CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 216 & Codon = Tgc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16216R216CR7014CnonsynCgcTgc1158201155370.99755721304-21306

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16216R216CCgcTgc115537115820All0.022098
ORF1ab/nsp16216R216CCgcTgc9928699528B.1.20.87425
ORF1ab/nsp16216R216CCgcTgc80238030B.1.5960.699111
ORF1ab/nsp16216R216CCgcTgc20152038B.10.018456
ORF1ab/nsp16216R216CCgcTgc16801680AY.320.894569
ORF1ab/nsp16216R216CCgcTgc11331133AY.40.001763
ORF1ab/nsp16216R216CCgcTgc424424B.1.617.20.001597
ORF1ab/nsp16216R216CCgcTgc324324AY.1030.002012
ORF1ab/nsp16216R216CCgcTgc301301AY.250.00181
ORF1ab/nsp16216R216CCgcTgc267267B.1.1.70.000239
ORF1ab/nsp16216R216CCgcTgc206206AY.390.005091
ORF1ab/nsp16216R216CCgcTgc196197B.1.10.003556
ORF1ab/nsp16216R216CCgcTgc118118AY.470.00367
ORF1ab/nsp16216R216CCgcTgc102102B.1.5950.026618
ORF1ab/nsp16216R216CCgcTgc6565AY.39.10.002575
ORF1ab/nsp16216R216CCgcTgc6161AY.430.00027
ORF1ab/nsp16216R216CCgcTgc5656B.1.36.260.16
ORF1ab/nsp16216R216CCgcTgc5252AY.30.000517
ORF1ab/nsp16216R216CCgcTgc4646AY.1100.005184
ORF1ab/nsp16216R216CCgcTgc4545AY.440.000274
ORF1ab/nsp16216R216CCgcTgc4545B.1.4290.001059
ORF1ab/nsp16216R216CCgcTgc4545P.1.160.016835
ORF1ab/nsp16216R216CCgcTgc4040B.1.2340.005278
ORF1ab/nsp16216R216CCgcTgc3939B.1.177.730.022084
ORF1ab/nsp16216R216CCgcTgc3131AY.200.001205
ORF1ab/nsp16216R216CCgcTgc1524B.1.1.5190.000596
ORF1ab/nsp16216R216CCgcTgc2323AY.50.000475
ORF1ab/nsp16216R216CCgcTgc2222B.1.2430.001531
ORF1ab/nsp16216R216CCgcTgc2222B.1.5800.089431
ORF1ab/nsp16216R216CCgcTgc2121AY.98.10.001017
ORF1ab/nsp16216R216CCgcTgc2020AY.9.20.000735
ORF1ab/nsp16216R216CCgcTgc2020B.1.2320.010747
ORF1ab/nsp16216R216CCgcTgc1919B.1.1.3350.246753
ORF1ab/nsp16216R216CCgcTgc1717AY.4.20.000369
ORF1ab/nsp16216R216CCgcTgc1717P.10.000268
ORF1ab/nsp16216R216CCgcTgc1616AY.99.20.001475
ORF1ab/nsp16216R216CCgcTgc1616B.1.4270.000808
ORF1ab/nsp16216R216CCgcTgc1515B0.001917
ORF1ab/nsp16216R216CCgcTgc1515B.1.1600.000468
ORF1ab/nsp16216R216CCgcTgc1414AY.330.000935
ORF1ab/nsp16216R216CCgcTgc1414B.1.3690.003993
ORF1ab/nsp16216R216CCgcTgc1313AY.290.000205
ORF1ab/nsp16216R216CCgcTgc1313B.1.1.3260.022887
ORF1ab/nsp16216R216CCgcTgc1313B.1.1770.000171
ORF1ab/nsp16216R216CCgcTgc1313B.1.3960.009174
ORF1ab/nsp16216R216CCgcTgc1212B.1.5820.005888
ORF1ab/nsp16216R216CCgcTgc1111B.1.5640.004685
ORF1ab/nsp16216R216CCgcTgc1111B.1.5760.009973
