CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 236 & Codon = ccG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16236P236PP7034PsynccAccG145112780.88077221364-21366

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16236P236PccAccG12781451All0.000244
ORF1ab/nsp16236P236PccAccG11201122AY.250.006737
ORF1ab/nsp16236P236PccAccG3349B.1.1.70.00003
ORF1ab/nsp16236P236PccAccG1847B.1.617.20.000068
ORF1ab/nsp16236P236PccAccG3739B.1.20.000326
ORF1ab/nsp16236P236PccAccG226AY.430.000009
ORF1ab/nsp16236P236PccAccG112AY.30.00001
ORF1ab/nsp16236P236PccAccG511AY.40.000008
ORF1ab/nsp16236P236PccAccG88AY.3.10.000682
ORF1ab/nsp16236P236PccAccG55B.1.1.3070.012658
ORF1ab/nsp16236P236PccAccG44AY.440.000024
ORF1ab/nsp16236P236PccAccG34B.1.10.000054
ORF1ab/nsp16236P236PccAccG33AY.1170.000254
ORF1ab/nsp16236P236PccAccG13AY.1190.000035
ORF1ab/nsp16236P236PccAccG33AY.9.10.000251
ORF1ab/nsp16236P236PccAccG22AY.1090.001479
ORF1ab/nsp16236P236PccAccG22AY.390.000049
ORF1ab/nsp16236P236PccAccG22AY.540.000191
ORF1ab/nsp16236P236PccAccG22AY.610.00021
ORF1ab/nsp16236P236PccAccG22AY.750.000112
ORF1ab/nsp16236P236PccAccG22B.1.1.250.001137
ORF1ab/nsp16236P236PccAccG22B.1.1770.000026
ORF1ab/nsp16236P236PccAccG22B.1.2340.000264
ORF1ab/nsp16236P236PccAccG12B.1.2430.00007
ORF1ab/nsp16236P236PccAccG22P.1.140.000096
ORF1ab/nsp16236P236PccAccG11AY.140.000088
ORF1ab/nsp16236P236PccAccG11AY.200.000039
ORF1ab/nsp16236P236PccAccG11AY.270.000065
ORF1ab/nsp16236P236PccAccG11AY.290.000016
ORF1ab/nsp16236P236PccAccG11AY.4.20.000022
ORF1ab/nsp16236P236PccAccG11AY.450.000122
ORF1ab/nsp16236P236PccAccG11AY.460.000104
ORF1ab/nsp16236P236PccAccG11AY.470.000031
ORF1ab/nsp16236P236PccAccG11AY.620.000436
ORF1ab/nsp16236P236PccAccG11AY.720.001361
ORF1ab/nsp16236P236PccAccG11B.1.1.2140.000055
ORF1ab/nsp16236P236PccAccG11B.1.1.2220.000204
ORF1ab/nsp16236P236PccAccG11B.1.1.2840.000107
ORF1ab/nsp16236P236PccAccG11B.1.1.2940.001266
ORF1ab/nsp16236P236PccAccG11B.1.36.10.00114
ORF1ab/nsp16236P236PccAccG11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.