237IatTatC15553332All0.000297
ORF1ab/nsp16237I237IatTatC10291029AY.230.071772
ORF1ab/nsp16237I237IatTatA927927B.1.1.3330.997847
ORF1ab/nsp16237I237IatTatA785829B.1.1.70.000703
ORF1ab/nsp16237I237IatTatC44829B.1.1.70.000039
ORF1ab/nsp16237I237TaTtaCt249253All0.000048
ORF1ab/nsp16237I237TaTTaCA3253All0.000001
ORF1ab/nsp16237I237TaTTaCC1253All0
ORF1ab/nsp16237I237FAttTtt192192All0.000037
ORF1ab/nsp16237I237VAttGtt163164All0.000031
ORF1ab/nsp16237I237VAtTGtG1164All0
ORF1ab/nsp16237I237IatTatC108109D.20.008104
ORF1ab/nsp16237I237IatTatA1109D.20.000075
ORF1ab/nsp16237I237delATT---104104All0.00002
ORF1ab/nsp16237I237VAttGtt7171AY.4.20.00154
ORF1ab/nsp16237I237TaTtaCt6869B.1.1.70.000061
ORF1ab/nsp16237I237TaTTaCC169B.1.1.70.000001
ORF1ab/nsp16237I237FAttTtt6363B.1.1.70.000056
ORF1ab/nsp16237I237IatTatC5959B.1.2220.099831
ORF1ab/nsp16237I237IatTatC5557AY.1030.000341
ORF1ab/nsp16237I237IatTatA257AY.1030.000012
ORF1ab/nsp16237I237FAttTtt4646AY.260.001302
ORF1ab/nsp16237I237FAttTtt4545B.1.5260.001058
ORF1ab/nsp16237I237LAttCtt3737All0.000007
ORF1ab/nsp16237I237TaTtaCt3636AY.40.000056
ORF1ab/nsp16237I237SaTtaGt3335All0.000006
ORF1ab/nsp16237I237SATtTCt235All0
ORF1ab/nsp16237I237IatTatC3435AY.40.000053
ORF1ab/nsp16237I237IatTatA135AY.40.000002
ORF1ab/nsp16237I237IatTatC1929P.1.140.000908
ORF1ab/nsp16237I237IatTatA1029P.1.140.000478
ORF1ab/nsp16237I237VAttGtt2828B.1.1.70.000025
ORF1ab/nsp16237I237TaTtaCt2828P.10.000441
ORF1ab/nsp16237I237MatTatG2727All0.000005
ORF1ab/nsp16237I237IatTatC2424AY.30.000239
ORF1ab/nsp16237I237IatTatA2324Q.80.003793
ORF1ab/nsp16237I237IatTatC124Q.80.000165
ORF1ab/nsp16237I237IatTatC2021AY.430.000089
ORF1ab/nsp16237I237IatTatA121AY.430.000004
ORF1ab/nsp16237I237TaTtaCt1818AY.1030.000112
ORF1ab/nsp16237I237SaTtaGt1818B.1.4700.025281
ORF1ab/nsp16237I237IatTatC1718B.1.617.20.000064
ORF1ab/nsp16237I237IatTatA118B.1.617.20.000004
ORF1ab/nsp16237I237TaTtaCt1515B.1.4290.000353
ORF1ab/nsp16237I237IatTatC1515B.1.621.10.007587
ORF1ab/nsp16237I237TaTtaCt1414B.1.1.630.005401
ORF1ab/nsp16237I237IatTatC1213AY.250.000072
ORF1ab/nsp16237I237IatTatA113AY.250.000006
ORF1ab/nsp16237I237LAttCtt1212AY.500.009592
ORF1ab/nsp16237I237delATT---1212B.1.20.000106
ORF1ab/nsp16237I237delATT---1111B.1.1.70.00001
ORF1ab/nsp16237I237NaTtaAt1010All0.000002
ORF1ab/nsp16237I237IatTatC1010AY.1160.002868
ORF1ab/nsp16237I237IatTatC1010AY.240.00431
ORF1ab/nsp16237I237IatTatA810B.1.10.000145
ORF1ab/nsp16237I237IatTatC210B.1.10.000036
ORF1ab/nsp16237I237IatTatC810P.10.000126
ORF1ab/nsp16237I237IatTatA210P.10.000032
ORF1ab/nsp16237I237delATT---99B.10.000082
ORF1ab/nsp16237I237HATtCAt88All0.000002