ORF1ab/nsp16216R216CCgcTgc1010AY.116.10.003114
ORF1ab/nsp16216R216CCgcTgc1010AY.4.50.001075
ORF1ab/nsp16216R216CCgcTgc1010B.1.2060.008157
ORF1ab/nsp16216R216CCgcTgc99AY.260.000255
ORF1ab/nsp16216R216CCgcTgc99AY.46.60.00065
ORF1ab/nsp16216R216CCgcTgc99B.1.1.2750.101124
ORF1ab/nsp16216R216CCgcTgc99B.1.3110.002471
ORF1ab/nsp16216R216CCgcTgc99B.1.360.001313
ORF1ab/nsp16216R216CCgcTgc99B.1.5610.003573
ORF1ab/nsp16216R216CCgcTgc99B.1.5670.03
ORF1ab/nsp16216R216CCgcTgc99B.1.6120.023873
ORF1ab/nsp16216R216CCgcTgc99B.1.6210.000797
ORF1ab/nsp16216R216CCgcTgc88AY.1180.000501
ORF1ab/nsp16216R216CCgcTgc88AY.230.000558
ORF1ab/nsp16216R216CCgcTgc88AY.3.10.000682
ORF1ab/nsp16216R216CCgcTgc88AY.340.000776
ORF1ab/nsp16216R216CCgcTgc88B.1.6370.000585
ORF1ab/nsp16216R216CCgcTgc77AY.1140.001618
ORF1ab/nsp16216R216CCgcTgc77B.1.1.280.002179
ORF1ab/nsp16216R216CCgcTgc77B.1.5250.000792
ORF1ab/nsp16216R216CCgcTgc77B.1.5770.004811
ORF1ab/nsp16216R216CCgcTgc66AY.1170.000507
ORF1ab/nsp16216R216CCgcTgc66AY.450.00073
ORF1ab/nsp16216R216CCgcTgc66AY.460.000624
ORF1ab/nsp16216R216CCgcTgc66B.1.1.5070.052174
ORF1ab/nsp16216R216CCgcTgc66B.1.2390.007326
ORF1ab/nsp16216R216CCgcTgc66B.1.2400.001293
ORF1ab/nsp16216R216CCgcTgc66B.1.2840.078947
ORF1ab/nsp16216R216CCgcTgc66B.1.3490.004289
ORF1ab/nsp16216R216CCgcTgc66B.1.36.180.002521
ORF1ab/nsp16216R216CCgcTgc66R.10.00054
ORF1ab/nsp16216R216CCgcTgc55AY.1020.000133
ORF1ab/nsp16216R216CCgcTgc55AY.420.000201
ORF1ab/nsp16216R216CCgcTgc55AY.46.50.000992
ORF1ab/nsp16216R216CCgcTgc55B.1.3610.006443
ORF1ab/nsp16216R216CCgcTgc44AY.1110.000733
ORF1ab/nsp16216R216CCgcTgc44AY.1190.000141
ORF1ab/nsp16216R216CCgcTgc44AY.300.001583
ORF1ab/nsp16216R216CCgcTgc44AY.360.000593
ORF1ab/nsp16216R216CCgcTgc44AY.720.005442
ORF1ab/nsp16216R216CCgcTgc44AY.750.000224
ORF1ab/nsp16216R216CCgcTgc44AY.950.003044
ORF1ab/nsp16216R216CCgcTgc44B.1.1110.0047
ORF1ab/nsp16216R216CCgcTgc44B.1.3240.006421
ORF1ab/nsp16216R216CCgcTgc44B.1.3510.000119
ORF1ab/nsp16216R216CCgcTgc44B.1.438.10.000429
ORF1ab/nsp16216R216CCgcTgc44B.1.5900.018182
ORF1ab/nsp16216R216CCgcTgc330.166667
ORF1ab/nsp16216R216CCgcTgc33AY.1130.000427
ORF1ab/nsp16216R216CCgcTgc33AY.1200.000112
ORF1ab/nsp16216R216CCgcTgc33AY.46.10.00308
ORF1ab/nsp16216R216CCgcTgc33AY.860.00249
ORF1ab/nsp16216R216CCgcTgc23B.1.1.1610.007067
ORF1ab/nsp16216R216CCgcTgc33B.1.1.3010.003538
ORF1ab/nsp16216R216CCgcTgc33B.1.1.4340.001046
ORF1ab/nsp16216R216CCgcTgc33B.1.1390.002199
