CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 236 & Codon = Tca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16236P236SP7034SnonsynCcaTca893989360.99966421364-21366

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16236P236SCcaTca89368939All0.001709
ORF1ab/nsp16236P236SCcaTca31093109AY.40.004839
ORF1ab/nsp16236P236SCcaTca21072107B.1.5170.899658
ORF1ab/nsp16236P236SCcaTca982982B.1.1.70.000879
ORF1ab/nsp16236P236SCcaTca299299B.1.4290.007035
ORF1ab/nsp16236P236SCcaTca203203B.1.575.20.975962
ORF1ab/nsp16236P236SCcaTca189189B.1.617.20.000712
ORF1ab/nsp16236P236SCcaTca188188B.1.517.10.989474
ORF1ab/nsp16236P236SCcaTca130131AY.430.000576
ORF1ab/nsp16236P236SCcaTca123123AY.440.000749
ORF1ab/nsp16236P236SCcaTca121121B.10.001108
ORF1ab/nsp16236P236SCcaTca7171P.10.001119
ORF1ab/nsp16236P236SCcaTca7070B.1.5750.021238
ORF1ab/nsp16236P236SCcaTca6868B.1.1770.000895
ORF1ab/nsp16236P236SCcaTca6363AY.4.20.001366
ORF1ab/nsp16236P236SCcaTca5757AY.260.001614
ORF1ab/nsp16236P236SCcaTca4949B.1.20.000431
ORF1ab/nsp16236P236SCcaTca4848AY.420.001931
ORF1ab/nsp16236P236SCcaTca4646AY.250.000277
ORF1ab/nsp16236P236SCcaTca4141AY.4.50.004407
ORF1ab/nsp16236P236SCcaTca3737B.1.10.000671
ORF1ab/nsp16236P236SCcaTca3434AY.290.000536
ORF1ab/nsp16236P236SCcaTca3232B.1.3510.000951
ORF1ab/nsp16236P236SCcaTca3131B.1.1.5190.001231
ORF1ab/nsp16236P236SCcaTca3030B.1.3700.24
ORF1ab/nsp16236P236SCcaTca2929AY.740.003354
ORF1ab/nsp16236P236SCcaTca2626AY.1000.001196
ORF1ab/nsp16236P236SCcaTca2626AY.1030.000161
ORF1ab/nsp16236P236SCcaTca2525AY.460.002602
ORF1ab/nsp16236P236SCcaTca2122AY.30.000209
ORF1ab/nsp16236P236SCcaTca2222B.1.258.170.002287
ORF1ab/nsp16236P236SCcaTca1717AY.980.001343
ORF1ab/nsp16236P236SCcaTca1717B.1.5260.0004
ORF1ab/nsp16236P236SCcaTca1616AY.470.000498
ORF1ab/nsp16236P236SCcaTca1616AY.50.00033
ORF1ab/nsp16236P236SCcaTca1616AY.98.10.000775
ORF1ab/nsp16236P236SCcaTca1414AY.1020.000371
ORF1ab/nsp16236P236SCcaTca1414AY.120.10.004494
ORF1ab/nsp16236P236SCcaTca1414B.1.6370.001023
ORF1ab/nsp16236P236SCcaTca1313AY.3.10.001108
ORF1ab/nsp16236P236SCcaTca1313B.1.1600.000405
ORF1ab/nsp16236P236SCcaTca1313B.1.2580.000865
ORF1ab/nsp16236P236SCcaTca1313B.1.3890.013026
ORF1ab/nsp16236P236SCcaTca1212B.1.177.860.002201
ORF1ab/nsp16236P236SCcaTca1212B.1.5610.004764
ORF1ab/nsp16236P236SCcaTca1212B.1.6210.001062
ORF1ab/nsp16236P236SCcaTca1111AY.1190.000388
ORF1ab/nsp16236P236SCcaTca1111AY.4.2.10.001639
ORF1ab/nsp16236P236SCcaTca1010B.1.1.280.003112
ORF1ab/nsp16236P236SCcaTca1010B.1.2400.002156
ORF1ab/nsp16236P236SCcaTca1010B.1.4270.000505
ORF1ab/nsp16236P236SCcaTca1010P.1.170.001618
ORF1ab/nsp16236P236SCcaTca99B.1.5250.001018
