CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 213

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16213G213NG7011NnonsynGGcAAc10141014121295-21297
ORF1ab/nsp16213G213SG7011SnonsynGgcAgc731731121295-21297
ORF1ab/nsp16213G213CG7011CnonsynGgcTgc639639121295-21297
ORF1ab/nsp16213G213GG7011GsynggCggT5784620.79930821295-21297
ORF1ab/nsp16213G213GG7011GsynggCggA5781100.19031121295-21297
ORF1ab/nsp16213G213GG7011GsynggCggG57860.010380621295-21297
ORF1ab/nsp16213G213DG7011DnonsyngGcgAc2462440.9918721295-21297
ORF1ab/nsp16213G213DG7011DnonsyngGCgAT24620.0081300821295-21297
ORF1ab/nsp16213G213delG7011deldelGGC---137137121295-21297
ORF1ab/nsp16213G213VG7011VnonsyngGcgTc3737121295-21297
ORF1ab/nsp16213G213RG7011RnonsynGgcCgc77121295-21297
ORF1ab/nsp16213G213del1G7011del1delGgc-gc740.57142921295-21297
ORF1ab/nsp16213G213del1G7011del1delggCgg-710.14285721295-21297
ORF1ab/nsp16213G213del1G7011del1delGGC-NN710.14285721295-21297
ORF1ab/nsp16213G213del1G7011del1delGgCAg-710.14285721295-21297
ORF1ab/nsp16213G213YG7011YnonsynGGcTAc430.7521295-21297
ORF1ab/nsp16213G213YG7011YnonsynGGCTAT410.2521295-21297
ORF1ab/nsp16213G213EG7011EnonsyngGCgAG22121295-21297
ORF1ab/nsp16213G213PG7011PnonsynGGcCCc11121295-21297
ORF1ab/nsp16213G213AG7011AnonsyngGcgCc11121295-21297

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16213G213NGGcAAc10141014All0.000194
ORF1ab/nsp16213G213SGgcAgc731731All0.00014
ORF1ab/nsp16213G213CGgcTgc639639All0.000122
ORF1ab/nsp16213G213GggCggT462578All0.000088
ORF1ab/nsp16213G213GggCggA110578All0.000021
ORF1ab/nsp16213G213GggCggG6578All0.000001
ORF1ab/nsp16213G213GggCggT238272B.1.1.70.000213
ORF1ab/nsp16213G213GggCggA34272B.1.1.70.00003
ORF1ab/nsp16213G213DgGcgAc244246All0.000047
ORF1ab/nsp16213G213DgGCgAT2246All0
ORF1ab/nsp16213G213CGgcTgc234234B.1.221.40.975
ORF1ab/nsp16213G213SGgcAgc188188AY.4.2.10.02801
ORF1ab/nsp16213G213NGGcAAc188188B.1.1.70.000168
ORF1ab/nsp16213G213SGgcAgc154154B.1.1.70.000138
ORF1ab/nsp16213G213delGGC---137137All0.000026
ORF1ab/nsp16213G213CGgcTgc130130B.1.2210.009234
ORF1ab/nsp16213G213SGgcAgc129129B.1.10.00234
ORF1ab/nsp16213G213NGGcAAc127127AY.40.000198
ORF1ab/nsp16213G213NGGcAAc100100B.10.000916
ORF1ab/nsp16213G213SGgcAgc8989AY.430.000394
ORF1ab/nsp16213G213NGGcAAc8282B.1.5180.964706
ORF1ab/nsp16213G213CGgcTgc5454B.1.1.70.000048
ORF1ab/nsp16213G213NGGcAAc5151AY.250.000307
ORF1ab/nsp16213G213NGGcAAc4747B.1.177.810.008898
ORF1ab/nsp16213G213CGgcTgc4646AY.40.000072
ORF1ab/nsp16213G213VgGcgTc3737All0.000007
ORF1ab/nsp16213G213SGgcAgc3535B.1.20.000308
ORF1ab/nsp16213G213DgGcgAc3434B.1.1.70.00003
ORF1ab/nsp16213G213GggCggT3030R.10.0027