ORF1ab/nsp16216R216CCgcTgc33B.1.2100.006397
ORF1ab/nsp16216R216CCgcTgc33B.1.3060.017143
ORF1ab/nsp16216R216CCgcTgc33B.1.36.380.004926
ORF1ab/nsp16216R216CCgcTgc33B.1.3750.002459
ORF1ab/nsp16216R216CCgcTgc33B.1.4000.001287
ORF1ab/nsp16216R216CCgcTgc33B.1.4040.003906
ORF1ab/nsp16216R216CCgcTgc33B.1.5170.001281
ORF1ab/nsp16216R216CCgcTgc33B.1.5260.000071
ORF1ab/nsp16216R216CCgcTgc33B.1.5690.043478
ORF1ab/nsp16216R216CCgcTgc33B.1.5810.028302
ORF1ab/nsp16216R216CCgcTgc33P.20.00056
ORF1ab/nsp16216R216CCgcTgc22A.2.50.000998
ORF1ab/nsp16216R216CCgcTgc22AY.1040.003968
ORF1ab/nsp16216R216CCgcTgc22AY.1080.002205
ORF1ab/nsp16216R216CCgcTgc22AY.120.10.000642
ORF1ab/nsp16216R216CCgcTgc22AY.4.2.10.000298
ORF1ab/nsp16216R216CCgcTgc22AY.46.20.001271
ORF1ab/nsp16216R216CCgcTgc22AY.60.000082
ORF1ab/nsp16216R216CCgcTgc22AY.620.000871
ORF1ab/nsp16216R216CCgcTgc22AY.650.001066
ORF1ab/nsp16216R216CCgcTgc22AY.75.10.000361
ORF1ab/nsp16216R216CCgcTgc22AY.90.000135
ORF1ab/nsp16216R216CCgcTgc22AY.960.004149
ORF1ab/nsp16216R216CCgcTgc22AY.980.000158
ORF1ab/nsp16216R216CCgcTgc22AY.990.002099
ORF1ab/nsp16216R216CCgcTgc22B.1.1.2100.011429
ORF1ab/nsp16216R216CCgcTgc22B.1.1.2220.000408
ORF1ab/nsp16216R216CCgcTgc22B.1.1.2580.006515
ORF1ab/nsp16216R216CCgcTgc22B.1.1.3540.008772
ORF1ab/nsp16216R216CCgcTgc22B.1.1.4200.002012
ORF1ab/nsp16216R216CCgcTgc22B.1.1260.002551
ORF1ab/nsp16216R216CCgcTgc22B.1.1570.00597
ORF1ab/nsp16216R216CCgcTgc22B.1.177.110.003396
ORF1ab/nsp16216R216CCgcTgc22B.1.2580.000133
ORF1ab/nsp16216R216CCgcTgc22B.1.3050.004301
ORF1ab/nsp16216R216CCgcTgc22B.1.3360.004878
ORF1ab/nsp16216R216CCgcTgc22B.1.3370.011173
ORF1ab/nsp16216R216CCgcTgc22B.1.3670.001585
ORF1ab/nsp16216R216CCgcTgc22B.1.3700.016
ORF1ab/nsp16216R216CCgcTgc22B.1.3950.014085
ORF1ab/nsp16216R216CCgcTgc22B.1.3990.003868
ORF1ab/nsp16216R216CCgcTgc22B.1.5210.00995
ORF1ab/nsp16216R216CCgcTgc22B.1.5460.007407
ORF1ab/nsp16216R216CCgcTgc22B.1.5500.027397
ORF1ab/nsp16216R216CCgcTgc22B.1.5650.001621
ORF1ab/nsp16216R216CCgcTgc22B.1.5680.002222
ORF1ab/nsp16216R216CCgcTgc22B.1.5750.000607
ORF1ab/nsp16216R216CCgcTgc22B.1.5890.015152
ORF1ab/nsp16216R216CCgcTgc22B.1.6230.001073
ORF1ab/nsp16216R216CCgcTgc22B.1.780.017094
ORF1ab/nsp16216R216CCgcTgc22C.36.30.001134
ORF1ab/nsp16216R216CCgcTgc22P.1.120.000968
ORF1ab/nsp16216R216CCgcTgc22P.1.140.000096
ORF1ab/nsp16216R216CCgcTgc22P.1.150.000465
ORF1ab/nsp16216R216CCgcTgc11A0.000387
ORF1ab/nsp16216R216CCgcTgc11A.10.000282
ORF1ab/nsp16216R216CCgcTgc11A.2.5.20.001572
