CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 236 & Codon = cTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16236P236LP7034LnonsyncCacTa440644010.99886521364-21366

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16236P236LcCacTa44014406All0.000842
ORF1ab/nsp16236P236LcCacTa10941095B.1.177.210.083658
ORF1ab/nsp16236P236LcCacTa513513B.1.1.70.000459
ORF1ab/nsp16236P236LcCacTa290290AY.1190.010239
ORF1ab/nsp16236P236LcCacTa267267B.1.5240.375527
ORF1ab/nsp16236P236LcCacTa258258AY.40.000402
ORF1ab/nsp16236P236LcCacTa224225B.10.002052
ORF1ab/nsp16236P236LcCacTa117117B.1.617.20.000441
ORF1ab/nsp16236P236LcCacTa9898AY.250.000589
ORF1ab/nsp16236P236LcCacTa8181B.1.258.110.032105
ORF1ab/nsp16236P236LcCacTa7676B.1.1770.001001
ORF1ab/nsp16236P236LcCacTa7171AY.430.000315
ORF1ab/nsp16236P236LcCacTa6969AY.1030.000428
ORF1ab/nsp16236P236LcCacTa6868AY.440.000414
ORF1ab/nsp16236P236LcCacTa6060B.1.1600.001871
ORF1ab/nsp16236P236LcCacTa5757P.20.010638
ORF1ab/nsp16236P236LcCacTa5252AY.30.000517
ORF1ab/nsp16236P236LcCacTa4848B.1.2580.003194
ORF1ab/nsp16236P236LcCacTa4747AY.75.10.008475
ORF1ab/nsp16236P236LcCacTa4646B.1.2340.006069
ORF1ab/nsp16236P236LcCacTa3636P.10.000567
ORF1ab/nsp16236P236LcCacTa3030B.1.3490.021444
ORF1ab/nsp16236P236LcCacTa2626AY.46.60.001877
ORF1ab/nsp16236P236LcCacTa2525AY.50.000516
ORF1ab/nsp16236P236LcCacTa2424B.1.4290.000565
ORF1ab/nsp16236P236LcCacTa2323B.1.20.000203
ORF1ab/nsp16236P236LcCacTa2222B.1.10.000399
ORF1ab/nsp16236P236LcCacTa2121AY.330.001402
ORF1ab/nsp16236P236LcCacTa2020B.1.1.2220.00408
ORF1ab/nsp16236P236LcCacTa1818AY.390.000445
ORF1ab/nsp16236P236LcCacTa1818AY.470.00056
ORF1ab/nsp16236P236LcCacTa1717AY.200.000661
ORF1ab/nsp16236P236LcCacTa1113AY.290.000174
ORF1ab/nsp16236P236LcCacTa1313B.1.3110.003569
ORF1ab/nsp16236P236LcCacTa1212AY.1020.000318
ORF1ab/nsp16236P236LcCacTa1212AY.340.001164
ORF1ab/nsp16236P236LcCacTa1212AY.980.000948
ORF1ab/nsp16236P236LcCacTa1212B.1.5270.044444
ORF1ab/nsp16236P236LcCacTa1111AY.9.10.000921
ORF1ab/nsp16236P236LcCacTa1111B.1.1.2140.00061
ORF1ab/nsp16236P236LcCacTa1010AY.1200.000372
ORF1ab/nsp16236P236LcCacTa1010B.1.1.3170.004117
ORF1ab/nsp16236P236LcCacTa1010B.1.177.790.023419
ORF1ab/nsp16236P236LcCacTa1010B.1.258.170.00104
ORF1ab/nsp16236P236LcCacTa1010B.1.4270.000505
ORF1ab/nsp16236P236LcCacTa99AY.39.10.000357
ORF1ab/nsp16236P236LcCacTa99AY.4.2.10.001341
ORF1ab/nsp16236P236LcCacTa99AY.9.20.000331
ORF1ab/nsp16236P236LcCacTa99AY.98.10.000436
ORF1ab/nsp16236P236LcCacTa99B.1.1.2840.000967