ORF1ab/nsp16213G213NGGcAAc2929B.1.617.20.000109
ORF1ab/nsp16213G213NGGcAAc2828AY.1030.000174
ORF1ab/nsp16213G213GggCggT2626B.1.466.20.010172
ORF1ab/nsp16213G213NGGcAAc2626P.10.00041
ORF1ab/nsp16213G213DgGcgAc2525AY.40.000039
ORF1ab/nsp16213G213NGGcAAc2121AY.430.000093
ORF1ab/nsp16213G213GggCggT1920AY.440.000116
ORF1ab/nsp16213G213GggCggA120AY.440.000006
ORF1ab/nsp16213G213SGgcAgc2020B.1.617.20.000075
ORF1ab/nsp16213G213CGgcTgc2020B.1.617.20.000075
ORF1ab/nsp16213G213delGGC---1919B.1.20.000167
ORF1ab/nsp16213G213NGGcAAc1717B.1.1.2200.031599
ORF1ab/nsp16213G213GggCggA917B.1.1770.000119
ORF1ab/nsp16213G213GggCggT817B.1.1770.000105
ORF1ab/nsp16213G213CGgcTgc1717B.1.2430.001183
ORF1ab/nsp16213G213GggCggT1717B.1.5750.005158
ORF1ab/nsp16213G213DgGcgAc1415B.10.000128
ORF1ab/nsp16213G213DgGCgAT115B.10.000009
ORF1ab/nsp16213G213DgGcgAc1515B.1.1770.000198
ORF1ab/nsp16213G213NGGcAAc1515B.1.2580.000998
ORF1ab/nsp16213G213NGGcAAc1515B.1.4270.000757
ORF1ab/nsp16213G213DgGcgAc1515B.1.617.20.000056
ORF1ab/nsp16213G213GggCggA1414AY.1180.000877
ORF1ab/nsp16213G213NGGcAAc1414AY.98.10.000678
ORF1ab/nsp16213G213NGGcAAc1414B.1.3690.003993
ORF1ab/nsp16213G213DgGcgAc1313B.1.20.000114
ORF1ab/nsp16213G213GggCggT1313B.1.30.034031
ORF1ab/nsp16213G213SGgcAgc1212AY.40.000019
ORF1ab/nsp16213G213GggCggA612B.10.000055
ORF1ab/nsp16213G213GggCggT412B.10.000037
ORF1ab/nsp16213G213GggCggG212B.10.000018
ORF1ab/nsp16213G213NGGcAAc1212B.1.177.600.002621
ORF1ab/nsp16213G213GggCggA911AY.390.000222
ORF1ab/nsp16213G213GggCggT211AY.390.000049
ORF1ab/nsp16213G213delGGC---1111AY.430.000049
ORF1ab/nsp16213G213CGgcTgc1111AY.430.000049
ORF1ab/nsp16213G213NGGcAAc1111AY.50.000227
ORF1ab/nsp16213G213delGGC---1111B.10.000101
ORF1ab/nsp16213G213delGGC---1111B.1.1.70.00001
ORF1ab/nsp16213G213NGGcAAc1111B.1.1600.000343
ORF1ab/nsp16213G213CGgcTgc1010AY.1030.000062
ORF1ab/nsp16213G213SGgcAgc1010AY.200.000389
ORF1ab/nsp16213G213NGGcAAc1010AY.440.000061
ORF1ab/nsp16213G213CGgcTgc1010B.1.10.000181
ORF1ab/nsp16213G213GggCggT810B.1.617.20.00003
ORF1ab/nsp16213G213GggCggA210B.1.617.20.000008
ORF1ab/nsp16213G213GggCggT99A.270.014901
ORF1ab/nsp16213G213CGgcTgc99AY.250.000054
ORF1ab/nsp16213G213GggCggT69AY.40.000009
ORF1ab/nsp16213G213GggCggA39AY.40.000005
ORF1ab/nsp16213G213GggCggT99AY.470.00028
ORF1ab/nsp16213G213DgGcgAc99B.1.177.340.473684
ORF1ab/nsp16213G213DgGcgAc88AY.430.000035
ORF1ab/nsp16213G213NGGcAAc88B.1.3110.002197
ORF1ab/nsp16213G213RGgcCgc77All0.000001
ORF1ab/nsp16213G213del1Ggc-gc47All0.000001
ORF1ab/nsp16213G213del1ggCgg-17All0
ORF1ab/nsp16213G213del1GgCAg-17All0
ORF1ab/nsp16213G213del1GGC-NN17All0
ORF1ab/nsp16213G213CGgcTgc77AY.1020.000186