ORF1ab/nsp16216R216CCgcTgc11AD.20.000219
ORF1ab/nsp16216R216CCgcTgc11AY.1000.000046
ORF1ab/nsp16216R216CCgcTgc11AY.1050.000643
ORF1ab/nsp16216R216CCgcTgc11AY.1060.000335
ORF1ab/nsp16216R216CCgcTgc11AY.1070.000466
ORF1ab/nsp16216R216CCgcTgc11AY.1160.000287
ORF1ab/nsp16216R216CCgcTgc11AY.130.000161
ORF1ab/nsp16216R216CCgcTgc11AY.140.000088
ORF1ab/nsp16216R216CCgcTgc11AY.160.00038
ORF1ab/nsp16216R216CCgcTgc11AY.410.000294
ORF1ab/nsp16216R216CCgcTgc11AY.5.30.000337
ORF1ab/nsp16216R216CCgcTgc11AY.550.000917
ORF1ab/nsp16216R216CCgcTgc11AY.590.00053
ORF1ab/nsp16216R216CCgcTgc11AY.680.000274
ORF1ab/nsp16216R216CCgcTgc11AY.70.000196
ORF1ab/nsp16216R216CCgcTgc11AY.710.000475
ORF1ab/nsp16216R216CCgcTgc11AY.820.001357
ORF1ab/nsp16216R216CCgcTgc11AY.840.000437
ORF1ab/nsp16216R216CCgcTgc11AY.850.000427
ORF1ab/nsp16216R216CCgcTgc11AY.9.10.000084
ORF1ab/nsp16216R216CCgcTgc11AY.9.2.10.001976
ORF1ab/nsp16216R216CCgcTgc11AY.910.00073
ORF1ab/nsp16216R216CCgcTgc11AZ.20.000821
ORF1ab/nsp16216R216CCgcTgc11B.1.1.10.000327
ORF1ab/nsp16216R216CCgcTgc11B.1.1.1860.003436
ORF1ab/nsp16216R216CCgcTgc11B.1.1.1890.001513
ORF1ab/nsp16216R216CCgcTgc11B.1.1.1920.002309
ORF1ab/nsp16216R216CCgcTgc11B.1.1.2300.009174
ORF1ab/nsp16216R216CCgcTgc11B.1.1.2310.003096
ORF1ab/nsp16216R216CCgcTgc11B.1.1.250.000569
ORF1ab/nsp16216R216CCgcTgc11B.1.1.2790.001121
ORF1ab/nsp16216R216CCgcTgc11B.1.1.3160.000925
ORF1ab/nsp16216R216CCgcTgc11B.1.1.3170.000412
ORF1ab/nsp16216R216CCgcTgc11B.1.1.3220.008772
ORF1ab/nsp16216R216CCgcTgc11B.1.1.3290.003846
ORF1ab/nsp16216R216CCgcTgc11B.1.1.3340.016393
ORF1ab/nsp16216R216CCgcTgc11B.1.1.3690.000446
ORF1ab/nsp16216R216CCgcTgc11B.1.1.390.00051
ORF1ab/nsp16216R216CCgcTgc11B.1.1.4210.030303
ORF1ab/nsp16216R216CCgcTgc11B.1.1.50.008333
ORF1ab/nsp16216R216CCgcTgc11B.1.1.5180.006329
ORF1ab/nsp16216R216CCgcTgc11B.1.1.630.000386
ORF1ab/nsp16216R216CCgcTgc11B.1.1.700.000341
ORF1ab/nsp16216R216CCgcTgc11B.1.1.830.00271
ORF1ab/nsp16216R216CCgcTgc11B.1.110.30.000718
ORF1ab/nsp16216R216CCgcTgc11B.1.1190.010526
ORF1ab/nsp16216R216CCgcTgc11B.1.1470.000756
ORF1ab/nsp16216R216CCgcTgc11B.1.160.140.002119
ORF1ab/nsp16216R216CCgcTgc11B.1.160.260.002421
ORF1ab/nsp16216R216CCgcTgc11B.1.177.120.000152
ORF1ab/nsp16216R216CCgcTgc11B.1.177.210.000076
ORF1ab/nsp16216R216CCgcTgc11B.1.177.320.00135
ORF1ab/nsp16216R216CCgcTgc11B.1.177.510.004566
ORF1ab/nsp16216R216CCgcTgc11B.1.177.70.000165
ORF1ab/nsp16216R216CCgcTgc11B.1.177.810.000189
