CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 216

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp16	216	R216C	R7014C	nonsyn	Cgc	Tgc	115820	115537	0.997557	21304-21306
ORF1ab/nsp16	216	R216C	R7014C	nonsyn	CgC	TgT	115820	283	0.00244345	21304-21306
ORF1ab/nsp16	216	R216R	R7014R	syn	cgC	cgT	29807	29758	0.998356	21304-21306
ORF1ab/nsp16	216	R216R	R7014R	syn	cgC	cgA	29807	42	0.00140906	21304-21306
ORF1ab/nsp16	216	R216R	R7014R	syn	cgC	cgG	29807	7	0.000234844	21304-21306
ORF1ab/nsp16	216	R216N	R7014N	nonsyn	CGc	AAc	22096	22091	0.999774	21304-21306
ORF1ab/nsp16	216	R216N	R7014N	nonsyn	CGC	AAT	22096	5	0.000226285	21304-21306
ORF1ab/nsp16	216	R216S	R7014S	nonsyn	Cgc	Agc	5514	5500	0.997461	21304-21306
ORF1ab/nsp16	216	R216S	R7014S	nonsyn	CgC	AgT	5514	14	0.00253899	21304-21306
ORF1ab/nsp16	216	R216H	R7014H	nonsyn	cGc	cAc	3165	3127	0.987994	21304-21306
ORF1ab/nsp16	216	R216H	R7014H	nonsyn	cGC	cAT	3165	38	0.0120063	21304-21306
ORF1ab/nsp16	216	R216L	R7014L	nonsyn	cGc	cTc	150	150	1	21304-21306
ORF1ab/nsp16	216	R216del	R7014del	del	CGC	---	127	127	1	21304-21306
ORF1ab/nsp16	216	R216G	R7014G	nonsyn	Cgc	Ggc	38	38	1	21304-21306
ORF1ab/nsp16	216	R216F	R7014F	nonsyn	CGc	TTc	36	36	1	21304-21306
ORF1ab/nsp16	216	R216Y	R7014Y	nonsyn	CGc	TAc	31	31	1	21304-21306
ORF1ab/nsp16	216	R216P	R7014P	nonsyn	cGc	cCc	11	10	0.909091	21304-21306
ORF1ab/nsp16	216	R216P	R7014P	nonsyn	cGC	cCG	11	1	0.0909091	21304-21306
ORF1ab/nsp16	216	R216X	R7014X	nonsyn	CgC	TgA	4	2	0.5	21304-21306
ORF1ab/nsp16	216	R216X	R7014X	nonsyn	CGC	TAA	4	2	0.5	21304-21306
ORF1ab/nsp16	216	R216del1	R7014del1	del	cGc	c-c	3	2	0.666667	21304-21306
ORF1ab/nsp16	216	R216del1	R7014del1	del	CgC	Tg-	3	1	0.333333	21304-21306
ORF1ab/nsp16	216	R216Q	R7014Q	nonsyn	cGC	cAA	2	2	1	21304-21306
ORF1ab/nsp16	216	R216T	R7014T	nonsyn	CGc	ACc	2	2	1	21304-21306
ORF1ab/nsp16	216	R216del2	R7014del2	del	cGC	c--	1	1	1	21304-21306

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp16	216	R216C	Cgc	Tgc	115537	115820	All	0.022098
ORF1ab/nsp16	216	R216C	CgC	TgT	283	115820	All	0.000054
ORF1ab/nsp16	216	R216C	Cgc	Tgc	99286	99528	B.1.2	0.87425
ORF1ab/nsp16	216	R216C	CgC	TgT	242	99528	B.1.2	0.002131
ORF1ab/nsp16	216	R216R	cgC	cgT	29758	29807	All	0.005692
ORF1ab/nsp16	216	R216R	cgC	cgA	42	29807	All	0.000008
ORF1ab/nsp16	216	R216R	cgC	cgG	7	29807	All	0.000001
ORF1ab/nsp16	216	R216R	cgC	cgT	23053	23053	B.1.1.519	0.915455
ORF1ab/nsp16	216	R216N	CGc	AAc	22091	22096	All	0.004225
ORF1ab/nsp16	216	R216N	CGC	AAT	5	22096	All	0.000001
ORF1ab/nsp16	216	R216C	Cgc	Tgc	8023	8030	B.1.596	0.699111
ORF1ab/nsp16	216	R216C	CgC	TgT	7	8030	B.1.596	0.00061
ORF1ab/nsp16	216	R216S	Cgc	Agc	5500	5514	All	0.001052
ORF1ab/nsp16	216	R216S	CgC	AgT	14	5514	All	0.000003
ORF1ab/nsp16	216	R216N	CGc	AAc	5458	5459	B.1.1.7	0.004886
ORF1ab/nsp16	216	R216N	CGC	AAT	1	5459	B.1.1.7	0.000001
ORF1ab/nsp16	216	R216N	CGc	AAc	3182	3182	AY.4.2	0.069013
ORF1ab/nsp16	216	R216H	cGc	cAc	3127	3165	All	0.000598
ORF1ab/nsp16	216	R216H	cGC	cAT	38	3165	All	0.000007
ORF1ab/nsp16	216	R216N	CGc	AAc	2223	2224	AY.4	0.00346
ORF1ab/nsp16	216	R216N	CGC	AAT	1	2224	AY.4	0.000002
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2015	2038	B.1	0.018456
ORF1ab/nsp16	216	R216C	CgC	TgT	23	2038	B.1	0.000211
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1680	1680	AY.32	0.894569
ORF1ab/nsp16	216	R216N	CGc	AAc	1546	1548	B.1.2	0.013613
ORF1ab/nsp16	216	R216N	CGC	AAT	2	1548	B.1.2	0.000018
ORF1ab/nsp16	216	R216N	CGc	AAc	1517	1517	AY.3.1	0.129338
ORF1ab/nsp16	216	R216S	Cgc	Agc	1379	1379	B.1.1.7	0.001235
ORF1ab/nsp16	216	R216R	cgC	cgT	1296	1296	R.1	0.116652
ORF1ab/nsp16	216	R216R	cgC	cgT	1169	1173	B.1.1.7	0.001047
ORF1ab/nsp16	216	R216R	cgC	cgA	3	1173	B.1.1.7	0.000003
ORF1ab/nsp16	216	R216R	cgC	cgG	1	1173	B.1.1.7	0.000001
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1133	1133	AY.4	0.001763
ORF1ab/nsp16	216	R216N	CGc	AAc	736	736	B.1.617.2	0.002771
ORF1ab/nsp16	216	R216S	Cgc	Agc	712	712	B.1.617.2	0.002681
ORF1ab/nsp16	216	R216N	CGc	AAc	653	653	AY.103	0.004055
ORF1ab/nsp16	216	R216H	cGc	cAc	605	640	AY.4	0.000942
ORF1ab/nsp16	216	R216H	cGC	cAT	35	640	AY.4	0.000054
ORF1ab/nsp16	216	R216S	Cgc	Agc	596	596	AY.4	0.000928
ORF1ab/nsp16	216	R216N	CGc	AAc	523	523	B.1.177.80	1
ORF1ab/nsp16	216	R216N	CGc	AAc	502	502	AY.23	0.035014
ORF1ab/nsp16	216	R216C	Cgc	Tgc	424	424	B.1.617.2	0.001597
ORF1ab/nsp16	216	R216N	CGc	AAc	387	387	AY.3	0.003849
ORF1ab/nsp16	216	R216S	Cgc	Agc	377	377	AY.102	0.009996
ORF1ab/nsp16	216	R216H	cGc	cAc	357	357	B.1.1.7	0.00032
ORF1ab/nsp16	216	R216N	CGc	AAc	348	348	B.1.526	0.00818
ORF1ab/nsp16	216	R216N	CGc	AAc	334	334	AY.44	0.002033
ORF1ab/nsp16	216	R216C	Cgc	Tgc	324	324	AY.103	0.002012
ORF1ab/nsp16	216	R216R	cgC	cgT	320	320	B.1.1	0.005805
ORF1ab/nsp16	216	R216R	cgC	cgT	304	306	AY.4	0.000473
ORF1ab/nsp16	216	R216R	cgC	cgA	2	306	AY.4	0.000003
ORF1ab/nsp16	216	R216C	Cgc	Tgc	301	301	AY.25	0.00181
ORF1ab/nsp16	216	R216H	cGc	cAc	297	297	P.6	0.933962
ORF1ab/nsp16	216	R216N	CGc	AAc	270	270	AY.25	0.001624
ORF1ab/nsp16	216	R216R	cgC	cgT	268	268	B.1.351.2	0.081089
ORF1ab/nsp16	216	R216C	Cgc	Tgc	267	267	B.1.1.7	0.000239
ORF1ab/nsp16	216	R216N	CGc	AAc	266	266	B.1.1.44	0.640964
ORF1ab/nsp16	216	R216N	CGc	AAc	257	257	B.1.243	0.017883
ORF1ab/nsp16	216	R216H	cGc	cAc	245	245	B.1.567	0.816667
ORF1ab/nsp16	216	R216R	cgC	cgT	238	238	B.1	0.00218
ORF1ab/nsp16	216	R216R	cgC	cgT	215	222	B.1.617.2	0.00081
ORF1ab/nsp16	216	R216R	cgC	cgA	7	222	B.1.617.2	0.000026
ORF1ab/nsp16	216	R216N	CGc	AAc	209	209	AY.105	0.134405
ORF1ab/nsp16	216	R216S	Cgc	Agc	207	207	AY.43	0.000917
ORF1ab/nsp16	216	R216C	Cgc	Tgc	206	206	AY.39	0.005091
ORF1ab/nsp16	216	R216R	cgC	cgT	204	204	AY.46	0.021232
ORF1ab/nsp16	216	R216R	cgC	cgT	201	202	AY.43	0.000891
ORF1ab/nsp16	216	R216R	cgC	cgA	1	202	AY.43	0.000004
ORF1ab/nsp16	216	R216C	Cgc	Tgc	196	197	B.1.1	0.003556
ORF1ab/nsp16	216	R216C	CgC	TgT	1	197	B.1.1	0.000018
ORF1ab/nsp16	216	R216H	cGc	cAc	179	180	B.1.617.2	0.000674
ORF1ab/nsp16	216	R216H	cGC	cAT	1	180	B.1.617.2	0.000004
ORF1ab/nsp16	216	R216N	CGc	AAc	174	174	AY.89	0.852941
ORF1ab/nsp16	216	R216N	CGc	AAc	163	163	B.1.637	0.011911
ORF1ab/nsp16	216	R216S	Cgc	Agc	159	159	AY.103	0.000987
ORF1ab/nsp16	216	R216H	cGc	cAc	155	155	B.1.1.214	0.008596
ORF1ab/nsp16	216	R216H	cGc	cAc	153	153	B.1.429	0.0036
ORF1ab/nsp16	216	R216L	cGc	cTc	150	150	All	0.000029
ORF1ab/nsp16	216	R216R	cgC	cgT	150	150	AY.25	0.000902
ORF1ab/nsp16	216	R216N	CGc	AAc	146	146	AY.43	0.000647
ORF1ab/nsp16	216	R216R	cgC	cgT	142	142	B.1.177	0.00187
ORF1ab/nsp16	216	R216del	CGC	---	127	127	All	0.000024
ORF1ab/nsp16	216	R216S	Cgc	Agc	126	126	AY.4.2	0.002733
ORF1ab/nsp16	216	R216C	Cgc	Tgc	118	118	AY.47	0.00367
ORF1ab/nsp16	216	R216N	CGc	AAc	113	113	B.1.177	0.001488
ORF1ab/nsp16	216	R216N	CGc	AAc	111	111	B.1.221	0.007885
ORF1ab/nsp16	216	R216N	CGc	AAc	108	108	AY.5	0.00223
ORF1ab/nsp16	216	R216S	Cgc	Agc	103	103	AY.44	0.000627
ORF1ab/nsp16	216	R216C	Cgc	Tgc	102	102	B.1.595	0.026618
ORF1ab/nsp16	216	R216R	cgC	cgT	89	93	AY.103	0.000553
ORF1ab/nsp16	216	R216R	cgC	cgA	4	93	AY.103	0.000025
ORF1ab/nsp16	216	R216H	cGc	cAc	91	91	AY.45	0.011073
ORF1ab/nsp16	216	R216S	Cgc	Agc	90	90	AY.98.1	0.004359
ORF1ab/nsp16	216	R216N	CGc	AAc	90	90	B.1.1	0.001633
ORF1ab/nsp16	216	R216N	CGc	AAc	89	89	AY.26	0.00252
ORF1ab/nsp16	216	R216N	CGc	AAc	89	89	B.1	0.000815
ORF1ab/nsp16	216	R216H	cGc	cAc	89	89	R.1	0.008011
ORF1ab/nsp16	216	R216S	Cgc	Agc	88	88	B.1.2	0.000775
ORF1ab/nsp16	216	R216S	Cgc	Agc	86	86	AY.25	0.000517
ORF1ab/nsp16	216	R216N	CGc	AAc	85	85	B.1.596	0.007407
ORF1ab/nsp16	216	R216R	cgC	cgT	83	85	P.1	0.001308
ORF1ab/nsp16	216	R216R	cgC	cgA	1	85	P.1	0.000016
ORF1ab/nsp16	216	R216R	cgC	cgG	1	85	P.1	0.000016
ORF1ab/nsp16	216	R216N	CGc	AAc	82	82	AY.97	0.139456
ORF1ab/nsp16	216	R216S	Cgc	Agc	81	81	AY.5	0.001673
ORF1ab/nsp16	216	R216S	Cgc	Agc	79	79	AY.47	0.002457
ORF1ab/nsp16	216	R216S	Cgc	Agc	77	77	B.1	0.000705
ORF1ab/nsp16	216	R216S	Cgc	Agc	76	76	AY.3	0.000756
ORF1ab/nsp16	216	R216N	CGc	AAc	76	76	Q.8	0.012533
ORF1ab/nsp16	216	R216R	cgC	cgT	73	74	AY.44	0.000444
ORF1ab/nsp16	216	R216R	cgC	cgA	1	74	AY.44	0.000006
ORF1ab/nsp16	216	R216R	cgC	cgT	71	71	AY.3	0.000706
ORF1ab/nsp16	216	R216N	CGc	AAc	70	70	R.1	0.006301
ORF1ab/nsp16	216	R216N	CGc	AAc	69	69	AY.29	0.001088
ORF1ab/nsp16	216	R216S	Cgc	Agc	69	69	AY.6	0.002838
ORF1ab/nsp16	216	R216H	cGc	cAc	68	68	AY.3.1	0.005798
ORF1ab/nsp16	216	R216N	CGc	AAc	66	66	AY.20	0.002565
ORF1ab/nsp16	216	R216L	cGc	cTc	66	66	AY.20	0.002565
ORF1ab/nsp16	216	R216C	Cgc	Tgc	65	65	AY.39.1	0.002575
ORF1ab/nsp16	216	R216N	CGc	AAc	64	64	AY.42	0.002575
ORF1ab/nsp16	216	R216H	cGc	cAc	64	64	AY.5	0.001322
ORF1ab/nsp16	216	R216R	cgC	cgT	62	64	C.37	0.007196
ORF1ab/nsp16	216	R216R	cgC	cgA	2	64	C.37	0.000232
ORF1ab/nsp16	216	R216S	Cgc	Agc	63	63	AY.39	0.001557
ORF1ab/nsp16	216	R216R	cgC	cgT	63	63	B.1.234	0.008312
ORF1ab/nsp16	216	R216C	Cgc	Tgc	61	61	AY.43	0.00027
ORF1ab/nsp16	216	R216N	CGc	AAc	60	60	AY.29.1	0.01323
ORF1ab/nsp16	216	R216H	cGc	cAc	59	59	AY.103	0.000366
ORF1ab/nsp16	216	R216N	CGc	AAc	59	59	B.1.429	0.001388
ORF1ab/nsp16	216	R216S	Cgc	Agc	57	57	AY.111	0.01044
ORF1ab/nsp16	216	R216N	CGc	AAc	56	56	AY.39	0.001384
ORF1ab/nsp16	216	R216R	cgC	cgT	56	56	AY.4.2	0.001215
ORF1ab/nsp16	216	R216C	Cgc	Tgc	56	56	B.1.36.26	0.16
ORF1ab/nsp16	216	R216H	cGc	cAc	54	54	AY.44	0.000329
ORF1ab/nsp16	216	R216S	Cgc	Agc	54	54	B.1.1	0.00098
ORF1ab/nsp16	216	R216S	Cgc	Agc	54	54	B.1.621	0.00478
ORF1ab/nsp16	216	R216S	Cgc	Agc	53	53	AY.84	0.023185
ORF1ab/nsp16	216	R216C	Cgc	Tgc	52	52	AY.3	0.000517
ORF1ab/nsp16	216	R216R	cgC	cgT	50	50	B.1.351	0.001486
ORF1ab/nsp16	216	R216N	CGc	AAc	49	49	B.1.177.86	0.008989
ORF1ab/nsp16	216	R216S	Cgc	Agc	48	48	AY.20	0.001866
ORF1ab/nsp16	216	R216R	cgC	cgT	47	47	AY.16	0.017844
ORF1ab/nsp16	216	R216N	CGc	AAc	47	47	AY.5.3	0.015857
ORF1ab/nsp16	216	R216H	cGc	cAc	47	47	B.1	0.00043
ORF1ab/nsp16	216	R216R	cgC	cgT	46	47	B.1.429	0.001082
ORF1ab/nsp16	216	R216R	cgC	cgA	1	47	B.1.429	0.000024
ORF1ab/nsp16	216	R216N	CGc	AAc	47	47	P.1	0.00074
ORF1ab/nsp16	216	R216C	Cgc	Tgc	46	46	AY.110	0.005184
ORF1ab/nsp16	216	R216N	CGc	AAc	46	46	AY.33	0.003072
ORF1ab/nsp16	216	R216S	Cgc	Agc	46	46	P.1	0.000725
ORF1ab/nsp16	216	R216H	cGc	cAc	45	45	AY.29	0.00071
ORF1ab/nsp16	216	R216C	Cgc	Tgc	45	45	AY.44	0.000274
ORF1ab/nsp16	216	R216C	Cgc	Tgc	45	45	B.1.429	0.001059
ORF1ab/nsp16	216	R216N	CGc	AAc	45	45	B.1.578	0.803571
ORF1ab/nsp16	216	R216C	Cgc	Tgc	45	45	P.1.16	0.016835
ORF1ab/nsp16	216	R216R	cgC	cgT	43	44	AY.119	0.001518
ORF1ab/nsp16	216	R216R	cgC	cgA	1	44	AY.119	0.000035
ORF1ab/nsp16	216	R216N	CGc	AAc	44	44	B.1.427	0.002222
ORF1ab/nsp16	216	R216N	CGc	AAc	44	44	B.1.621	0.003895
ORF1ab/nsp16	216	R216S	Cgc	Agc	43	43	B.1.177	0.000566
ORF1ab/nsp16	216	R216N	CGc	AAc	42	42	AY.117	0.00355
ORF1ab/nsp16	216	R216R	cgC	cgT	42	42	B.1.177.16	0.027907
ORF1ab/nsp16	216	R216N	CGc	AAc	41	41	AY.100	0.001886
ORF1ab/nsp16	216	R216R	cgC	cgT	41	41	B.1.526	0.000964
ORF1ab/nsp16	216	R216N	CGc	AAc	40	40	B.1.1.432	0.050633
ORF1ab/nsp16	216	R216C	Cgc	Tgc	40	40	B.1.234	0.005278
ORF1ab/nsp16	216	R216C	Cgc	Tgc	39	39	B.1.177.73	0.022084
ORF1ab/nsp16	216	R216N	CGc	AAc	39	39	B.1.258.17	0.004055
ORF1ab/nsp16	216	R216G	Cgc	Ggc	38	38	All	0.000007
ORF1ab/nsp16	216	R216N	CGc	AAc	38	38	AY.47	0.001182
ORF1ab/nsp16	216	R216H	cGc	cAc	37	37	AY.46.3	0.034547
ORF1ab/nsp16	216	R216R	cgC	cgT	37	37	B.1.509	0.032035
ORF1ab/nsp16	216	R216R	cgC	cgT	37	37	B.1.587	0.070209
ORF1ab/nsp16	216	R216F	CGc	TTc	36	36	All	0.000007
ORF1ab/nsp16	216	R216N	CGc	AAc	36	36	B.1.351	0.00107