ORF1ab/nsp16213G213NGGcAAc77AY.1200.00026
ORF1ab/nsp16213G213NGGcAAc77AY.290.00011
ORF1ab/nsp16213G213DgGcgAc77AY.440.000043
ORF1ab/nsp16213G213SGgcAgc77B.10.000064
ORF1ab/nsp16213G213NGGcAAc77B.1.10.000127
ORF1ab/nsp16213G213NGGcAAc77B.1.617.10.000903
ORF1ab/nsp16213G213delGGC---77P.10.00011
ORF1ab/nsp16213G213NGGcAAc66AY.200.000233
ORF1ab/nsp16213G213GggCggA46AY.30.00004
ORF1ab/nsp16213G213GggCggT26AY.30.00002
ORF1ab/nsp16213G213GggCggT66B.1.10.000109
ORF1ab/nsp16213G213CGgcTgc66B.1.258.110.002378
ORF1ab/nsp16213G213NGGcAAc66B.1.3490.004289
ORF1ab/nsp16213G213SGgcAgc66B.1.351.30.005259
ORF1ab/nsp16213G213delGGC---66B.1.5250.000679
ORF1ab/nsp16213G213NGGcAAc66B.1.5260.000141
ORF1ab/nsp16213G213delGGC---66B.1.617.20.000023
ORF1ab/nsp16213G213SGgcAgc66P.10.000095
ORF1ab/nsp16213G213DgGcgAc66P.10.000095
ORF1ab/nsp16213G213GggCggT45AY.1190.000141
ORF1ab/nsp16213G213GggCggA15AY.1190.000035
ORF1ab/nsp16213G213SGgcAgc55AY.330.000334
ORF1ab/nsp16213G213CGgcTgc55AY.440.00003
ORF1ab/nsp16213G213NGGcAAc55AY.46.40.000823
ORF1ab/nsp16213G213GggCggT55AY.760.024155
ORF1ab/nsp16213G213NGGcAAc55B.1.1.3180.001509
ORF1ab/nsp16213G213VgGcgTc55B.1.1.70.000004
ORF1ab/nsp16213G213NGGcAAc55B.1.1110.005875
ORF1ab/nsp16213G213NGGcAAc55B.1.1770.000066
ORF1ab/nsp16213G213GggCggT35B.1.20.000026
ORF1ab/nsp16213G213GggCggA25B.1.20.000018
ORF1ab/nsp16213G213NGGcAAc55B.1.4290.000118
ORF1ab/nsp16213G213GggCggA55B.1.5960.000436
ORF1ab/nsp16213G213YGGcTAc34All0.000001
ORF1ab/nsp16213G213YGGCTAT14All0
ORF1ab/nsp16213G213NGGcAAc44AY.1000.000184
ORF1ab/nsp16213G213GggCggT24AY.1030.000012
ORF1ab/nsp16213G213GggCggA24AY.1030.000012
ORF1ab/nsp16213G213GggCggT44AY.250.000024
ORF1ab/nsp16213G213SGgcAgc44AY.250.000024
ORF1ab/nsp16213G213CGgcTgc44AY.290.000063
ORF1ab/nsp16213G213VgGcgTc44AY.290.000063
ORF1ab/nsp16213G213NGGcAAc44AY.30.00004
ORF1ab/nsp16213G213DgGcgAc44AY.50.000083
ORF1ab/nsp16213G213VgGcgTc44B.10.000037
ORF1ab/nsp16213G213delGGC---44B.1.10.000073
ORF1ab/nsp16213G213DgGcgAc44B.1.10.000073
ORF1ab/nsp16213G213NGGcAAc44B.1.1.250.002274
ORF1ab/nsp16213G213NGGcAAc44B.1.160.90.028777
ORF1ab/nsp16213G213SGgcAgc44B.1.1770.000053
ORF1ab/nsp16213G213DgGcgAc44B.1.177.210.000306
ORF1ab/nsp16213G213CGgcTgc44B.1.20.000035
ORF1ab/nsp16213G213DgGcgAc44B.1.4530.012945
ORF1ab/nsp16213G213SGgcAgc44B.1.617.10.000516
ORF1ab/nsp16213G213NGGcAAc44C.370.000464
ORF1ab/nsp16213G213CGgcTgc44P.10.000063
ORF1ab/nsp16213G213GggCggT44P.10.000063
ORF1ab/nsp16213G213NGGcAAc33AY.1020.00008
ORF1ab/nsp16213G213DgGcgAc33AY.1030.000019
ORF1ab/nsp16213G213CGgcTgc33AY.160.001139
ORF1ab/nsp16213G213NGGcAAc33AY.260.000085