ORF1ab/nsp16236P236LcCacTa99B.1.5260.000212
ORF1ab/nsp16236P236LcCacTa99B.1.5650.007293
ORF1ab/nsp16236P236LcCacTa88AY.420.000322
ORF1ab/nsp16236P236LcCacTa88AY.750.000448
ORF1ab/nsp16236P236LcCacTa88B.1.351.20.002421
ORF1ab/nsp16236P236LcCacTa88P.1.140.000382
ORF1ab/nsp16236P236LcCacTa88P.1.70.002554
ORF1ab/nsp16236P236LcCacTa77AY.1210.000947
ORF1ab/nsp16236P236LcCacTa77AY.60.000288
ORF1ab/nsp16236P236LcCacTa77B.1.1.630.002701
ORF1ab/nsp16236P236LcCacTa77B.1.177.170.005747
ORF1ab/nsp16236P236LcCacTa77B.1.177.570.001967
ORF1ab/nsp16236P236LcCacTa77Q.30.001015
ORF1ab/nsp16236P236LcCacTa66AY.260.00017
ORF1ab/nsp16236P236LcCacTa66AY.360.000889
ORF1ab/nsp16236P236LcCacTa66AY.99.20.000553
ORF1ab/nsp16236P236LcCacTa66B.1.1.3260.010563
ORF1ab/nsp16236P236LcCacTa66B.1.5960.000523
ORF1ab/nsp16236P236LcCacTa66P.1.150.001394
ORF1ab/nsp16236P236LcCacTa55AY.270.000324
ORF1ab/nsp16236P236LcCacTa55B.1.3690.001426
ORF1ab/nsp16236P236LcCacTa55B.1.5610.001985
ORF1ab/nsp16236P236LcCacTa44AY.1000.000184
ORF1ab/nsp16236P236LcCacTa44AY.4.20.000087
ORF1ab/nsp16236P236LcCacTa44AY.460.000416
ORF1ab/nsp16236P236LcCacTa44B0.000511
ORF1ab/nsp16236P236LcCacTa44B.1.1.700.001364
ORF1ab/nsp16236P236LcCacTa44B.1.1460.016949
ORF1ab/nsp16236P236LcCacTa44B.1.160.160.003717
ORF1ab/nsp16236P236LcCacTa44B.1.2430.000278
ORF1ab/nsp16236P236LcCacTa44B.1.3510.000119
ORF1ab/nsp16236P236LcCacTa44B.1.4280.004082
ORF1ab/nsp16236P236LcCacTa44B.1.438.10.000429
ORF1ab/nsp16236P236LcCacTa44C.30.10.026846
ORF1ab/nsp16236P236LcCacTa44D.20.0003
ORF1ab/nsp16236P236LcCacTa33AY.1130.000427
ORF1ab/nsp16236P236LcCacTa33AY.450.000365
ORF1ab/nsp16236P236LcCacTa33B.1.1.2100.017143
ORF1ab/nsp16236P236LcCacTa33B.1.1.2770.002276
ORF1ab/nsp16236P236LcCacTa33B.1.177.120.000455
ORF1ab/nsp16236P236LcCacTa33B.1.258.140.002941
ORF1ab/nsp16236P236LcCacTa33B.1.36.180.001261
ORF1ab/nsp16236P236LcCacTa33B.1.36.90.009646
ORF1ab/nsp16236P236LcCacTa33B.1.5090.002597
ORF1ab/nsp16236P236LcCacTa33B.1.5750.00091
ORF1ab/nsp16236P236LcCacTa33B.1.6210.000266
ORF1ab/nsp16236P236LcCacTa33C.140.012987
ORF1ab/nsp16236P236LcCacTa220.111111
ORF1ab/nsp16236P236LcCacTa22AY.1060.00067
ORF1ab/nsp16236P236LcCacTa22AY.1170.000169
ORF1ab/nsp16236P236LcCacTa22AY.230.000139
ORF1ab/nsp16236P236LcCacTa22AY.23.10.000835
ORF1ab/nsp16236P236LcCacTa22AY.46.10.002053
ORF1ab/nsp16236P236LcCacTa22AY.46.40.000329
ORF1ab/nsp16236P236LcCacTa22AY.670.000929
ORF1ab/nsp16236P236LcCacTa22AY.7.10.000225
ORF1ab/nsp16236P236LcCacTa22B.1.1.1380.012121
ORF1ab/nsp16236P236LcCacTa22B.1.1.1570.001826