ORF1ab/nsp16237I237HATtCAt88AY.440.000049
ORF1ab/nsp16237I237LAttCtt88B.1.20.00007
ORF1ab/nsp16237I237TaTtaCt88B.1.258.170.000832
ORF1ab/nsp16237I237FAttTtt88B.1.3510.000238
ORF1ab/nsp16237I237VAttGtt88P.10.000126
ORF1ab/nsp16237I237delATT---77AY.250.000042
ORF1ab/nsp16237I237IatTatC77AY.440.000043
ORF1ab/nsp16237I237IatTatC77B.10.000064
ORF1ab/nsp16237I237TaTtaCt77B.1.1770.000092
ORF1ab/nsp16237I237VAttGtt66AY.1200.000223
ORF1ab/nsp16237I237delATT---66AY.430.000027
ORF1ab/nsp16237I237IatTatC46B.1.20.000035
ORF1ab/nsp16237I237IatTatA26B.1.20.000018
ORF1ab/nsp16237I237MatTatG66B.1.4290.000141
ORF1ab/nsp16237I237VAttGtt66B.1.617.20.000023
ORF1ab/nsp16237I237IatTatC55AY.1060.001674
ORF1ab/nsp16237I237VAttGtt55B.1.4290.000118
ORF1ab/nsp16237I237delATT---55B.1.5250.000566
ORF1ab/nsp16237I237TaTtaCt55B.6.60.004444
ORF1ab/nsp16237I237FAttTtt55P.10.000079
ORF1ab/nsp16237I237delATT---55P.10.000079
ORF1ab/nsp16237I237IatTatC44AY.1020.000106
ORF1ab/nsp16237I237FAttTtt44AY.40.000006
ORF1ab/nsp16237I237VAttGtt44AY.40.000006
ORF1ab/nsp16237I237IatTatC44AY.4.20.000087
ORF1ab/nsp16237I237FAttTtt44B.10.000037
ORF1ab/nsp16237I237SaTtaGt44B.1.1.70.000004
ORF1ab/nsp16237I237MatTatG44B.1.1.70.000004
ORF1ab/nsp16237I237VAttGtt44B.1.2210.000284
ORF1ab/nsp16237I237delATT---44B.1.617.20.000015
ORF1ab/nsp16237I237del1aTta-t23All0
ORF1ab/nsp16237I237del1Att-tt13All0
ORF1ab/nsp16237I237TaTtaCt33AY.160.001139
ORF1ab/nsp16237I237IatTatC33AY.200.000117
ORF1ab/nsp16237I237SaTtaGt33AY.30.00003
ORF1ab/nsp16237I237IatTatC33AY.330.0002
ORF1ab/nsp16237I237delATT---33AY.40.000005
ORF1ab/nsp16237I237MatTatG33AY.4.20.000065
ORF1ab/nsp16237I237TaTtaCt33AY.440.000018
ORF1ab/nsp16237I237LAttCtt33AY.720.004082
ORF1ab/nsp16237I237TaTtaCt33B.10.000027
ORF1ab/nsp16237I237TaTtaCt23B.1.10.000036
ORF1ab/nsp16237I237TaTTaCA13B.1.10.000018
ORF1ab/nsp16237I237TaTtaCt33B.1.1.280.000934
ORF1ab/nsp16237I237delATT---33B.1.1.5190.000119
ORF1ab/nsp16237I237IatTatA33B.1.1770.00004
ORF1ab/nsp16237I237MatTatG33B.1.20.000026
ORF1ab/nsp16237I237MatTatG33B.1.258.170.000312
ORF1ab/nsp16237I237VAttGtt33B.1.3510.000089
ORF1ab/nsp16237I237LAttCtt33B.1.617.20.000011
ORF1ab/nsp16237I237TaTtaCt33C.370.000348
ORF1ab/nsp16237I237VAttGtt33P.1.140.000143
ORF1ab/nsp16237I237delATT---220.111111
ORF1ab/nsp16237I237delATT---22A.2.40.006734
ORF1ab/nsp16237I237del2ATt--t22All0
ORF1ab/nsp16237I237TaTtaCt22AY.1020.000053
ORF1ab/nsp16237I237IatTatC22AY.1130.000285
ORF1ab/nsp16237I237IatTatC22AY.1190.000071
ORF1ab/nsp16237I237FAttTtt22AY.300.000791
ORF1ab/nsp16237I237delATT---22AY.330.000134
ORF1ab/nsp16237I237VAttGtt22AY.390.000049
ORF1ab/nsp16237I237IatTatC12AY.390.000025