ORF1ab/nsp16236P236SCcaTca88AY.390.000198
ORF1ab/nsp16236P236SCcaTca88B.1.177.200.01214
ORF1ab/nsp16236P236SCcaTca77AY.29.10.001544
ORF1ab/nsp16236P236SCcaTca77AY.330.000467
ORF1ab/nsp16236P236SCcaTca77AY.75.10.001262
ORF1ab/nsp16236P236SCcaTca77B.1.1.3020.014523
ORF1ab/nsp16236P236SCcaTca77B.1.2210.000497
ORF1ab/nsp16236P236SCcaTca77B.1.2430.000487
ORF1ab/nsp16236P236SCcaTca66AY.750.000336
ORF1ab/nsp16236P236SCcaTca66B.1.5960.000523
ORF1ab/nsp16236P236SCcaTca66C.340.222222
ORF1ab/nsp16236P236SCcaTca55AY.1180.000313
ORF1ab/nsp16236P236SCcaTca55AY.200.000194
ORF1ab/nsp16236P236SCcaTca55AY.450.000608
ORF1ab/nsp16236P236SCcaTca55AY.60.000206
ORF1ab/nsp16236P236SCcaTca55B.1.1.4340.001743
ORF1ab/nsp16236P236SCcaTca55B.1.3690.001426
ORF1ab/nsp16236P236SCcaTca44AY.340.000388
ORF1ab/nsp16236P236SCcaTca44AY.9.20.000147
ORF1ab/nsp16236P236SCcaTca44B.1.1.3180.001207
ORF1ab/nsp16236P236SCcaTca44B.1.351.20.00121
ORF1ab/nsp16236P236SCcaTca44B.1.36.220.004831
ORF1ab/nsp16236P236SCcaTca44B.1.575.10.009756
ORF1ab/nsp16236P236SCcaTca44B.6.60.003556
ORF1ab/nsp16236P236SCcaTca44P.1.140.000191
ORF1ab/nsp16236P236SCcaTca33A0.001161
ORF1ab/nsp16236P236SCcaTca33AD.20.000657
ORF1ab/nsp16236P236SCcaTca33AY.1060.001005
ORF1ab/nsp16236P236SCcaTca33AY.1170.000254
ORF1ab/nsp16236P236SCcaTca33AY.1200.000112
ORF1ab/nsp16236P236SCcaTca33AY.270.000194
ORF1ab/nsp16236P236SCcaTca33AY.46.50.000595
ORF1ab/nsp16236P236SCcaTca33AY.90.000203
ORF1ab/nsp16236P236SCcaTca33AY.9.10.000251
ORF1ab/nsp16236P236SCcaTca33B.1.1.10.00098
ORF1ab/nsp16236P236SCcaTca33B.1.1.2140.000166
ORF1ab/nsp16236P236SCcaTca33B.1.1.2200.005576
ORF1ab/nsp16236P236SCcaTca33B.1.1.3480.002389
ORF1ab/nsp16236P236SCcaTca33B.1.1260.003827
ORF1ab/nsp16236P236SCcaTca33B.1.177.100.002634
ORF1ab/nsp16236P236SCcaTca33B.1.177.350.002073
ORF1ab/nsp16236P236SCcaTca33B.1.258.30.005025
ORF1ab/nsp16236P236SCcaTca33B.1.3620.004622
ORF1ab/nsp16236P236SCcaTca33B.1.5090.002597
ORF1ab/nsp16236P236SCcaTca33B.1.617.10.000387
ORF1ab/nsp16236P236SCcaTca33B.1.6280.001057
ORF1ab/nsp16236P236SCcaTca33P.20.00056
ORF1ab/nsp16236P236SCcaTca33Q.30.000435
ORF1ab/nsp16236P236SCcaTca22AY.1100.000225
ORF1ab/nsp16236P236SCcaTca22AY.400.001929
ORF1ab/nsp16236P236SCcaTca22AY.410.000588
ORF1ab/nsp16236P236SCcaTca22AY.46.40.000329
ORF1ab/nsp16236P236SCcaTca22AY.610.00021
ORF1ab/nsp16236P236SCcaTca22AY.620.000871
ORF1ab/nsp16236P236SCcaTca22AY.640.00119
ORF1ab/nsp16236P236SCcaTca22AY.670.000929
ORF1ab/nsp16236P236SCcaTca22AY.900.001369
ORF1ab/nsp16236P236SCcaTca22AY.910.001461
ORF1ab/nsp16236P236SCcaTca22AY.99.20.000184
ORF1ab/nsp16236P236SCcaTca22B0.000256
ORF1ab/nsp16236P236SCcaTca22B.1.1.1760.000879