ORF1ab/nsp16216R216CCgcTgc11B.1.177.870.000728
ORF1ab/nsp16216R216CCgcTgc11B.1.1890.004292
ORF1ab/nsp16216R216CCgcTgc11B.1.2210.000071
ORF1ab/nsp16216R216CCgcTgc11B.1.2360.002053
ORF1ab/nsp16216R216CCgcTgc11B.1.2370.004975
ORF1ab/nsp16216R216CCgcTgc11B.1.258.170.000104
ORF1ab/nsp16216R216CCgcTgc11B.1.2800.007143
ORF1ab/nsp16216R216CCgcTgc11B.1.2980.002114
ORF1ab/nsp16216R216CCgcTgc11B.1.3100.047619
ORF1ab/nsp16216R216CCgcTgc11B.1.3300.028571
ORF1ab/nsp16216R216CCgcTgc11B.1.3400.004292
ORF1ab/nsp16216R216CCgcTgc11B.1.351.20.000303
ORF1ab/nsp16216R216CCgcTgc11B.1.36.100.004785
ORF1ab/nsp16216R216CCgcTgc11B.1.36.70.004
ORF1ab/nsp16216R216CCgcTgc11B.1.3620.001541
ORF1ab/nsp16216R216CCgcTgc11B.1.3800.006623
ORF1ab/nsp16216R216CCgcTgc11B.1.3910.001127
ORF1ab/nsp16216R216CCgcTgc11B.1.4030.003268
ORF1ab/nsp16216R216CCgcTgc11B.1.4090.000781
ORF1ab/nsp16216R216CCgcTgc11B.1.4130.004255
ORF1ab/nsp16216R216CCgcTgc11B.1.4230.010204
ORF1ab/nsp16216R216CCgcTgc11B.1.4240.008065
ORF1ab/nsp16216R216CCgcTgc11B.1.4250.002994
ORF1ab/nsp16216R216CCgcTgc11B.1.4280.00102
ORF1ab/nsp16216R216CCgcTgc11B.1.4330.003195
ORF1ab/nsp16216R216CCgcTgc11B.1.4370.020833
ORF1ab/nsp16216R216CCgcTgc11B.1.4430.004673
ORF1ab/nsp16216R216CCgcTgc11B.1.4730.019231
ORF1ab/nsp16216R216CCgcTgc11B.1.4760.1
ORF1ab/nsp16216R216CCgcTgc11B.1.5370.02
ORF1ab/nsp16216R216CCgcTgc11B.1.5510.00129
ORF1ab/nsp16216R216CCgcTgc11B.1.5560.007519
ORF1ab/nsp16216R216CCgcTgc11B.1.5660.019231
ORF1ab/nsp16216R216CCgcTgc11B.1.5740.002151
ORF1ab/nsp16216R216CCgcTgc11B.1.575.10.002439
ORF1ab/nsp16216R216CCgcTgc11B.1.5880.00091
ORF1ab/nsp16216R216CCgcTgc11B.1.5930.01087
ORF1ab/nsp16216R216CCgcTgc11B.1.595.20.04
ORF1ab/nsp16216R216CCgcTgc11B.1.6020.006536
ORF1ab/nsp16216R216CCgcTgc11B.1.6050.005952
ORF1ab/nsp16216R216CCgcTgc11B.1.6090.000479
ORF1ab/nsp16216R216CCgcTgc11B.1.6110.04
ORF1ab/nsp16216R216CCgcTgc11B.1.6280.000352
ORF1ab/nsp16216R216CCgcTgc11B.1.810.021277
ORF1ab/nsp16216R216CCgcTgc11B.1.88.10.004808
ORF1ab/nsp16216R216CCgcTgc11B.1.9.50.005682
ORF1ab/nsp16216R216CCgcTgc11B.1.910.002075
ORF1ab/nsp16216R216CCgcTgc11B.400.000364
ORF1ab/nsp16216R216CCgcTgc11B.610.005747
ORF1ab/nsp16216R216CCgcTgc11C.360.000911
ORF1ab/nsp16216R216CCgcTgc11P.1.100.000269
ORF1ab/nsp16216R216CCgcTgc11P.1.10.10.00813
ORF1ab/nsp16216R216CCgcTgc11P.1.40.000977
ORF1ab/nsp16216R216CCgcTgc11Q.70.001111
ORF1ab/nsp16216R216CCgcTgc11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.