CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 216 | R216N | R7014N | nonsyn | CGc | AAc | 22096 | 22091 | 0.999774 | 21304-21306 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 22091 | 22096 | All | 0.004225 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5458 | 5459 | B.1.1.7 | 0.004886 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3182 | 3182 | AY.4.2 | 0.069013 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2223 | 2224 | AY.4 | 0.00346 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1546 | 1548 | B.1.2 | 0.013613 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1517 | 1517 | AY.3.1 | 0.129338 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 736 | 736 | B.1.617.2 | 0.002771 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 653 | 653 | AY.103 | 0.004055 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 523 | 523 | B.1.177.80 | 1 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 502 | 502 | AY.23 | 0.035014 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 387 | 387 | AY.3 | 0.003849 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 348 | 348 | B.1.526 | 0.00818 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 334 | 334 | AY.44 | 0.002033 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 270 | 270 | AY.25 | 0.001624 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 266 | 266 | B.1.1.44 | 0.640964 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 257 | 257 | B.1.243 | 0.017883 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 209 | 209 | AY.105 | 0.134405 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 174 | 174 | AY.89 | 0.852941 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 163 | 163 | B.1.637 | 0.011911 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 146 | 146 | AY.43 | 0.000647 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 113 | 113 | B.1.177 | 0.001488 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 111 | 111 | B.1.221 | 0.007885 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 108 | 108 | AY.5 | 0.00223 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 90 | 90 | B.1.1 | 0.001633 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 89 | 89 | AY.26 | 0.00252 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 89 | 89 | B.1 | 0.000815 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 85 | 85 | B.1.596 | 0.007407 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 82 | 82 | AY.97 | 0.139456 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 76 | 76 | Q.8 | 0.012533 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 70 | 70 | R.1 | 0.006301 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 69 | 69 | AY.29 | 0.001088 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 66 | 66 | AY.20 | 0.002565 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 64 | 64 | AY.42 | 0.002575 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 60 | 60 | AY.29.1 | 0.01323 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 59 | 59 | B.1.429 | 0.001388 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 56 | 56 | AY.39 | 0.001384 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 49 | 49 | B.1.177.86 | 0.008989 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 47 | 47 | AY.5.3 | 0.015857 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 47 | 47 | P.1 | 0.00074 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 46 | 46 | AY.33 | 0.003072 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 45 | 45 | B.1.578 | 0.803571 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 44 | 44 | B.1.427 | 0.002222 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 44 | 44 | B.1.621 | 0.003895 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 42 | 42 | AY.117 | 0.00355 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 41 | 41 | AY.100 | 0.001886 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 40 | 40 | B.1.1.432 | 0.050633 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 39 | 39 | B.1.258.17 | 0.004055 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 38 | 38 | AY.47 | 0.001182 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 36 | 36 | B.1.351 | 0.00107 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 35 | 35 | AY.110 | 0.003944 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 35 | 35 | AY.91 | 0.025566 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 34 | 34 | AY.118 | 0.00213 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 33 | 33 | AY.6 | 0.001357 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 32 | 32 | AY.101 | 0.015694 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 29 | 29 | AY.99.2 | 0.002673 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 26 | 27 | A.2.5 | 0.012974 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 27 | 27 | AY.86 | 0.022407 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 27 | 27 | B.1.258 | 0.001797 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 25 | 25 | P.1.14 | 0.001195 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 23 | 23 | AY.39.1 | 0.000911 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 22 | 22 | B.1.575 | 0.006675 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 20 | 20 | AY.46.6 | 0.001444 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 20 | 20 | AY.98 | 0.00158 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 18 | 18 | B.1.36.18 | 0.007563 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 17 | 17 | Q.1 | 0.002148 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 16 | 16 | AY.116 | 0.004588 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 15 | 15 | AY.4.5 | 0.001612 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 15 | 15 | B.1.149 | 0.05137 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 15 | 15 | B.1.422 | 0.012185 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 15 | 15 | B.1.609 | 0.007191 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 14 | 14 | AY.121 | 0.001894 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 14 | 14 | AY.45 | 0.001704 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 13 | 13 | AY.116.1 | 0.004049 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 13 | 13 | AY.119 | 0.000459 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 13 | 13 | B.1.1.318 | 0.003923 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 13 | 13 | B.1.1.486 | 0.020505 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 