ORF1ab/nsp16	216	R216R	cgC	cgT	35	35	AY.110	0.003944
ORF1ab/nsp16	216	R216N	CGc	AAc	35	35	AY.110	0.003944
ORF1ab/nsp16	216	R216H	cGc	cAc	35	35	AY.3	0.000348
ORF1ab/nsp16	216	R216N	CGc	AAc	35	35	AY.91	0.025566
ORF1ab/nsp16	216	R216H	cGc	cAc	35	35	B.1.177	0.000461
ORF1ab/nsp16	216	R216R	cgC	cgT	35	35	K.1	0.833333
ORF1ab/nsp16	216	R216N	CGc	AAc	34	34	AY.118	0.00213
ORF1ab/nsp16	216	R216F	CGc	TTc	34	34	B.1.2	0.000299
ORF1ab/nsp16	216	R216R	cgC	cgT	33	33	AY.29	0.000521
ORF1ab/nsp16	216	R216N	CGc	AAc	33	33	AY.6	0.001357
ORF1ab/nsp16	216	R216R	cgC	cgT	33	33	B.1.1.161	0.116608
ORF1ab/nsp16	216	R216R	cgC	cgT	33	33	B.1.1.306	0.014467
ORF1ab/nsp16	216	R216N	CGc	AAc	32	32	AY.101	0.015694
ORF1ab/nsp16	216	R216Y	CGc	TAc	31	31	All	0.000006
ORF1ab/nsp16	216	R216R	cgC	cgT	31	31	AY.102	0.000822
ORF1ab/nsp16	216	R216C	Cgc	Tgc	31	31	AY.20	0.001205
ORF1ab/nsp16	216	R216S	Cgc	Agc	30	30	AY.118	0.001879
ORF1ab/nsp16	216	R216R	cgC	cgT	30	30	B.1.1.176	0.013181
ORF1ab/nsp16	216	R216S	Cgc	Agc	30	30	B.1.258	0.001996
ORF1ab/nsp16	216	R216H	cGc	cAc	29	29	AY.46.6	0.002094
ORF1ab/nsp16	216	R216N	CGc	AAc	29	29	AY.99.2	0.002673
ORF1ab/nsp16	216	R216S	Cgc	Agc	28	28	AY.51	0.025455
ORF1ab/nsp16	216	R216R	cgC	cgT	27	28	B.1.160	0.000842
ORF1ab/nsp16	216	R216R	cgC	cgA	1	28	B.1.160	0.000031
ORF1ab/nsp16	216	R216N	CGc	AAc	26	27	A.2.5	0.012974
ORF1ab/nsp16	216	R216N	CGC	AAT	1	27	A.2.5	0.000499
ORF1ab/nsp16	216	R216N	CGc	AAc	27	27	AY.86	0.022407
ORF1ab/nsp16	216	R216N	CGc	AAc	27	27	B.1.258	0.001797
ORF1ab/nsp16	216	R216R	cgC	cgT	27	27	B.1.36.9	0.086817
ORF1ab/nsp16	216	R216N	CGc	AAc	25	25	P.1.14	0.001195
ORF1ab/nsp16	216	R216S	Cgc	Agc	24	24	AY.100	0.001104
ORF1ab/nsp16	216	R216C	Cgc	Tgc	15	24	B.1.1.519	0.000596
ORF1ab/nsp16	216	R216C	CgC	TgT	9	24	B.1.1.519	0.000357
ORF1ab/nsp16	216	R216R	cgC	cgT	23	23	AY.3.1	0.001961
ORF1ab/nsp16	216	R216N	CGc	AAc	23	23	AY.39.1	0.000911
ORF1ab/nsp16	216	R216C	Cgc	Tgc	23	23	AY.5	0.000475
ORF1ab/nsp16	216	R216R	cgC	cgT	23	23	B.1.131	0.201754
ORF1ab/nsp16	216	R216S	Cgc	Agc	23	23	B.1.93	0.021475
ORF1ab/nsp16	216	R216C	Cgc	Tgc	22	22	B.1.243	0.001531
ORF1ab/nsp16	216	R216H	cGc	cAc	22	22	B.1.258.17	0.002287
ORF1ab/nsp16	216	R216N	CGc	AAc	22	22	B.1.575	0.006675
ORF1ab/nsp16	216	R216C	Cgc	Tgc	22	22	B.1.580	0.089431
ORF1ab/nsp16	216	R216H	cGc	cAc	21	21	AY.25	0.000126
ORF1ab/nsp16	216	R216R	cgC	cgT	20	21	AY.39	0.000494
ORF1ab/nsp16	216	R216R	cgC	cgA	1	21	AY.39	0.000025
ORF1ab/nsp16	216	R216C	Cgc	Tgc	21	21	AY.98.1	0.001017
ORF1ab/nsp16	216	R216R	cgC	cgT	21	21	B.1.1.322	0.184211
ORF1ab/nsp16	216	R216S	Cgc	Agc	20	20	AY.46	0.002082
ORF1ab/nsp16	216	R216N	CGc	AAc	20	20	AY.46.6	0.001444
ORF1ab/nsp16	216	R216C	Cgc	Tgc	20	20	AY.9.2	0.000735
ORF1ab/nsp16	216	R216N	CGc	AAc	20	20	AY.98	0.00158
ORF1ab/nsp16	216	R216C	Cgc	Tgc	20	20	B.1.232	0.010747
ORF1ab/nsp16	216	R216R	cgC	cgT	20	20	B.1.427	0.00101
ORF1ab/nsp16	216	R216R	cgC	cgT	12	19	AY.100	0.000552
ORF1ab/nsp16	216	R216R	cgC	cgA	7	19	AY.100	0.000322
ORF1ab/nsp16	216	R216S	Cgc	Agc	19	19	AY.120	0.000706
ORF1ab/nsp16	216	R216S	Cgc	Agc	19	19	AY.26	0.000538
ORF1ab/nsp16	216	R216R	cgC	cgT	19	19	AY.36	0.002816
ORF1ab/nsp16	216	R216R	cgC	cgT	19	19	B.1.1.222	0.003876
ORF1ab/nsp16	216	R216C	Cgc	Tgc	19	19	B.1.1.335	0.246753
ORF1ab/nsp16	216	R216del	CGC	---	19	19	B.1.2	0.000167
ORF1ab/nsp16	216	R216S	Cgc	Agc	19	19	B.1.526	0.000447
ORF1ab/nsp16	216	R216S	Cgc	Agc	19	19	P.2	0.003546
ORF1ab/nsp16	216	R216H	cGc	cAc	18	18	AY.89	0.088235
ORF1ab/nsp16	216	R216R	cgC	cgT	18	18	AY.99.2	0.001659
ORF1ab/nsp16	216	R216H	cGc	cAc	18	18	B.1.1.28	0.005602
ORF1ab/nsp16	216	R216N	CGc	AAc	18	18	B.1.36.18	0.007563
ORF1ab/nsp16	216	R216C	Cgc	Tgc	17	17	AY.4.2	0.000369
ORF1ab/nsp16	216	R216H	cGc	cAc	17	17	AY.43	0.000075
ORF1ab/nsp16	216	R216C	Cgc	Tgc	17	17	P.1	0.000268
ORF1ab/nsp16	216	R216N	CGc	AAc	17	17	Q.1	0.002148
ORF1ab/nsp16	216	R216N	CGc	AAc	16	16	AY.116	0.004588
ORF1ab/nsp16	216	R216C	Cgc	Tgc	16	16	AY.99.2	0.001475
ORF1ab/nsp16	216	R216S	Cgc	Agc	16	16	AY.99.2	0.001475
ORF1ab/nsp16	216	R216Y	CGc	TAc	16	16	B.1.2	0.000141
ORF1ab/nsp16	216	R216R	cgC	cgT	16	16	B.1.409	0.0125
ORF1ab/nsp16	216	R216C	Cgc	Tgc	16	16	B.1.427	0.000808
ORF1ab/nsp16	216	R216S	Cgc	Agc	15	15	AY.29	0.000237
ORF1ab/nsp16	216	R216N	CGc	AAc	15	15	AY.4.5	0.001612
ORF1ab/nsp16	216	R216C	Cgc	Tgc	15	15	B	0.001917
ORF1ab/nsp16	216	R216S	Cgc	Agc	15	15	B.1.1.63	0.005787
ORF1ab/nsp16	216	R216N	CGc	AAc	15	15	B.1.149	0.05137
ORF1ab/nsp16	216	R216C	Cgc	Tgc	15	15	B.1.160	0.000468
ORF1ab/nsp16	216	R216R	cgC	cgT	14	15	B.1.2	0.000123
ORF1ab/nsp16	216	R216R	cgC	cgG	1	15	B.1.2	0.000009
ORF1ab/nsp16	216	R216N	CGc	AAc	15	15	B.1.422	0.012185
ORF1ab/nsp16	216	R216N	CGc	AAc	15	15	B.1.609	0.007191
ORF1ab/nsp16	216	R216N	CGc	AAc	14	14	AY.121	0.001894
ORF1ab/nsp16	216	R216R	cgC	cgT	14	14	AY.20	0.000544
ORF1ab/nsp16	216	R216C	Cgc	Tgc	14	14	AY.33	0.000935
ORF1ab/nsp16	216	R216R	cgC	cgT	14	14	AY.42	0.000563
ORF1ab/nsp16	216	R216N	CGc	AAc	14	14	AY.45	0.001704
ORF1ab/nsp16	216	R216R	cgC	cgT	14	14	AY.69	0.002613
ORF1ab/nsp16	216	R216H	cGc	cAc	14	14	B.1.1	0.000254
ORF1ab/nsp16	216	R216S	Cgc	Agc	14	14	B.1.177.86	0.002568
ORF1ab/nsp16	216	R216C	Cgc	Tgc	14	14	B.1.369	0.003993
ORF1ab/nsp16	216	R216S	Cgc	Agc	14	14	B.1.429	0.000329
ORF1ab/nsp16	216	R216R	cgC	cgT	14	14	B.1.525	0.001584
ORF1ab/nsp16	216	R216S	CgC	AgT	12	14	B.6	0.010919
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	14	B.6	0.00182
ORF1ab/nsp16	216	R216N	CGc	AAc	13	13	AY.116.1	0.004049
ORF1ab/nsp16	216	R216N	CGc	AAc	13	13	AY.119	0.000459
ORF1ab/nsp16	216	R216R	cgC	cgT	13	13	AY.120	0.000483
ORF1ab/nsp16	216	R216C	Cgc	Tgc	13	13	AY.29	0.000205
ORF1ab/nsp16	216	R216L	cGc	cTc	13	13	AY.4	0.00002
ORF1ab/nsp16	216	R216S	Cgc	Agc	13	13	AY.98	0.001027
ORF1ab/nsp16	216	R216S	Cgc	Agc	13	13	B.1.1.222	0.002652
ORF1ab/nsp16	216	R216R	cgC	cgT	13	13	B.1.1.317	0.005352
ORF1ab/nsp16	216	R216N	CGc	AAc	13	13	B.1.1.318	0.003923
ORF1ab/nsp16	216	R216C	Cgc	Tgc	13	13	B.1.1.326	0.022887
ORF1ab/nsp16	216	R216N	CGc	AAc	13	13	B.1.1.486	0.020505
ORF1ab/nsp16	216	R216N	CGc	AAc	13	13	B.1.160	0.000405
ORF1ab/nsp16	216	R216C	Cgc	Tgc	13	13	B.1.177	0.000171
ORF1ab/nsp16	216	R216H	cGc	cAc	13	13	B.1.311	0.003569
ORF1ab/nsp16	216	R216S	Cgc	Agc	13	13	B.1.311	0.003569
ORF1ab/nsp16	216	R216C	Cgc	Tgc	13	13	B.1.396	0.009174
ORF1ab/nsp16	216	R216N	CGc	AAc	13	13	B.1.438.1	0.001394
ORF1ab/nsp16	216	R216R	cgC	cgT	13	13	B.1.596	0.001133
ORF1ab/nsp16	216	R216R	cgC	cgT	13	13	P.1.13	0.01168
ORF1ab/nsp16	216	R216R	cgC	cgT	13	13	P.1.15	0.00302
ORF1ab/nsp16	216	R216N	CGc	AAc	12	12	AY.113	0.001709
ORF1ab/nsp16	216	R216S	Cgc	Agc	12	12	AY.119	0.000424
ORF1ab/nsp16	216	R216N	CGc	AAc	12	12	AY.61	0.001257
ORF1ab/nsp16	216	R216N	CGc	AAc	12	12	B.1.1.434	0.004183
ORF1ab/nsp16	216	R216S	Cgc	Agc	12	12	B.1.12	0.096
ORF1ab/nsp16	216	R216R	cgC	cgT	12	12	B.1.214.3	0.085714
ORF1ab/nsp16	216	R216R	cgC	cgT	12	12	B.1.36	0.001751
ORF1ab/nsp16	216	R216C	Cgc	Tgc	12	12	B.1.582	0.005888
ORF1ab/nsp16	216	R216H	cGc	cAc	12	12	P.1	0.000189
ORF1ab/nsp16	216	R216N	CGc	AAc	12	12	Q.7	0.013333
ORF1ab/nsp16	216	R216P	cGc	cCc	10	11	All	0.000002
ORF1ab/nsp16	216	R216P	cGC	cCG	1	11	All	0
ORF1ab/nsp16	216	R216R	cgC	cgT	11	11	AY.117	0.00093
ORF1ab/nsp16	216	R216N	CGc	AAc	11	11	AY.120	0.000409
ORF1ab/nsp16	216	R216R	cgC	cgT	11	11	AY.26	0.000311
ORF1ab/nsp16	216	R216L	cGc	cTc	11	11	AY.26	0.000311
ORF1ab/nsp16	216	R216R	cgC	cgT	11	11	AY.33	0.000735
ORF1ab/nsp16	216	R216H	cGc	cAc	11	11	AY.4.2	0.000239
ORF1ab/nsp16	216	R216del	CGC	---	11	11	AY.43	0.000049
ORF1ab/nsp16	216	R216H	cGc	cAc	11	11	AY.75	0.000616
ORF1ab/nsp16	216	R216del	CGC	---	11	11	B.1	0.000101
ORF1ab/nsp16	216	R216R	cgC	cgT	11	11	B.1.1.304	0.030899
ORF1ab/nsp16	216	R216N	CGc	AAc	11	11	B.1.36.26	0.031429
ORF1ab/nsp16	216	R216C	Cgc	Tgc	11	11	B.1.564	0.004685
ORF1ab/nsp16	216	R216C	Cgc	Tgc	11	11	B.1.576	0.009973
ORF1ab/nsp16	216	R216R	cgC	cgT	11	11	B.1.621	0.000974
ORF1ab/nsp16	216	R216R	cgC	cgT	11	11	C.36	0.010018
ORF1ab/nsp16	216	R216N	CGc	AAc	11	11	P.1.12	0.005324
ORF1ab/nsp16	216	R216S	Cgc	Agc	11	11	P.1.14	0.000526
ORF1ab/nsp16	216	R216R	cgC	cgT	10	10	A.21	0.027701
ORF1ab/nsp16	216	R216R	cgC	cgT	10	10	AY.111	0.001832
ORF1ab/nsp16	216	R216C	Cgc	Tgc	10	10	AY.116.1	0.003114
ORF1ab/nsp16	216	R216C	Cgc	Tgc	10	10	AY.4.5	0.001075
ORF1ab/nsp16	216	R216G	Cgc	Ggc	10	10	AY.47	0.000311
ORF1ab/nsp16	216	R216N	CGc	AAc	10	10	AY.55	0.009174
ORF1ab/nsp16	216	R216R	cgC	cgT	10	10	AY.75	0.00056
ORF1ab/nsp16	216	R216H	cGc	cAc	10	10	AY.98.1	0.000484
ORF1ab/nsp16	216	R216R	cgC	cgT	10	10	B.1.1.33	0.004209
ORF1ab/nsp16	216	R216del	CGC	---	10	10	B.1.1.7	0.000009
ORF1ab/nsp16	216	R216R	cgC	cgT	10	10	B.1.177.24	0.012953
ORF1ab/nsp16	216	R216C	Cgc	Tgc	10	10	B.1.206	0.008157
ORF1ab/nsp16	216	R216R	cgC	cgT	9	10	B.1.258	0.000599
ORF1ab/nsp16	216	R216R	cgC	cgG	1	10	B.1.258	0.000067
ORF1ab/nsp16	216	R216N	CGc	AAc	10	10	B.1.258.3	0.01675
ORF1ab/nsp16	216	R216N	CGc	AAc	10	10	B.1.351.5	0.005995
ORF1ab/nsp16	216	R216N	CGc	AAc	10	10	B.1.409	0.007812
ORF1ab/nsp16	216	R216H	cGc	cAc	10	10	B.1.409	0.007812
ORF1ab/nsp16	216	R216R	cgC	cgT	10	10	B.1.565	0.008104
ORF1ab/nsp16	216	R216N	CGc	AAc	10	10	C.36.3	0.005672
ORF1ab/nsp16	216	R216N	CGc	AAc	9	9	AE.8	0.004401
ORF1ab/nsp16	216	R216S	Cgc	Agc	9	9	AY.104	0.017857
ORF1ab/nsp16	216	R216C	Cgc	Tgc	9	9	AY.26	0.000255
ORF1ab/nsp16	216	R216N	CGc	AAc	9	9	AY.27	0.000582
ORF1ab/nsp16	216	R216C	Cgc	Tgc	9	9	AY.46.6	0.00065
ORF1ab/nsp16	216	R216N	CGc	AAc	9	9	AY.98.1	0.000436
ORF1ab/nsp16	216	R216L	cGc	cTc	9	9	B.1.1.214	0.000499
ORF1ab/nsp16	216	R216C	Cgc	Tgc	9	9	B.1.1.275	0.101124
ORF1ab/nsp16	216	R216R	cgC	cgT	9	9	B.1.1.28	0.002801
ORF1ab/nsp16	216	R216R	cgC	cgT	9	9	B.1.1.284	0.000967
ORF1ab/nsp16	216	R216R	cgC	cgT	9	9	B.1.1.412	0.068702
ORF1ab/nsp16	216	R216L	cGc	cTc	9	9	B.1.177	0.000119
ORF1ab/nsp16	216	R216R	cgC	cgT	9	9	B.1.311	0.002471
ORF1ab/nsp16	216	R216C	Cgc	Tgc	9	9	B.1.311	0.002471
ORF1ab/nsp16	216	R216C	Cgc	Tgc	9	9	B.1.36	0.001313
ORF1ab/nsp16	216	R216N	CGc	AAc	9	9	B.1.408	0.03321
ORF1ab/nsp16	216	R216H	cGc	cAc	9	9	B.1.471	0.02459
ORF1ab/nsp16	216	R216C	Cgc	Tgc	9	9	B.1.561	0.003573
ORF1ab/nsp16	216	R216C	Cgc	Tgc	9	9	B.1.567	0.03
ORF1ab/nsp16	216	R216N	CGc	AAc	9	9	B.1.595	0.002349
ORF1ab/nsp16	216	R216C	Cgc	Tgc	9	9	B.1.612	0.023873
ORF1ab/nsp16	216	R216C	Cgc	Tgc	9	9	B.1.621	0.000797
ORF1ab/nsp16	216	R216N	CGc	AAc	9	9	C.8	0.040179
ORF1ab/nsp16	216	R216C	Cgc	Tgc	8	8	AY.118	0.000501
ORF1ab/nsp16	216	R216C	Cgc	Tgc	8	8	AY.23	0.000558
ORF1ab/nsp16	216	R216R	cgC	cgT	8	8	AY.23	0.000558
ORF1ab/nsp16	216	R216S	Cgc	Agc	8	8	AY.3.1	0.000682
ORF1ab/nsp16	216	R216C	Cgc	Tgc	8	8	AY.3.1	0.000682
ORF1ab/nsp16	216	R216H	cGc	cAc	8	8	AY.33	0.000534
ORF1ab/nsp16	216	R216C	Cgc	Tgc	8	8	AY.34	0.000776
ORF1ab/nsp16	216	R216N	CGc	AAc	8	8	AY.36	0.001186
ORF1ab/nsp16	216	R216R	cgC	cgT	8	8	AY.45	0.000973
ORF1ab/nsp16	216	R216S	Cgc	Agc	8	8	AY.45	0.000973
ORF1ab/nsp16	216	R216H	cGc	cAc	8	8	AY.6	0.000329
ORF1ab/nsp16	216	R216R	cgC	cgT	8	8	AY.74	0.000925
ORF1ab/nsp16	216	R216S	Cgc	Agc	8	8	AY.75	0.000448
ORF1ab/nsp16	216	R216N	CGc	AAc	8	8	AY.9.1	0.00067
ORF1ab/nsp16	216	R216S	Cgc	Agc	8	8	AY.91	0.005844
ORF1ab/nsp16	216	R216R	cgC	cgT	7	8	B.1.1.220	0.013011
ORF1ab/nsp16	216	R216R	cgC	cgG	1	8	B.1.1.220	0.001859
ORF1ab/nsp16	216	R216N	CGc	AAc	8	8	B.1.1.317	0.003294
ORF1ab/nsp16	216	R216S	Cgc	Agc	8	8	B.1.1.39	0.004077
ORF1ab/nsp16	216	R216H	cGc	cAc	8	8	B.1.1.417	0.021622
ORF1ab/nsp16	216	R216L	cGc	cTc	8	8	B.1.1.7	0.000007
ORF1ab/nsp16	216	R216N	CGc	AAc	8	8	B.1.36	0.001167
ORF1ab/nsp16	216	R216N	CGc	AAc	8	8	B.1.369	0.002282