ORF1ab/nsp16237I237IatTatA12AY.390.000025
ORF1ab/nsp16237I237TaTtaCt22AY.4.20.000043
ORF1ab/nsp16237I237IatTatC22AY.4.30.001684
ORF1ab/nsp16237I237IatTatC22AY.450.000243
ORF1ab/nsp16237I237IatTatC22AY.5.40.000553
ORF1ab/nsp16237I237MatTatG22AY.60.000082
ORF1ab/nsp16237I237IatTatC22AY.690.000373
ORF1ab/nsp16237I237VAttGtt22AY.80.001212
ORF1ab/nsp16237I237VAttGtt22AY.9.20.000073
ORF1ab/nsp16237I237IatTatC22AY.9.20.000073
ORF1ab/nsp16237I237IatTatC22AY.920.000575
ORF1ab/nsp16237I237IatTatC22B.1.1.390.001019
ORF1ab/nsp16237I237NaTtaAt22B.1.1.70.000002
ORF1ab/nsp16237I237IatTatC22B.1.1.700.000682
ORF1ab/nsp16237I237delATT---22B.1.1770.000026
ORF1ab/nsp16237I237SaTtaGt12B.1.1770.000013
ORF1ab/nsp16237I237SATtTCt12B.1.1770.000013
ORF1ab/nsp16237I237VAttGtt22B.1.20.000018
ORF1ab/nsp16237I237delATT---22B.1.2580.000133
ORF1ab/nsp16237I237MatTatG22B.1.3510.000059
ORF1ab/nsp16237I237IatTatC22B.1.4110.007407
ORF1ab/nsp16237I237SaTtaGt22B.1.4970.00063
ORF1ab/nsp16237I237LAttCtt22B.1.5640.000852
ORF1ab/nsp16237I237FAttTtt22B.1.617.20.000008
ORF1ab/nsp16237I237TaTtaCt22B.1.617.20.000008
ORF1ab/nsp16237I237TaTtaCt22B.1.6230.001073
ORF1ab/nsp16237I237VAttGtt22B.1.6370.000146
ORF1ab/nsp16237I237IatTatC12P.1.150.000232
ORF1ab/nsp16237I237IatTatA12P.1.150.000232
ORF1ab/nsp16237I237IatTatC22P.1.20.002312
ORF1ab/nsp16237I237IatTatA22P.20.000373
ORF1ab/nsp16237I237NaTtaAt11A.20.000662
ORF1ab/nsp16237I237TaTtaCt11A.20.000662
ORF1ab/nsp16237I237VAttGtt11A.280.002646
ORF1ab/nsp16237I237CATtTGt11All0
ORF1ab/nsp16237I237IatTatA11AP.10.001502
ORF1ab/nsp16237I237IatTatC11AY.1000.000046
ORF1ab/nsp16237I237delATT---11AY.1000.000046
ORF1ab/nsp16237I237SaTtaGt11AY.1030.000006
ORF1ab/nsp16237I237delATT---11AY.1080.001103
ORF1ab/nsp16237I237delATT---11AY.1100.000113
ORF1ab/nsp16237I237NaTtaAt11AY.1100.000113
ORF1ab/nsp16237I237MatTatG11AY.1110.000183
ORF1ab/nsp16237I237delATT---11AY.1180.000063
ORF1ab/nsp16237I237MatTatG11AY.1180.000063
ORF1ab/nsp16237I237FAttTtt11AY.1190.000035
ORF1ab/nsp16237I237delATT---11AY.1190.000035
ORF1ab/nsp16237I237TaTtaCt11AY.1190.000035
ORF1ab/nsp16237I237VAttGtt11AY.1190.000035
ORF1ab/nsp16237I237IatTatC11AY.130.000161
ORF1ab/nsp16237I237FAttTtt11AY.160.00038
ORF1ab/nsp16237I237VAttGtt11AY.200.000039
ORF1ab/nsp16237I237IatTatC11AY.210.001898
ORF1ab/nsp16237I237TaTtaCt11AY.230.00007
ORF1ab/nsp16237I237SaTtaGt11AY.250.000006
ORF1ab/nsp16237I237FAttTtt11AY.250.000006
ORF1ab/nsp16237I237TaTtaCt11AY.270.000065
ORF1ab/nsp16237I237IatTatA11AY.290.000016
ORF1ab/nsp16237I237VAttGtt11AY.290.000016
ORF1ab/nsp16237I237FAttTtt11AY.30.00001
ORF1ab/nsp16237I237VAttGtt11AY.30.00001