ORF1ab/nsp16236P236LcCacTa22B.1.1.270.011299
ORF1ab/nsp16236P236LcCacTa22B.1.1.3700.025316
ORF1ab/nsp16236P236LcCacTa22B.1.1.4160.00181
ORF1ab/nsp16236P236LcCacTa22B.1.1.5190.000079
ORF1ab/nsp16236P236LcCacTa22B.1.1.980.037037
ORF1ab/nsp16236P236LcCacTa22B.1.1390.001466
ORF1ab/nsp16236P236LcCacTa22B.1.1650.02381
ORF1ab/nsp16236P236LcCacTa22B.1.177.160.001329
ORF1ab/nsp16236P236LcCacTa22B.1.177.40.000422
ORF1ab/nsp16236P236LcCacTa22B.1.177.820.000955
ORF1ab/nsp16236P236LcCacTa22B.1.2060.001631
ORF1ab/nsp16236P236LcCacTa22B.1.258.200.031746
ORF1ab/nsp16236P236LcCacTa22B.1.2650.002541
ORF1ab/nsp16236P236LcCacTa22B.1.3750.001639
ORF1ab/nsp16236P236LcCacTa22B.1.4690.00722
ORF1ab/nsp16236P236LcCacTa12B.1.4970.000315
ORF1ab/nsp16236P236LcCacTa22B.1.5820.000981
ORF1ab/nsp16236P236LcCacTa22B.1.6200.001892
ORF1ab/nsp16236P236LcCacTa22B.1.6310.006734
ORF1ab/nsp16236P236LcCacTa22B.1.6370.000146
ORF1ab/nsp16236P236LcCacTa22D.50.00995
ORF1ab/nsp16236P236LcCacTa22P.1.160.000748
ORF1ab/nsp16236P236LcCacTa22R.10.00018
ORF1ab/nsp16236P236LcCacTa11A.20.000662
ORF1ab/nsp16236P236LcCacTa11A.2.50.000499
ORF1ab/nsp16236P236LcCacTa11AD.20.000219
ORF1ab/nsp16236P236LcCacTa11AU.30.00211
ORF1ab/nsp16236P236LcCacTa11AY.1080.001103
ORF1ab/nsp16236P236LcCacTa11AY.110.001339
ORF1ab/nsp16236P236LcCacTa11AY.1100.000113
ORF1ab/nsp16236P236LcCacTa11AY.1110.000183
ORF1ab/nsp16236P236LcCacTa11AY.1180.000063
ORF1ab/nsp16236P236LcCacTa11AY.120.000316
ORF1ab/nsp16236P236LcCacTa11AY.120.10.000321
ORF1ab/nsp16236P236LcCacTa11AY.16.10.00047
ORF1ab/nsp16236P236LcCacTa11AY.190.00114
ORF1ab/nsp16236P236LcCacTa11AY.220.002092
ORF1ab/nsp16236P236LcCacTa11AY.29.10.000221
ORF1ab/nsp16236P236LcCacTa11AY.300.000396
ORF1ab/nsp16236P236LcCacTa11AY.4.10.000737
ORF1ab/nsp16236P236LcCacTa11AY.4.40.000409
ORF1ab/nsp16236P236LcCacTa11AY.4.50.000107
ORF1ab/nsp16236P236LcCacTa11AY.400.000964
ORF1ab/nsp16236P236LcCacTa11AY.5.30.000337
ORF1ab/nsp16236P236LcCacTa11AY.530.000288
ORF1ab/nsp16236P236LcCacTa11AY.540.000095
ORF1ab/nsp16236P236LcCacTa11AY.550.000917
ORF1ab/nsp16236P236LcCacTa11AY.590.00053
ORF1ab/nsp16236P236LcCacTa11AY.650.000533
ORF1ab/nsp16236P236LcCacTa11AY.690.000187
ORF1ab/nsp16236P236LcCacTa11AY.70.000196
ORF1ab/nsp16236P236LcCacTa11AY.710.000475
ORF1ab/nsp16236P236LcCacTa11AY.740.000116
ORF1ab/nsp16236P236LcCacTa11AY.840.000437
ORF1ab/nsp16236P236LcCacTa11AY.910.00073
ORF1ab/nsp16236P236LcCacTa11AY.930.000273
ORF1ab/nsp16236P236LcCacTa11AY.99.10.001553
ORF1ab/nsp16236P236LcCacTa11B.1.1.10.000327