ORF1ab/nsp16	216	R216N	CGc	AAc	8	8	B.1.416.1	0.0125
ORF1ab/nsp16	216	R216N	CGc	AAc	8	8	B.1.525	0.000905
ORF1ab/nsp16	216	R216R	cgC	cgT	8	8	B.1.575.1	0.019512
ORF1ab/nsp16	216	R216H	cGc	cAc	8	8	B.1.637	0.000585
ORF1ab/nsp16	216	R216C	Cgc	Tgc	8	8	B.1.637	0.000585
ORF1ab/nsp16	216	R216R	cgC	cgT	8	8	P.2	0.001493
ORF1ab/nsp16	216	R216N	CGc	AAc	7	7	AY.102	0.000186
ORF1ab/nsp16	216	R216C	Cgc	Tgc	7	7	AY.114	0.001618
ORF1ab/nsp16	216	R216H	cGc	cAc	7	7	AY.121	0.000947
ORF1ab/nsp16	216	R216H	cGc	cAc	7	7	AY.20	0.000272
ORF1ab/nsp16	216	R216S	Cgc	Agc	7	7	AY.46.6	0.000505
ORF1ab/nsp16	216	R216R	cgC	cgT	6	7	AY.5	0.000124
ORF1ab/nsp16	216	R216R	cgC	cgA	1	7	AY.5	0.000021
ORF1ab/nsp16	216	R216R	cgC	cgT	7	7	AY.54	0.000667
ORF1ab/nsp16	216	R216N	CGc	AAc	7	7	AY.85	0.00299
ORF1ab/nsp16	216	R216S	Cgc	Agc	7	7	AY.9.2	0.000257
ORF1ab/nsp16	216	R216N	CGc	AAc	7	7	AY.9.2	0.000257
ORF1ab/nsp16	216	R216Y	CGc	TAc	7	7	B.1	0.000064
ORF1ab/nsp16	216	R216C	Cgc	Tgc	7	7	B.1.1.28	0.002179
ORF1ab/nsp16	216	R216R	cgC	cgT	7	7	B.1.1.326	0.012324
ORF1ab/nsp16	216	R216H	cGc	cAc	7	7	B.1.1.50	0.004752
ORF1ab/nsp16	216	R216R	cgC	cgT	7	7	B.1.1.523	0.010937
ORF1ab/nsp16	216	R216N	CGc	AAc	7	7	B.1.177.57	0.001967
ORF1ab/nsp16	216	R216N	CGc	AAc	7	7	B.1.177.7	0.001154
ORF1ab/nsp16	216	R216N	CGc	AAc	7	7	B.1.466.2	0.002739
ORF1ab/nsp16	216	R216C	Cgc	Tgc	7	7	B.1.525	0.000792
ORF1ab/nsp16	216	R216C	Cgc	Tgc	7	7	B.1.577	0.004811
ORF1ab/nsp16	216	R216N	CGc	AAc	7	7	B.1.577	0.004811
ORF1ab/nsp16	216	R216R	cgC	cgT	7	7	B.1.609	0.003356
ORF1ab/nsp16	216	R216del	CGC	---	7	7	P.1	0.00011
ORF1ab/nsp16	216	R216N	CGc	AAc	7	7	P.2	0.001306
ORF1ab/nsp16	216	R216N	CGc	AAc	7	7	Q.2	0.004294
ORF1ab/nsp16	216	R216S	Cgc	Agc	6	6	A.2	0.003971
ORF1ab/nsp16	216	R216S	Cgc	Agc	6	6	AY.106	0.002009
ORF1ab/nsp16	216	R216C	Cgc	Tgc	6	6	AY.117	0.000507
ORF1ab/nsp16	216	R216S	Cgc	Agc	6	6	AY.117	0.000507
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	AY.4.2.1	0.000894
ORF1ab/nsp16	216	R216C	Cgc	Tgc	6	6	AY.45	0.00073
ORF1ab/nsp16	216	R216C	Cgc	Tgc	6	6	AY.46	0.000624
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	AY.46.5	0.00119
ORF1ab/nsp16	216	R216S	Cgc	Agc	6	6	AY.5.3	0.002024
ORF1ab/nsp16	216	R216S	Cgc	Agc	6	6	AY.5.4	0.00166
ORF1ab/nsp16	216	R216S	Cgc	Agc	6	6	AY.54	0.000572
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	AY.59	0.003178
ORF1ab/nsp16	216	R216R	cgC	cgT	6	6	AY.6	0.000247
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	AY.75	0.000336
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	AY.9	0.000406
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	AY.92	0.001724
ORF1ab/nsp16	216	R216S	Cgc	Agc	6	6	AY.93	0.001638
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	AY.95	0.004566
ORF1ab/nsp16	216	R216H	cGc	cAc	6	6	AZ.2	0.004926
ORF1ab/nsp16	216	R216L	cGc	cTc	6	6	B.1	0.000055
ORF1ab/nsp16	216	R216H	cGc	cAc	6	6	B.1.1.284	0.000644
ORF1ab/nsp16	216	R216R	cgC	cgT	6	6	B.1.1.301	0.007075
ORF1ab/nsp16	216	R216R	cgC	cgT	6	6	B.1.1.485	0.1
ORF1ab/nsp16	216	R216C	Cgc	Tgc	6	6	B.1.1.507	0.052174
ORF1ab/nsp16	216	R216S	Cgc	Agc	6	6	B.1.160	0.000187
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	B.1.177.81	0.001136
ORF1ab/nsp16	216	R216H	cGc	cAc	6	6	B.1.2	0.000053
ORF1ab/nsp16	216	R216R	cgC	cgT	6	6	B.1.201	0.034091
ORF1ab/nsp16	216	R216R	cgC	cgT	6	6	B.1.221	0.000426
ORF1ab/nsp16	216	R216R	cgC	cgT	6	6	B.1.232	0.003224
ORF1ab/nsp16	216	R216C	Cgc	Tgc	6	6	B.1.239	0.007326
ORF1ab/nsp16	216	R216C	Cgc	Tgc	6	6	B.1.240	0.001293
ORF1ab/nsp16	216	R216H	cGc	cAc	5	6	B.1.258	0.000333
ORF1ab/nsp16	216	R216H	cGC	cAT	1	6	B.1.258	0.000067
ORF1ab/nsp16	216	R216C	Cgc	Tgc	6	6	B.1.284	0.078947
ORF1ab/nsp16	216	R216C	Cgc	Tgc	6	6	B.1.349	0.004289
ORF1ab/nsp16	216	R216H	cGc	cAc	6	6	B.1.351	0.000178
ORF1ab/nsp16	216	R216C	Cgc	Tgc	6	6	B.1.36.18	0.002521
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	B.1.621.1	0.003035
ORF1ab/nsp16	216	R216S	Cgc	Agc	6	6	B.1.637	0.000438
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	C.37	0.000696
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	P.1.17	0.000971
ORF1ab/nsp16	216	R216R	cgC	cgT	6	6	Q.1	0.000758
ORF1ab/nsp16	216	R216N	CGc	AAc	6	6	Q.3	0.00087
ORF1ab/nsp16	216	R216H	cGc	cAc	6	6	Q.8	0.000989
ORF1ab/nsp16	216	R216C	Cgc	Tgc	6	6	R.1	0.00054
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	A.2.5	0.002495
ORF1ab/nsp16	216	R216C	Cgc	Tgc	5	5	AY.102	0.000133
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	AY.113	0.000712
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	AY.116.1	0.001557
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	AY.118	0.000313
ORF1ab/nsp16	216	R216S	Cgc	Agc	5	5	AY.13	0.000805
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	AY.13	0.000805
ORF1ab/nsp16	216	R216S	Cgc	Agc	5	5	AY.23	0.000349
ORF1ab/nsp16	216	R216S	Cgc	Agc	5	5	AY.28	0.009452
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	AY.30	0.001979
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	AY.34.1	0.00255
ORF1ab/nsp16	216	R216S	Cgc	Agc	5	5	AY.36	0.000741
ORF1ab/nsp16	216	R216H	cGc	cAc	5	5	AY.39	0.000124
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	AY.4.5	0.000537
ORF1ab/nsp16	216	R216C	Cgc	Tgc	5	5	AY.42	0.000201
ORF1ab/nsp16	216	R216S	Cgc	Agc	5	5	AY.46.2	0.003177
ORF1ab/nsp16	216	R216C	Cgc	Tgc	5	5	AY.46.5	0.000992
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	AY.46.6	0.000361
ORF1ab/nsp16	216	R216H	cGc	cAc	5	5	AY.47	0.000156
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	AY.54	0.000477
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	AY.61	0.000524
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	AY.79	0.006053
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	AY.8	0.00303
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	AY.9.2	0.000184
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	5	B.1.1.1	0.001307
ORF1ab/nsp16	216	R216S	CgC	AgT	1	5	B.1.1.1	0.000327
ORF1ab/nsp16	216	R216H	cGc	cAc	5	5	B.1.1.174	0.016892
ORF1ab/nsp16	216	R216H	cGc	cAc	5	5	B.1.1.189	0.007564
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	B.1.1.306	0.002192
ORF1ab/nsp16	216	R216S	Cgc	Agc	5	5	B.1.1.322	0.04386
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	B.1.1.329	0.019231
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	B.1.177.21	0.000382
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	B.1.177.28	0.037037
ORF1ab/nsp16	216	R216S	Cgc	Agc	5	5	B.1.206	0.004078
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	B.1.243	0.000348
ORF1ab/nsp16	216	R216H	cGc	cAc	5	5	B.1.346	0.006553
ORF1ab/nsp16	216	R216S	Cgc	Agc	5	5	B.1.351	0.000149
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	B.1.351.5	0.002998
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	B.1.36.29	0.002587
ORF1ab/nsp16	216	R216C	Cgc	Tgc	5	5	B.1.361	0.006443
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	B.1.530	0.035714
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	B.1.568	0.005556
ORF1ab/nsp16	216	R216S	Cgc	Agc	5	5	B.1.587	0.009488
ORF1ab/nsp16	216	R216del	CGC	---	5	5	B.1.617.2	0.000019
ORF1ab/nsp16	216	R216G	Cgc	Ggc	5	5	B.1.617.2	0.000019
ORF1ab/nsp16	216	R216H	cGc	cAc	5	5	B.1.621	0.000443
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	B.1.639	0.108696
ORF1ab/nsp16	216	R216R	cgC	cgT	4	5	B.6	0.00364
ORF1ab/nsp16	216	R216R	cgC	cgA	1	5	B.6	0.00091
ORF1ab/nsp16	216	R216R	cgC	cgT	5	5	C.17	0.277778
ORF1ab/nsp16	216	R216N	CGc	AAc	5	5	D.2	0.000375
ORF1ab/nsp16	216	R216X	CGC	TAA	2	4		0.111111
ORF1ab/nsp16	216	R216X	CgC	TgA	2	4		0.111111
ORF1ab/nsp16	216	R216X	CGC	TAA	2	4	All	0
ORF1ab/nsp16	216	R216X	CgC	TgA	2	4	All	0
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	AU.2	0.009685
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	AY.109	0.002959
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	AY.111	0.000733
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	AY.113	0.00057
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	AY.114	0.000924
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	AY.119	0.000141
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	AY.120.1	0.001284
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	AY.30	0.001583
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	AY.36	0.000593
ORF1ab/nsp16	216	R216R	cgC	cgT	2	4	AY.38	0.000999
ORF1ab/nsp16	216	R216R	cgC	cgA	2	4	AY.38	0.000999
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	AY.4.4	0.001637
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	AY.41	0.001176
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	AY.46	0.000416
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	AY.46.2	0.002541
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	AY.46.4	0.000658
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	AY.47	0.000124
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	AY.56	0.006421
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	AY.72	0.005442
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	AY.75	0.000224
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	AY.79	0.004843
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	AY.93	0.001092
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	AY.95	0.003044
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	AY.97	0.006803
ORF1ab/nsp16	216	R216G	Cgc	Ggc	4	4	AY.99	0.004197
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	AZ.2	0.003284
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	B.1.1.1	0.001307
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	B.1.1.214	0.000222
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	B.1.1.28	0.001245
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	B.1.1.28	0.001245
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	B.1.1.288	0.007663
ORF1ab/nsp16	216	R216H	cGc	cAc	4	4	B.1.1.317	0.001647
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	B.1.1.37	0.000771
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	B.1.1.434	0.001394
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	B.1.1.526	0.014184
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	B.1.111	0.0047
ORF1ab/nsp16	216	R216G	Cgc	Ggc	4	4	B.1.177	0.000053
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	B.1.177.53	0.009569
ORF1ab/nsp16	216	R216H	cGc	cAc	4	4	B.1.177.57	0.001124
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	B.1.177.74	0.060606
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	B.1.177.86	0.000734
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	B.1.221	0.000284
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	B.1.234	0.000528
ORF1ab/nsp16	216	R216H	cGc	cAc	4	4	B.1.243	0.000278
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	B.1.243	0.000278
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	B.1.258.17	0.000416
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	B.1.324	0.006421
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	B.1.346	0.005242
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	B.1.349	0.002859
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	B.1.351	0.000119
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	B.1.381	0.03125
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	B.1.391	0.00451
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	B.1.427	0.000202
ORF1ab/nsp16	216	R216H	cGc	cAc	4	4	B.1.428	0.004082
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	B.1.438.1	0.000429
ORF1ab/nsp16	216	R216del	CGC	---	4	4	B.1.525	0.000453
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	B.1.525	0.000453
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	B.1.551	0.005161