ORF1ab/nsp16236P236SCcaTca22B.1.1.2690.002706
ORF1ab/nsp16236P236SCcaTca22B.1.1.2910.001485
ORF1ab/nsp16236P236SCcaTca22B.1.1.3160.00185
ORF1ab/nsp16236P236SCcaTca22B.1.1.390.001019
ORF1ab/nsp16236P236SCcaTca22B.1.1.700.000682
ORF1ab/nsp16236P236SCcaTca22B.1.1120.010363
ORF1ab/nsp16236P236SCcaTca22B.1.1150.043478
ORF1ab/nsp16236P236SCcaTca22B.1.177.120.000303
ORF1ab/nsp16236P236SCcaTca22B.1.177.440.001038
ORF1ab/nsp16236P236SCcaTca22B.1.177.560.001335
ORF1ab/nsp16236P236SCcaTca22B.1.177.730.001133
ORF1ab/nsp16236P236SCcaTca22B.1.36.310.003503
ORF1ab/nsp16236P236SCcaTca22B.1.36.80.002
ORF1ab/nsp16236P236SCcaTca22B.1.438.10.000215
ORF1ab/nsp16236P236SCcaTca22B.1.4450.023529
ORF1ab/nsp16236P236SCcaTca22B.1.4730.038462
ORF1ab/nsp16236P236SCcaTca22B.1.5240.002813
ORF1ab/nsp16236P236SCcaTca22C.36.30.001134
ORF1ab/nsp16236P236SCcaTca22C.370.000232
ORF1ab/nsp16236P236SCcaTca22P.1.150.000465
ORF1ab/nsp16236P236SCcaTca22Q.10.000253
ORF1ab/nsp16236P236SCcaTca22Q.40.00091
ORF1ab/nsp16236P236SCcaTca22Q.80.00033
ORF1ab/nsp16236P236SCcaTca11AH.30.003802
ORF1ab/nsp16236P236SCcaTca11AP.10.001502
ORF1ab/nsp16236P236SCcaTca11AT.10.005128
ORF1ab/nsp16236P236SCcaTca11AU.30.00211
ORF1ab/nsp16236P236SCcaTca11AY.10.000396
ORF1ab/nsp16236P236SCcaTca11AY.1130.000142
ORF1ab/nsp16236P236SCcaTca11AY.120.20.001285
ORF1ab/nsp16236P236SCcaTca11AY.1210.000135
ORF1ab/nsp16236P236SCcaTca11AY.160.00038
ORF1ab/nsp16236P236SCcaTca11AY.16.10.00047
ORF1ab/nsp16236P236SCcaTca11AY.190.00114
ORF1ab/nsp16236P236SCcaTca11AY.300.000396
ORF1ab/nsp16236P236SCcaTca11AY.34.10.00051
ORF1ab/nsp16236P236SCcaTca11AY.380.000499
ORF1ab/nsp16236P236SCcaTca11AY.39.10.00004
ORF1ab/nsp16236P236SCcaTca11AY.4.40.000409
ORF1ab/nsp16236P236SCcaTca11AY.46.10.001027
ORF1ab/nsp16236P236SCcaTca11AY.5.30.000337
ORF1ab/nsp16236P236SCcaTca11AY.5.40.000277
ORF1ab/nsp16236P236SCcaTca11AY.500.000799
ORF1ab/nsp16236P236SCcaTca11AY.530.000288
ORF1ab/nsp16236P236SCcaTca11AY.540.000095
ORF1ab/nsp16236P236SCcaTca11AY.590.00053
ORF1ab/nsp16236P236SCcaTca11AY.650.000533
ORF1ab/nsp16236P236SCcaTca11AY.690.000187
ORF1ab/nsp16236P236SCcaTca11AY.70.000196
ORF1ab/nsp16236P236SCcaTca11AY.7.10.000113
ORF1ab/nsp16236P236SCcaTca11AY.780.001541
ORF1ab/nsp16236P236SCcaTca11AY.850.000427
ORF1ab/nsp16236P236SCcaTca11AY.860.00083
ORF1ab/nsp16236P236SCcaTca11B.1.1.1190.034483
ORF1ab/nsp16236P236SCcaTca11B.1.1.1320.014925
ORF1ab/nsp16236P236SCcaTca11B.1.1.2220.000204
ORF1ab/nsp16236P236SCcaTca11B.1.1.2410.00207
ORF1ab/nsp16236P236SCcaTca11B.1.1.2790.001121
ORF1ab/nsp16236P236SCcaTca11B.1.1.2940.001266
ORF1ab/nsp16236P236SCcaTca11B.1.1.2970.002237
ORF1ab/nsp16236P236SCcaTca11B.1.1.3110.000358