ORF1ab/nsp16236P236LcCacTa11B.1.1.100.001115
ORF1ab/nsp16236P236LcCacTa11B.1.1.250.000569
ORF1ab/nsp16236P236LcCacTa11B.1.1.2550.00303
ORF1ab/nsp16236P236LcCacTa11B.1.1.3030.002762
ORF1ab/nsp16236P236LcCacTa11B.1.1.3060.000438
ORF1ab/nsp16236P236LcCacTa11B.1.1.3690.000446
ORF1ab/nsp16236P236LcCacTa11B.1.1.3770.001381
ORF1ab/nsp16236P236LcCacTa11B.1.1.390.00051
ORF1ab/nsp16236P236LcCacTa11B.1.1.3980.003226
ORF1ab/nsp16236P236LcCacTa11B.1.1.4020.011111
ORF1ab/nsp16236P236LcCacTa11B.1.1.4110.014706
ORF1ab/nsp16236P236LcCacTa11B.1.1.4330.001425
ORF1ab/nsp16236P236LcCacTa11B.1.1.4340.000349
ORF1ab/nsp16236P236LcCacTa11B.1.1.5250.005464
ORF1ab/nsp16236P236LcCacTa11B.1.1.740.00431
ORF1ab/nsp16236P236LcCacTa11B.1.1420.002899
ORF1ab/nsp16236P236LcCacTa11B.1.177.150.000631
ORF1ab/nsp16236P236LcCacTa11B.1.177.280.007407
ORF1ab/nsp16236P236LcCacTa11B.1.177.550.002331
ORF1ab/nsp16236P236LcCacTa11B.1.177.60.000977
ORF1ab/nsp16236P236LcCacTa11B.1.177.620.001192
ORF1ab/nsp16236P236LcCacTa11B.1.177.650.000665
ORF1ab/nsp16236P236LcCacTa11B.1.177.70.000165
ORF1ab/nsp16236P236LcCacTa11B.1.177.750.001041
ORF1ab/nsp16236P236LcCacTa11B.1.177.90.001332
ORF1ab/nsp16236P236LcCacTa11B.1.2210.000071
ORF1ab/nsp16236P236LcCacTa11B.1.2400.000216
ORF1ab/nsp16236P236LcCacTa11B.1.3200.001245
ORF1ab/nsp16236P236LcCacTa11B.1.3400.004292
ORF1ab/nsp16236P236LcCacTa11B.1.360.000146
ORF1ab/nsp16236P236LcCacTa11B.1.36.290.000517
ORF1ab/nsp16236P236LcCacTa11B.1.3610.001289
ORF1ab/nsp16236P236LcCacTa11B.1.4090.000781
ORF1ab/nsp16236P236LcCacTa11B.1.4110.003704
ORF1ab/nsp16236P236LcCacTa11B.1.4320.011236
ORF1ab/nsp16236P236LcCacTa11B.1.4510.008197
ORF1ab/nsp16236P236LcCacTa11B.1.5050.004386
ORF1ab/nsp16236P236LcCacTa11B.1.5230.002451
ORF1ab/nsp16236P236LcCacTa11B.1.5460.003704
ORF1ab/nsp16236P236LcCacTa11B.1.5580.004566
ORF1ab/nsp16236P236LcCacTa11B.1.575.10.002439
ORF1ab/nsp16236P236LcCacTa11B.1.5770.000687
ORF1ab/nsp16236P236LcCacTa11B.1.6030.010638
ORF1ab/nsp16236P236LcCacTa11B.1.617.10.000129
ORF1ab/nsp16236P236LcCacTa11B.1.6190.000871
ORF1ab/nsp16236P236LcCacTa11B.1.621.10.000506
ORF1ab/nsp16236P236LcCacTa11B.390.002331
ORF1ab/nsp16236P236LcCacTa11C.300.001727
ORF1ab/nsp16236P236LcCacTa11C.370.000116
ORF1ab/nsp16236P236LcCacTa11P.1.110.010204
ORF1ab/nsp16236P236LcCacTa11P.1.170.000162
ORF1ab/nsp16236P236LcCacTa11Q.10.000126
ORF1ab/nsp16236P236LcCacTa11Q.40.000455
ORF1ab/nsp16236P236LcCacTa11Q.50.016949
ORF1ab/nsp16236P236LcCacTa11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.