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	B.1.561	0.001588
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	B.1.564	0.001704
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	B.1.575.1	0.009756
ORF1ab/nsp16	216	R216C	Cgc	Tgc	4	4	B.1.590	0.018182
ORF1ab/nsp16	216	R216S	Cgc	Agc	4	4	B.1.595	0.001044
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	B.1.617.1	0.000516
ORF1ab/nsp16	216	R216L	cGc	cTc	4	4	B.1.617.2	0.000015
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	B.1.623	0.002146
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	C.35	0.003096
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	C.38	0.032258
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	P.1.14	0.000191
ORF1ab/nsp16	216	R216N	CGc	AAc	4	4	P.6	0.012579
ORF1ab/nsp16	216	R216R	cgC	cgT	4	4	Q.8	0.00066
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3		0.166667
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	A.1	0.000846
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	A.2.5.1	0.014423
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	A.23.1	0.002113
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	AD.2	0.000657
ORF1ab/nsp16	216	R216del1	cGc	c-c	2	3	All	0
ORF1ab/nsp16	216	R216del1	CgC	Tg-	1	3	All	0
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	AY.100	0.000138
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	AY.105	0.001929
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	AY.113	0.000427
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	AY.116	0.00086
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	AY.120	0.000112
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	AY.16	0.001139
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	AY.23	0.000209
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	AY.29.1	0.000662
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	AY.34	0.000291
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	AY.34	0.000291
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	AY.34	0.000291
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	AY.35	0.000699
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	AY.35	0.000699
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	AY.39.1	0.000119
ORF1ab/nsp16	216	R216del	CGC	---	3	3	AY.4	0.000005
ORF1ab/nsp16	216	R216G	Cgc	Ggc	3	3	AY.4	0.000005
ORF1ab/nsp16	216	R216L	cGc	cTc	3	3	AY.4.2	0.000065
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	AY.4.5	0.000322
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	AY.42	0.000121
ORF1ab/nsp16	216	R216L	cGc	cTc	3	3	AY.44	0.000018
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	AY.46.1	0.00308
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	AY.5.4	0.00083
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	AY.62	0.001307
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	AY.69	0.00056
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	AY.7.2	0.001678
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	AY.75.1	0.000541
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	AY.76	0.014493
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	AY.83	0.005172
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	AY.84	0.001312
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	AY.86	0.00249
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	AY.88	0.002653
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	AY.9	0.000203
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	AY.9	0.000203
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	AY.98	0.000237
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	AY.98.1	0.000145
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	AZ.4	0.010067
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	B	0.000383
ORF1ab/nsp16	216	R216P	cGc	cCc	3	3	B.1	0.000027
ORF1ab/nsp16	216	R216del	CGC	---	3	3	B.1.1	0.000054
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	3	B.1.1.161	0.007067
ORF1ab/nsp16	216	R216C	CgC	TgT	1	3	B.1.1.161	0.003534
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	B.1.1.171	0.011029
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	B.1.1.214	0.000166
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	B.1.1.214	0.000166
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	B.1.1.241	0.006211
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	B.1.1.251	0.02381
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.1.301	0.003538
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.1.33	0.001263
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.1.397	0.006757
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.1.434	0.001046
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	B.1.1.487	0.01676
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.111	0.003525
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.139	0.002199
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.177.35	0.002073
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.177.79	0.007026
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.210	0.006397
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.221.1	0.008721
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.234	0.000396
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.240	0.000647
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.306	0.017143
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.336	0.007317
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	B.1.36	0.000438
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.36.38	0.004926
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.375	0.002459
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.375	0.002459
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.400	0.001287
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.404	0.003906
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	B.1.427	0.000151
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	B.1.438.1	0.000322
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	B.1.466.2	0.001174
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.497	0.000944
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	B.1.499	0.003151
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.517	0.001281
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	B.1.526	0.000071
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.526	0.000071
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.541	0.013274
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	B.1.564	0.001278
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.569	0.043478
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	B.1.581	0.028302
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	B.1.582	0.001472
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	B.1.595	0.000783
ORF1ab/nsp16	216	R216del	CGC	---	3	3	B.1.596	0.000261
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	B.1.617.1	0.000387
ORF1ab/nsp16	216	R216N	CGc	AAc	3	3	B.1.619	0.002613
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	B.1.623	0.001609
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	C.37	0.000348
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	C.37	0.000348
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	P.1.14	0.000143
ORF1ab/nsp16	216	R216S	Cgc	Agc	3	3	P.1.15	0.000697
ORF1ab/nsp16	216	R216R	cgC	cgT	3	3	P.1.17	0.000485
ORF1ab/nsp16	216	R216C	Cgc	Tgc	3	3	P.2	0.00056
ORF1ab/nsp16	216	R216H	cGc	cAc	3	3	Q.2	0.00184
ORF1ab/nsp16	216	R216Q	cGC	cAA	2	2		0.111111
ORF1ab/nsp16	216	R216Y	CGc	TAc	2	2		0.111111
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2		0.111111
ORF1ab/nsp16	216	R216del	CGC	---	2	2		0.111111
ORF1ab/nsp16	216	R216R	cgC	cgA	2	2		0.111111
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	A.1	0.000564
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	A.2.3	0.009479
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	A.2.5	0.000998
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	A.2.5	0.000998
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	A.2.5.2	0.003145
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	A.21	0.00554
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	A.23.1	0.001408
ORF1ab/nsp16	216	R216Q	cGC	cAA	2	2	All	0
ORF1ab/nsp16	216	R216T	CGc	ACc	2	2	All	0
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.1	0.000791
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.10	0.00106
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.102	0.000053
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.104	0.003968
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.106	0.00067
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.107	0.000932
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.108	0.002205
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.108	0.002205
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.108	0.002205
ORF1ab/nsp16	216	R216del	CGC	---	2	2	AY.110	0.000225
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.110	0.000225
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	AY.110	0.000225
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.116	0.000574
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.118	0.000125
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.119	0.000071
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.120	0.000074
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.120.1	0.000642
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.120.1	0.000642
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	AY.121	0.000271
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.121	0.000271
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.13	0.000322
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	AY.16	0.000759
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.23.1	0.000835
ORF1ab/nsp16	216	R216del	CGC	---	2	2	AY.25	0.000012
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.26	0.000057
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.30	0.000791
ORF1ab/nsp16	216	R216del	CGC	---	2	2	AY.33	0.000134
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	AY.34.1	0.00102
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.37	0.000632
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.39.2	0.003082
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.4.2.1	0.000298
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.4.5	0.000215
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.40	0.001929
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.41	0.000588
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.42	0.00008
ORF1ab/nsp16	216	R216L	cGc	cTc	2	2	AY.43	0.000009
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.46	0.000208
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	AY.46.1	0.002053
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.46.2	0.001271
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.46.3	0.001867
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.46.5	0.000397
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.46.5	0.000397
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.55	0.001835
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.57	0.001312
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.6	0.000082
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.62	0.000871
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.62	0.000871
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.63	0.000774