13 | 13 | B.1.160 | 0.000405 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 13 | 13 | B.1.438.1 | 0.001394 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 12 | 12 | AY.113 | 0.001709 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 12 | 12 | AY.61 | 0.001257 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 12 | 12 | B.1.1.434 | 0.004183 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 12 | 12 | Q.7 | 0.013333 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 11 | 11 | B.1.36.26 | 0.031429 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 11 | 11 | P.1.12 | 0.005324 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 10 | 10 | AY.55 | 0.009174 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 10 | 10 | B.1.258.3 | 0.01675 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 10 | 10 | B.1.351.5 | 0.005995 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 10 | 10 | B.1.409 | 0.007812 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 10 | 10 | C.36.3 | 0.005672 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 9 | 9 | AE.8 | 0.004401 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 9 | 9 | AY.27 | 0.000582 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 9 | 9 | B.1.408 | 0.03321 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 9 | 9 | B.1.595 | 0.002349 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 9 | 9 | C.8 | 0.040179 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 8 | 8 | AY.36 | 0.001186 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 8 | 8 | B.1.1.317 | 0.003294 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 8 | 8 | B.1.416.1 | 0.0125 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 7 | 7 | AY.85 | 0.00299 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 7 | 7 | B.1.177.57 | 0.001967 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 7 | 7 | B.1.177.7 | 0.001154 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 7 | 7 | B.1.466.2 | 0.002739 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 7 | 7 | B.1.577 | 0.004811 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 7 | 7 | Q.2 | 0.004294 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | AY.4.2.1 | 0.000894 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | AY.46.5 | 0.00119 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | AY.92 | 0.001724 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | AY.95 | 0.004566 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | B.1.177.81 | 0.001136 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | B.1.621.1 | 0.003035 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 6 | 6 | Q.3 | 0.00087 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | AY.30 | 0.001979 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | AY.79 | 0.006053 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | AY.8 | 0.00303 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | B.1.1.329 | 0.019231 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | B.1.177.28 | 0.037037 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | B.1.530 | 0.035714 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | B.1.568 | 0.005556 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | AY.4.4 | 0.001637 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | AY.46.2 | 0.002541 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | AY.93 | 0.001092 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | AZ.2 | 0.003284 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | B.1.381 | 0.03125 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | B.1.391 | 0.00451 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | B.1.575.1 | 0.009756 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | B.1.623 | 0.002146 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | C.35 | 0.003096 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | C.38 | 0.032258 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 4 | 4 | P.6 | 0.012579 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | A.2.5.1 | 0.014423 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | AY.76 | 0.014493 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.1.397 | 0.006757 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.177.35 | 0.002073 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.177.79 | 0.007026 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.221.1 | 0.008721 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.336 | 0.007317 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.541 | 0.013274 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B | 0.000256 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.228 | 0.006098 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.297 | 0.004474 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.335 | 0.025974 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.410 | 0.074074 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.442 | 0.037037 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.12 | 0.016 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.258.24 | 0.021505 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.279 | 0.001027 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.289 | 0.005319 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.516 | 0.003914 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.602 | 0.013072 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.616 | 0.04878 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.625 | 0.004706 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | B.1.70 | 0.04878 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | C.2 | 0.032258 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | D.5 | 0.00995 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 2 | 2 | P.1.8 | 0.009569 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.282 | 0.011628 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.424 | 0.045455 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.1.95 | 0.019608 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.177.59 | 0.016129 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.248 | 0.029412 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.592 | 0.04 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 216 | R216N | CGc | AAc | 1 | 1 | P.1.7 | 0.000319 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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