ORF1ab/nsp16236P236SCcaTca11B.1.1.330.000421
ORF1ab/nsp16236P236SCcaTca11B.1.1.3340.016393
ORF1ab/nsp16236P236SCcaTca11B.1.1.3750.011905
ORF1ab/nsp16236P236SCcaTca11B.1.1.4320.001266
ORF1ab/nsp16236P236SCcaTca11B.1.1.480.002874
ORF1ab/nsp16236P236SCcaTca11B.1.1.500.000679
ORF1ab/nsp16236P236SCcaTca11B.1.1040.00369
ORF1ab/nsp16236P236SCcaTca11B.1.110.30.000718
ORF1ab/nsp16236P236SCcaTca11B.1.1280.000635
ORF1ab/nsp16236P236SCcaTca11B.1.1420.002899
ORF1ab/nsp16236P236SCcaTca11B.1.177.320.00135
ORF1ab/nsp16236P236SCcaTca11B.1.177.380.010417
ORF1ab/nsp16236P236SCcaTca11B.1.177.430.001477
ORF1ab/nsp16236P236SCcaTca11B.1.177.570.000281
ORF1ab/nsp16236P236SCcaTca11B.1.177.70.000165
ORF1ab/nsp16236P236SCcaTca11B.1.177.820.000477
ORF1ab/nsp16236P236SCcaTca11B.1.2140.003663
ORF1ab/nsp16236P236SCcaTca11B.1.2410.000812
ORF1ab/nsp16236P236SCcaTca11B.1.258.110.000396
ORF1ab/nsp16236P236SCcaTca11B.1.3110.000275
ORF1ab/nsp16236P236SCcaTca11B.1.3200.001245
ORF1ab/nsp16236P236SCcaTca11B.1.3240.001605
ORF1ab/nsp16236P236SCcaTca11B.1.3360.002439
ORF1ab/nsp16236P236SCcaTca11B.1.3460.001311
ORF1ab/nsp16236P236SCcaTca11B.1.3500.002933
ORF1ab/nsp16236P236SCcaTca11B.1.360.000146
ORF1ab/nsp16236P236SCcaTca11B.1.36.180.00042
ORF1ab/nsp16236P236SCcaTca11B.1.36.290.000517
ORF1ab/nsp16236P236SCcaTca11B.1.3610.001289
ORF1ab/nsp16236P236SCcaTca11B.1.3780.006849
ORF1ab/nsp16236P236SCcaTca11B.1.3970.004854
ORF1ab/nsp16236P236SCcaTca11B.1.4040.001302
ORF1ab/nsp16236P236SCcaTca11B.1.4090.000781
ORF1ab/nsp16236P236SCcaTca11B.1.416.10.001563
ORF1ab/nsp16236P236SCcaTca11B.1.4220.000812
ORF1ab/nsp16236P236SCcaTca11B.1.4280.00102
ORF1ab/nsp16236P236SCcaTca11B.1.4590.004082
ORF1ab/nsp16236P236SCcaTca11B.1.5510.00129
ORF1ab/nsp16236P236SCcaTca11B.1.5760.000907
ORF1ab/nsp16236P236SCcaTca11B.1.5880.00091
ORF1ab/nsp16236P236SCcaTca11B.1.5950.000261
ORF1ab/nsp16236P236SCcaTca11B.1.6120.002653
ORF1ab/nsp16236P236SCcaTca11B.1.6190.000871
ORF1ab/nsp16236P236SCcaTca11B.1.6250.002353
ORF1ab/nsp16236P236SCcaTca11B.1.6270.00202
ORF1ab/nsp16236P236SCcaTca11B.1.90.006173
ORF1ab/nsp16236P236SCcaTca11B.1.910.002075
ORF1ab/nsp16236P236SCcaTca11B.1.930.000934
ORF1ab/nsp16236P236SCcaTca11B.510.047619
ORF1ab/nsp16236P236SCcaTca11C.10.002392
ORF1ab/nsp16236P236SCcaTca11C.1.20.004255
ORF1ab/nsp16236P236SCcaTca11C.350.000774
ORF1ab/nsp16236P236SCcaTca11D.20.000075
ORF1ab/nsp16236P236SCcaTca11P.1.10.000318
ORF1ab/nsp16236P236SCcaTca11P.1.120.000484
ORF1ab/nsp16236P236SCcaTca11P.1.130.000898
ORF1ab/nsp16236P236SCcaTca11P.1.160.000374
ORF1ab/nsp16236P236SCcaTca11R.10.00009
ORF1ab/nsp16236P236SCcaTca11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.