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.65	0.001066
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	AY.68	0.000547
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.7	0.000392
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.7.2	0.001119
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.70	0.000417
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.75.1	0.000361
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	AY.75.1	0.000361
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.77	0.002255
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	AY.88	0.001768
ORF1ab/nsp16	216	R216L	cGc	cTc	2	2	AY.89	0.009804
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.9	0.000135
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	AY.9.1	0.000167
ORF1ab/nsp16	216	R216R	cgC	cgA	1	2	AY.9.1	0.000084
ORF1ab/nsp16	216	R216R	cgC	cgT	1	2	AY.9.1	0.000084
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.92	0.000575
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	AY.93	0.000546
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	AY.93	0.000546
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	AY.95	0.001522
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.96	0.004149
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.98	0.000158
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	AY.99	0.002099
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B	0.000256
ORF1ab/nsp16	216	R216F	CGc	TTc	2	2	B.1	0.000018
ORF1ab/nsp16	216	R216G	Cgc	Ggc	2	2	B.1.1	0.000036
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.1	0.000653
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.135	0.00939
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.1.141	0.004024
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.157	0.001826
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.189	0.003026
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.189	0.003026
ORF1ab/nsp16	216	R216Y	CGc	TAc	2	2	B.1.1.192	0.004619
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.198	0.002937
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.1.210	0.011429
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.216	0.001781
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.220	0.003717
ORF1ab/nsp16	216	R216P	cGc	cCc	1	2	B.1.1.220	0.001859
ORF1ab/nsp16	216	R216P	cGC	cCG	1	2	B.1.1.220	0.001859
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.1.222	0.000408
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.222	0.000408
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.228	0.006098
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.236	0.013793
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.25	0.001137
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.25	0.001137
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.1.258	0.006515
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.269	0.002706
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.277	0.001517
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.297	0.004474
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.305	0.007722
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.1.1.306	0.000877
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.1.1.318	0.000604
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.1.318	0.000604
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.329	0.007692
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.1.33	0.000842
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.335	0.025974
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.348	0.001592
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.1.354	0.008772
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.1.37	0.000386
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.372	0.001377
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.410	0.074074
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.1.420	0.002012
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.442	0.037037
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.507	0.017391
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.1.63	0.000772
ORF1ab/nsp16	216	R216G	Cgc	Ggc	2	2	B.1.1.7	0.000002
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.1.83	0.00542
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.111	0.00235
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.12	0.016
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.126	0.002551
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.157	0.00597
ORF1ab/nsp16	216	R216del	CGC	---	2	2	B.1.177	0.000026
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.177.10	0.001756
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.177.11	0.003396
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.1.177.12	0.000303
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.177.12	0.000303
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	2	B.1.177.12	0.000152
ORF1ab/nsp16	216	R216S	CgC	AgT	1	2	B.1.177.12	0.000152
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.177.15	0.001262
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.177.21	0.000153
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.177.43	0.002954
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.177.54	0.001213
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.177.60	0.000437
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.177.7	0.00033
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.177.7	0.00033
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.177.73	0.001133
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.177.73	0.001133
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.177.75	0.002081
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.177.8	0.001505
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.177.83	0.002963
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.177.87	0.001456
ORF1ab/nsp16	216	R216del1	cGc	c-c	1	2	B.1.2	0.000009
ORF1ab/nsp16	216	R216del1	CgC	Tg-	1	2	B.1.2	0.000009
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.1.221	0.000142
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.221.3	0.001667
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.241	0.001623
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.241	0.001623
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.258	0.000133
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.258.17	0.000208
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.258.24	0.021505
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.258.3	0.00335
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.279	0.001027
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.289	0.005319
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.305	0.004301
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.336	0.004878
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.337	0.011173
ORF1ab/nsp16	216	R216del	CGC	---	2	2	B.1.351	0.000059
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.1.36	0.000292
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.36.16	0.002849
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.36.17	0.000988
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.1.36.29	0.001035
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.1.36.36	0.001204
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.36.8	0.002
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.361	0.002577
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.367	0.001585
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.369	0.00057
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.370	0.016
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.378	0.013699
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.395	0.014085
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.399	0.003868
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.404	0.002604
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.1.438.1	0.000215
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.516	0.003914
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.517	0.000854
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.521	0.00995
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.521	0.00995
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.1.525	0.000226
ORF1ab/nsp16	216	R216del	CGC	---	2	2	B.1.526	0.000047
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.546	0.007407
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.550	0.027397
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.565	0.001621
ORF1ab/nsp16	216	R216Y	CGc	TAc	2	2	B.1.567	0.006667
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.568	0.002222
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.575	0.000607
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.575	0.000607
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.576	0.001813
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.577	0.001375
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.1.577	0.001375
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.587	0.003795
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.589	0.015152
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.1.596	0.000174
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.596	0.000174
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.602	0.013072
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.616	0.04878
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.617.1	0.000258
ORF1ab/nsp16	216	R216del	CGC	---	2	2	B.1.617.1	0.000258
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.623	0.001073
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	B.1.623	0.001073
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.625	0.004706
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	B.1.631	0.006734
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	B.1.70	0.04878
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	B.1.78	0.017094
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	B.46	0.041667
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	C.2	0.032258
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	C.36.3	0.001134
ORF1ab/nsp16	216	R216del	CGC	---	2	2	C.37	0.000232
ORF1ab/nsp16	216	R216L	cGc	cTc	2	2	D.2	0.00015
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	D.5	0.00995
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	N.5	0.003534
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	P.1.10	0.000539
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	P.1.12	0.000968
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	P.1.12	0.000968
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	P.1.12	0.000968
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	P.1.14	0.000096
ORF1ab/nsp16	216	R216del	CGC	---	2	2	P.1.15	0.000465
ORF1ab/nsp16	216	R216C	Cgc	Tgc	2	2	P.1.15	0.000465
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	P.1.17	0.000324
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	P.1.6	0.003891
ORF1ab/nsp16	216	R216H	cGc	cAc	2	2	P.1.7	0.000639
ORF1ab/nsp16	216	R216R	cgC	cgT	2	2	P.1.7	0.000639
ORF1ab/nsp16	216	R216N	CGc	AAc	2	2	P.1.8	0.009569
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	Q.1	0.000253
ORF1ab/nsp16	216	R216S	Cgc	Agc	2	2	Q.8	0.00033
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	A	0.000387
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	A	0.000387