ORF1ab/nsp16237I237TaTtaCt11AY.3.10.000085
ORF1ab/nsp16237I237VAttGtt11AY.3.10.000085
ORF1ab/nsp16237I237IatTatC11AY.320.000532
ORF1ab/nsp16237I237IatTatA11AY.340.000097
ORF1ab/nsp16237I237IatTatC11AY.34.10.00051
ORF1ab/nsp16237I237IatTatA11AY.360.000148
ORF1ab/nsp16237I237FAttTtt11AY.370.000316
ORF1ab/nsp16237I237LAttCtt11AY.370.000316
ORF1ab/nsp16237I237TaTtaCt11AY.390.000025
ORF1ab/nsp16237I237MatTatG11AY.40.000002
ORF1ab/nsp16237I237SaTtaGt11AY.40.000002
ORF1ab/nsp16237I237delATT---11AY.4.20.000022
ORF1ab/nsp16237I237SaTtaGt11AY.4.20.000022
ORF1ab/nsp16237I237delATT---11AY.420.00004
ORF1ab/nsp16237I237del2ATt--t11AY.420.00004
ORF1ab/nsp16237I237FAttTtt11AY.430.000004
ORF1ab/nsp16237I237VAtTGtG11AY.430.000004
ORF1ab/nsp16237I237FAttTtt11AY.440.000006
ORF1ab/nsp16237I237LAttCtt11AY.440.000006
ORF1ab/nsp16237I237IatTatC11AY.460.000104
ORF1ab/nsp16237I237NaTtaAt11AY.460.000104
ORF1ab/nsp16237I237TaTtaCt11AY.46.40.000165
ORF1ab/nsp16237I237TaTtaCt11AY.50.000021
ORF1ab/nsp16237I237IatTatC11AY.50.000021
ORF1ab/nsp16237I237VAttGtt11AY.50.000021
ORF1ab/nsp16237I237delATT---11AY.540.000095
ORF1ab/nsp16237I237TaTtaCt11AY.550.000917
ORF1ab/nsp16237I237TaTtaCt11AY.570.000656
ORF1ab/nsp16237I237delATT---11AY.590.00053
ORF1ab/nsp16237I237delATT---11AY.670.000464
ORF1ab/nsp16237I237delATT---11AY.680.000274
ORF1ab/nsp16237I237IatTatC11AY.730.000665
ORF1ab/nsp16237I237IatTatC11AY.800.001129
ORF1ab/nsp16237I237IatTatA11AY.840.000437
ORF1ab/nsp16237I237TaTtaCt11AY.9.10.000084
ORF1ab/nsp16237I237LAttCtt11AY.9.20.000037
ORF1ab/nsp16237I237TaTtaCt11AY.910.00073
ORF1ab/nsp16237I237delATT---11AY.950.000761
ORF1ab/nsp16237I237SaTtaGt11B0.000128
ORF1ab/nsp16237I237VAttGtt11B.10.000009
ORF1ab/nsp16237I237CATtTGt11B.10.000009
ORF1ab/nsp16237I237LAttCtt11B.10.000009
ORF1ab/nsp16237I237delATT---11B.1.10.000018
ORF1ab/nsp16237I237NaTtaAt11B.1.10.000018
ORF1ab/nsp16237I237del1aTta-t11B.1.10.000018
ORF1ab/nsp16237I237MatTatG11B.1.1.1840.058824
ORF1ab/nsp16237I237TaTtaCt11B.1.1.2160.00089
ORF1ab/nsp16237I237FAttTtt11B.1.1.2160.00089
ORF1ab/nsp16237I237IatTatC11B.1.1.2200.001859
ORF1ab/nsp16237I237LAttCtt11B.1.1.2220.000204
ORF1ab/nsp16237I237IatTatC11B.1.1.2410.00207
ORF1ab/nsp16237I237TaTtaCt11B.1.1.2730.006757
ORF1ab/nsp16237I237IatTatA11B.1.1.280.000311
ORF1ab/nsp16237I237VAttGtt11B.1.1.2840.000107
ORF1ab/nsp16237I237TaTtaCt11B.1.1.3010.001179
ORF1ab/nsp16237I237delATT---11B.1.1.3060.000438
ORF1ab/nsp16237I237IatTatC11B.1.1.310.066667
ORF1ab/nsp16237I237IatTatC11B.1.1.4110.014706
ORF1ab/nsp16237I237LAttCtt11B.1.1.4330.001425
ORF1ab/nsp16237I237delATT---11B.1.1.460.004367
ORF1ab/nsp16237I237VAttGtt11B.1.1.500.000679