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	A.1	0.000282
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	A.19	0.009434
ORF1ab/nsp16	216	R216R	cgC	cgA	1	1	A.2	0.000662
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	A.2	0.000662
ORF1ab/nsp16	216	R216del	CGC	---	1	1	A.2.4	0.003367
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	A.2.5	0.000499
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	A.2.5.2	0.001572
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	A.2.5.2	0.001572
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	A.2.5.2	0.001572
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	A.2.5.2	0.001572
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	A.27	0.001656
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	A.28	0.002646
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	A.3	0.002096
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AA.8	0.022222
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AD.2	0.000219
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AD.2	0.000219
ORF1ab/nsp16	216	R216del2	cGC	c--	1	1	All	0
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AU.3	0.00211
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AU.3	0.00211
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AV.1	0.005051
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AW.1	0.003049
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	AY.1	0.000396
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.100	0.000046
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.100	0.000046
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.101	0.00049
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.101	0.00049
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.102	0.000027
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.104	0.001984
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.105	0.000643
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.106	0.000335
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.107	0.000466
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.107	0.000466
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.108	0.001103
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.109	0.00074
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.111	0.000183
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.111	0.000183
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.114	0.000231
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.114	0.000231
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.114	0.000231
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.115	0.005208
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.116	0.000287
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.116	0.000287
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.116.1	0.000311
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	AY.120	0.000037
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.120.1	0.000321
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.13	0.000161
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.14	0.000088
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.14	0.000088
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.16	0.00038
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.16	0.00038
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.16.1	0.00047
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.19	0.00114
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.19	0.00114
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.21	0.001898
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.24	0.000431
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.26	0.000028
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.27	0.000065
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.27	0.000065
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.28	0.00189
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.29.1	0.000221
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.3	0.00001
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.30	0.000396
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.32	0.000532
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.33	0.000067
ORF1ab/nsp16	216	R216G	Cgc	Ggc	1	1	AY.34	0.000097
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.34.1	0.00051
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.37	0.000316
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.37	0.000316
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.37	0.000316
ORF1ab/nsp16	216	R216T	CGc	ACc	1	1	AY.39	0.000025
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.39	0.000025
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.39.1	0.00004
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.39.1	0.00004
ORF1ab/nsp16	216	R216G	Cgc	Ggc	1	1	AY.4.2	0.000022
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.4.2.1	0.000149
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.4.3	0.000842
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.4.4	0.000409
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.4.5	0.000107
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.41	0.000294
ORF1ab/nsp16	216	R216G	Cgc	Ggc	1	1	AY.42	0.00004
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.44	0.000006
ORF1ab/nsp16	216	R216G	Cgc	Ggc	1	1	AY.46	0.000104
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.46.4	0.000165
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.46.4	0.000165
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.46.4	0.000165
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.48	0.000465
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.48	0.000465
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.48	0.000465
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	AY.5	0.000021
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.5.1	0.003759
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.5.3	0.000337
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.50	0.000799
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.50	0.000799
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.54	0.000095
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.55	0.000917
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.55	0.000917
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.58	0.000907
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.59	0.00053
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.59	0.00053
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.60	0.000938
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.61	0.000105
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.61	0.000105
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.64	0.000595
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.64	0.000595
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.65	0.000533
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.67	0.000464
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.67	0.000464
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.68	0.000274
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.68	0.000274
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.68	0.000274
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.7	0.000196
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.7.1	0.000113
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.71	0.000475
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.71	0.000475
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	AY.71	0.000475
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.71	0.000475
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.72	0.001361
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.73	0.000665
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.73	0.000665
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.74	0.000116
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.75.1	0.00018
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.77	0.001127
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.78	0.001541
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.79	0.001211
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.8	0.000606
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.82	0.001357
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.84	0.000437
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.85	0.000427
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.85	0.000427
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.85	0.000427
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.86	0.00083
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	AY.86	0.00083
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	AY.87	0.000833
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.9	0.000068
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.9.1	0.000084
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.9.1	0.000084
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.9.2	0.000037
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.9.2.1	0.001976
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.9.2.1	0.001976
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.90	0.000684
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AY.91	0.00073
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.91	0.00073
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	AY.91	0.00073
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.92	0.000287
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.95	0.000761
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	AY.98	0.000079
ORF1ab/nsp16	216	R216del	CGC	---	1	1	AY.99	0.001049
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AY.99.1	0.001553
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	AZ.2	0.000821
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	AZ.3	0.00152
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B	0.000128
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B	0.000128
ORF1ab/nsp16	216	R216del1	cGc	c-c	1	1	B.1	0.000009
ORF1ab/nsp16	216	R216G	Cgc	Ggc	1	1	B.1	0.000009
ORF1ab/nsp16	216	R216P	cGc	cCc	1	1	B.1.1	0.000018
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.1	0.000327
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.1	0.000327
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.10	0.001115
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.10	0.001115
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.111	0.014706
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.121	0.002427
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.141	0.002012
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.153	0.001095
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.157	0.000913
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.158	0.012195
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.159	0.004673
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.159	0.004673
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.160	0.02381
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.174	0.003378
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.175	0.076923
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.176	0.000439
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.186	0.003436
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.189	0.001513
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.192	0.002309
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.192	0.002309
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.198	0.001468
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.198	0.001468
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.198	0.001468
ORF1ab/nsp16	216	R216R	cgC	cgG	1	1	B.1.1.205	0.003717
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.216	0.00089
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.220	0.001859
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.222	0.000204
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.230	0.009174
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.231	0.003096
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.243	0.004082
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.25	0.000569
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.261	0.008621
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.263	0.001558
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.279	0.001121
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.282	0.011628
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.291	0.000742
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.291	0.000742
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.294	0.001266
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.298	0.000862
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.301	0.001179
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.305	0.003861
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.307	0.002532
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.316	0.000925
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.317	0.000412
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.317	0.000412
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.318	0.000302
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.322	0.008772
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.326	0.001761
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.326	0.001761
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.329	0.003846
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.333	0.001076
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.334	0.016393
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.343	0.020833
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.348	0.000796
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.355	0.015385
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.369	0.000446
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.37	0.000193
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.372	0.000689
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.384	0.02381
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.387	0.058824
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.39	0.00051
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.39	0.00051
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.407	0.041667
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.411	0.014706
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.420	0.001006
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.421	0.030303
ORF1ab/nsp16	216	R216R	cgC	cgG	1	1	B.1.1.422	0.045455
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.424	0.045455
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.429	0.004608
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.432	0.001266
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.462	0.008621
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.486	0.001577
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.5	0.008333
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.50	0.000679
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.50	0.000679
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.50	0.000679
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	B.1.1.514	0.038462
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.518	0.006329
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.1.519	0.00004
ORF1ab/nsp16	216	R216H	cGC	cAT	1	1	B.1.1.519	0.00004
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.523	0.001563
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.525	0.005464
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.54	0.003021
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.63	0.000386
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.63	0.000386
ORF1ab/nsp16	216	R216del2	cGC	c--	1	1	B.1.1.7	0.000001
ORF1ab/nsp16	216	R216P	cGc	cCc	1	1	B.1.1.7	0.000001
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.70	0.000341
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.70	0.000341
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.70	0.000341
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.71	0.006061
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.1.74	0.00431
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.1.74	0.00431
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.74	0.00431
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.1.83	0.00271
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.1.95	0.019608
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.1.99	0.02381
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.103	0.019231
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.104	0.00369
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	B.1.106	0.03125
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.110.3	0.000718
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.110.3	0.000718
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.119	0.010526
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.128	0.000635
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.139	0.000733
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.147	0.000756
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.147	0.000756
ORF1ab/nsp16	216	R216Y	CGc	TAc	1	1	B.1.157	0.002985
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.160	0.000031
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.160.14	0.002119
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.160.14	0.002119
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.160.26	0.002421
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.160.8	0.001289
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	B.1.160.9	0.007194
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.177.12	0.000152
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.177.16	0.000664
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.177.19	0.001431
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.177.2	0.004545
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.177.2	0.004545
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.177.2	0.004545
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.177.21	0.000076
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	B.1.177.31	0.011494
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.177.32	0.00135
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.177.32	0.00135
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.177.32	0.00135
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.177.4	0.000211
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.177.41	0.0025
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.177.42	0.000894
ORF1ab/nsp16	216	R216P	cGc	cCc	1	1	B.1.177.44	0.000519
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.177.46	0.000918
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.177.48	0.003125
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.177.50	0.004695
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.177.50	0.004695
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.177.51	0.004566
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.177.57	0.000281
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.177.58	0.001332
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.177.59	0.016129
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.177.60	0.000218
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.177.60	0.000218
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.177.60	0.000218
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.177.68	0.015152
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.177.69	0.001484
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.177.69	0.001484
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.177.7	0.000165
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.177.7	0.000165
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.177.73	0.000566
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.177.73	0.000566
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.177.81	0.000189
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.177.81	0.000189
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.177.81	0.000189
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.177.82	0.000477
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.177.86	0.000183
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.177.87	0.000728
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.177.9	0.001332
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.177.9	0.001332
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.179	0.003759
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.189	0.004292
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.189	0.004292
ORF1ab/nsp16	216	R216P	cGc	cCc	1	1	B.1.2	0.000009
ORF1ab/nsp16	216	R216T	CGc	ACc	1	1	B.1.2	0.000009
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.206	0.000816
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	B.1.206	0.000816
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.214.2	0.0006
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.218	0.005155
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.221	0.000071
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	B.1.221	0.000071
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.236	0.002053
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.237	0.004975
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.239	0.001221
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.247	0.014925
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.248	0.029412
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.258	0.000067
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.258.11	0.000396
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.258.11	0.000396
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.258.12	0.007874
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.258.14	0.00098
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.258.17	0.000104
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.258.21	0.007752
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.258.6	0.019608
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.258.7	0.001912
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.258.9	0.005
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.265	0.001271
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.279	0.000514
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.279	0.000514
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.279	0.000514
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.280	0.007143
ORF1ab/nsp16	216	R216R	cgC	cgA	1	1	B.1.284	0.013158
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.293	0.0125