ORF1ab/nsp16237I237IatTatC11B.1.1.5190.00004
ORF1ab/nsp16237I237del1Att-tt11B.1.1.5190.00004
ORF1ab/nsp16237I237LAttCtt11B.1.1.70.000001
ORF1ab/nsp16237I237del2ATt--t11B.1.1.70.000001
ORF1ab/nsp16237I237LAttCtt11B.1.1490.003425
ORF1ab/nsp16237I237VAttGtt11B.1.1770.000013
ORF1ab/nsp16237I237NaTtaAt11B.1.1770.000013
ORF1ab/nsp16237I237NaTtaAt11B.1.177.210.000076
ORF1ab/nsp16237I237IatTatC11B.1.177.480.003125
ORF1ab/nsp16237I237LAttCtt11B.1.177.570.000281
ORF1ab/nsp16237I237delATT---11B.1.177.680.015152
ORF1ab/nsp16237I237TaTtaCt11B.1.20.000009
ORF1ab/nsp16237I237FAttTtt11B.1.20.000009
ORF1ab/nsp16237I237NaTtaAt11B.1.20.000009
ORF1ab/nsp16237I237delATT---11B.1.214.20.0006
ORF1ab/nsp16237I237IatTatC11B.1.221.30.000833
ORF1ab/nsp16237I237TaTtaCt11B.1.2340.000132
ORF1ab/nsp16237I237TaTTaCA11B.1.2420.018868
ORF1ab/nsp16237I237TaTtaCt11B.1.2580.000067
ORF1ab/nsp16237I237FAttTtt11B.1.258.110.000396
ORF1ab/nsp16237I237TaTtaCt11B.1.3110.000275
ORF1ab/nsp16237I237IatTatC11B.1.3290.000608
ORF1ab/nsp16237I237delATT---11B.1.3510.00003
ORF1ab/nsp16237I237IatTatC11B.1.3510.00003
ORF1ab/nsp16237I237TaTTaCA11B.1.360.000146
ORF1ab/nsp16237I237IatTatC11B.1.360.000146
ORF1ab/nsp16237I237SATtTCt11B.1.36.10.00114
ORF1ab/nsp16237I237delATT---11B.1.36.290.000517
ORF1ab/nsp16237I237IatTatC11B.1.4000.000429
ORF1ab/nsp16237I237delATT---11B.1.4150.014286
ORF1ab/nsp16237I237TaTtaCt11B.1.4160.001269
ORF1ab/nsp16237I237delATT---11B.1.416.10.001563
ORF1ab/nsp16237I237FAttTtt11B.1.4970.000315
ORF1ab/nsp16237I237IatTatC11B.1.5210.004975
ORF1ab/nsp16237I237VAttGtt11B.1.5250.000113
ORF1ab/nsp16237I237delATT---11B.1.5260.000024
ORF1ab/nsp16237I237TaTtaCt11B.1.5260.000024
ORF1ab/nsp16237I237IatTatC11B.1.5260.000024
ORF1ab/nsp16237I237delATT---11B.1.5610.000397
ORF1ab/nsp16237I237TaTtaCt11B.1.5640.000426
ORF1ab/nsp16237I237VAttGtt11B.1.5960.000087
ORF1ab/nsp16237I237delATT---11B.1.5960.000087
ORF1ab/nsp16237I237delATT---11B.1.617.10.000129
ORF1ab/nsp16237I237VAttGtt11B.1.617.10.000129
ORF1ab/nsp16237I237NaTtaAt11B.1.617.10.000129
ORF1ab/nsp16237I237delATT---11B.1.6200.000946
ORF1ab/nsp16237I237IatTatC11B.1.6210.000089
ORF1ab/nsp16237I237IatTatC11C.370.000116
ORF1ab/nsp16237I237delATT---11C.370.000116
ORF1ab/nsp16237I237TaTtaCt11D.20.000075
ORF1ab/nsp16237I237del1aTta-t11D.20.000075
ORF1ab/nsp16237I237delATT---11P.1.10.000318
ORF1ab/nsp16237I237IatTatC11P.1.120.000484
ORF1ab/nsp16237I237TaTtaCt11P.1.170.000162
ORF1ab/nsp16237I237VAttGtt11Q.10.000126
ORF1ab/nsp16237I237FAttTtt11Q.10.000126
ORF1ab/nsp16237I237delATT---11Q.20.000613
ORF1ab/nsp16237I237TaTtaCt11Q.80.000165
ORF1ab/nsp16237I237FAttTtt11Q.80.000165