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.298	0.002114
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.308	0.034483
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.310	0.047619
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.311	0.000275
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.320	0.001245
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.330	0.028571
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.340	0.004292
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.35	0.008475
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.350	0.002933
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.350	0.002933
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.350	0.002933
ORF1ab/nsp16	216	R216G	Cgc	Ggc	1	1	B.1.351	0.00003
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.351.2	0.000303
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.351.2	0.000303
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.351.3	0.000876
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.356	0.001727
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.36.1	0.00114
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.36.10	0.004785
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.36.17	0.000494
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.36.18	0.00042
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.36.19	0.009259
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.36.29	0.000517
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.36.31	0.001751
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.36.36	0.000602
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.36.38	0.001642
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.36.39	0.002217
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.36.39	0.002217
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.36.7	0.004
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.361	0.001289
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.362	0.001541
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.362	0.001541
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.369	0.000285
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.369	0.000285
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.380	0.006623
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.381	0.007812
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.391	0.001127
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.397	0.004854
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.398	0.002976
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.398	0.002976
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.403	0.003268
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.406	0.006061
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.409	0.000781
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.411	0.003704
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.413	0.004255
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.416	0.001269
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.416.1	0.001563
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.423	0.010204
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.424	0.008065
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.425	0.002994
ORF1ab/nsp16	216	R216G	Cgc	Ggc	1	1	B.1.428	0.00102
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.428	0.00102
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.428	0.00102
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.429	0.000024
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.433	0.003195
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.437	0.020833
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.438.1	0.000107
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.443	0.004673
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.459	0.004082
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.468	0.005714
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.469	0.00361
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.470	0.001404
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.471	0.002732
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.473	0.019231
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.474	0.001901
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.476	0.1
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.499.1	0.111111
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.517	0.000427
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.523	0.002451
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.523	0.002451
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.523	0.002451
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.524	0.001406
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.533	0.009615
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.537	0.02
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.539	0.017544
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.543	0.01
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.544	0.006024
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.547	0.02439
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.551	0.00129
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.551	0.00129
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.556	0.007519
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.561	0.000397
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.564	0.000426
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.564.1	0.001577
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.564.1	0.001577
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.566	0.019231
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.574	0.002151
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.574	0.002151
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.575.1	0.002439
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.576	0.000907
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.582	0.000491
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.588	0.00091
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.588	0.00091
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.588	0.00091
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.588	0.00091
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.592	0.04
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.593	0.01087
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.595	0.000261
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.595.1	0.005848
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.595.2	0.04
ORF1ab/nsp16	216	R216Y	CGc	TAc	1	1	B.1.596	0.000087
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.597	0.00463
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.597	0.00463
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.600	0.005848
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.602	0.006536
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.605	0.005952
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.609	0.000479
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.611	0.04
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.620	0.000946
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.620	0.000946
ORF1ab/nsp16	216	R216del	CGC	---	1	1	B.1.621	0.000089
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.621.1	0.000506
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.621.1	0.000506
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.623	0.000536
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.625	0.002353
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.625	0.002353
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.628	0.000352
ORF1ab/nsp16	216	R216L	cGc	cTc	1	1	B.1.628	0.000352
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.632	0.006711
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.637	0.000073
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.1.70	0.02439
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.1.8	0.001972
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.81	0.021277
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.88.1	0.004808
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.9.5	0.005682
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.1.91	0.002075
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	B.1.93	0.000934
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.1.93	0.000934
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.40	0.000364
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.40	0.000364
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	B.6.6	0.000889
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	B.6.6	0.000889
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	B.6.6	0.000889
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	B.61	0.005747
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	C.23	0.005814
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	C.26	0.007353
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	C.36	0.000911
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	C.36	0.000911
ORF1ab/nsp16	216	R216G	Cgc	Ggc	1	1	C.36.3	0.000567
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	C.36.3	0.000567
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	C.36.3	0.000567
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	C.5	0.090909
ORF1ab/nsp16	216	R216R	cgC	cgA	1	1	D.2	0.000075
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	D.2	0.000075
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	N.3	0.005814
ORF1ab/nsp16	216	R216P	cGc	cCc	1	1	P.1	0.000016
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	P.1.1	0.000318
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	P.1.1	0.000318
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	P.1.10	0.000269
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	P.1.10	0.000269
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	P.1.10	0.000269
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	P.1.10.1	0.00813
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	P.1.13	0.000898
ORF1ab/nsp16	216	R216P	cGc	cCc	1	1	P.1.14	0.000048
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	P.1.15	0.000232
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	P.1.16	0.000374
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	P.1.17.1	0.000875
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	P.1.2	0.001156
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	P.1.4	0.000977
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	P.1.4	0.000977
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	P.1.7	0.000319
ORF1ab/nsp16	216	R216del	CGC	---	1	1	P.1.7	0.000319
ORF1ab/nsp16	216	R216N	CGc	AAc	1	1	P.1.7	0.000319
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	P.7	0.004367
ORF1ab/nsp16	216	R216H	cGc	cAc	1	1	Q.1	0.000126
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	Q.2	0.000613
ORF1ab/nsp16	216	R216R	cgC	cgT	1	1	Q.3	0.000145
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	Q.3	0.000145
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	Q.4	0.000455
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	Q.5	0.016949
ORF1ab/nsp16	216	R216S	Cgc	Agc	1	1	Q.7	0.001111
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	Q.7	0.001111
ORF1ab/nsp16	216	R216C	Cgc	Tgc	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.