ORF1ab/nsp16213G213DgGcgAc33AY.30.00003
ORF1ab/nsp16213G213NGGcAAc33AY.340.000291
ORF1ab/nsp16213G213NGGcAAc33AY.390.000074
ORF1ab/nsp16213G213delGGC---33AY.40.000005
ORF1ab/nsp16213G213SGgcAgc33AY.440.000018
ORF1ab/nsp16213G213DgGcgAc33AY.590.001589
ORF1ab/nsp16213G213DgGcgAc33AY.60.000123
ORF1ab/nsp16213G213NGGcAAc33AY.870.002498
ORF1ab/nsp16213G213DgGcgAc33AY.980.000237
ORF1ab/nsp16213G213NGGcAAc33B.1.1.2070.003546
ORF1ab/nsp16213G213GggCggT33B.1.1.260.015707
ORF1ab/nsp16213G213DgGcgAc33B.1.1.3060.001315
ORF1ab/nsp16213G213NGGcAAc33B.1.1.5190.000119
ORF1ab/nsp16213G213SGgcAgc33B.1.177.860.00055
ORF1ab/nsp16213G213DgGcgAc33B.1.2430.000209
ORF1ab/nsp16213G213DgGcgAc33B.1.2580.0002
ORF1ab/nsp16213G213CGgcTgc33B.1.4270.000151
ORF1ab/nsp16213G213DgGcgAc33B.1.4290.000071
ORF1ab/nsp16213G213delGGC---33B.1.5260.000071
ORF1ab/nsp16213G213NGGcAAc33B.1.5750.00091
ORF1ab/nsp16213G213delGGC---33B.1.5960.000261
ORF1ab/nsp16213G213GggCggA33C.36.30.001702
ORF1ab/nsp16213G213NGGcAAc33Q.80.000495
ORF1ab/nsp16213G213SGgcAgc220.111111
ORF1ab/nsp16213G213delGGC---220.111111
ORF1ab/nsp16213G213DgGcgAc22A.60.010256
ORF1ab/nsp16213G213EgGCgAG22All0
ORF1ab/nsp16213G213delGGC---22AY.1100.000225
ORF1ab/nsp16213G213SGgcAgc22AY.1110.000366
ORF1ab/nsp16213G213DgGcgAc22AY.1130.000285
ORF1ab/nsp16213G213CGgcTgc22AY.1180.000125
ORF1ab/nsp16213G213NGGcAAc22AY.20.000712
ORF1ab/nsp16213G213GggCggT12AY.200.000039
ORF1ab/nsp16213G213GggCggA12AY.200.000039
ORF1ab/nsp16213G213NGGcAAc22AY.230.000139
ORF1ab/nsp16213G213EgGCgAG22AY.250.000012
ORF1ab/nsp16213G213delGGC---22AY.250.000012
ORF1ab/nsp16213G213SGgcAgc22AY.260.000057
ORF1ab/nsp16213G213CGgcTgc22AY.260.000057
ORF1ab/nsp16213G213GggCggT12AY.290.000016
ORF1ab/nsp16213G213GggCggA12AY.290.000016
ORF1ab/nsp16213G213delGGC---22AY.330.000134
ORF1ab/nsp16213G213CGgcTgc22AY.390.000049
ORF1ab/nsp16213G213NGGcAAc22AY.39.10.000079
ORF1ab/nsp16213G213VgGcgTc22AY.40.000003
ORF1ab/nsp16213G213DgGcgAc22AY.4.20.000043
ORF1ab/nsp16213G213SGgcAgc22AY.4.20.000043
ORF1ab/nsp16213G213NGGcAAc22AY.4.2.10.000298
ORF1ab/nsp16213G213NGGcAAc22AY.420.00008
ORF1ab/nsp16213G213VgGcgTc22AY.430.000009
ORF1ab/nsp16213G213del1Ggc-gc22AY.440.000012
ORF1ab/nsp16213G213CGgcTgc22AY.46.60.000144
ORF1ab/nsp16213G213SGgcAgc22AY.50.000041
ORF1ab/nsp16213G213VgGcgTc22AY.50.000041
ORF1ab/nsp16213G213NGGcAAc22AY.540.000191
ORF1ab/nsp16213G213NGGcAAc22AY.60.000082
ORF1ab/nsp16213G213NGGcAAc22AY.630.000774
ORF1ab/nsp16213G213NGGcAAc22AY.750.000112
ORF1ab/nsp16213G213DgGcgAc22AY.9.20.000073
ORF1ab/nsp16213G213NGGcAAc22AY.99.20.000184
ORF1ab/nsp16213G213SGgcAgc22AY.99.20.000184
ORF1ab/nsp16213G213SGgcAgc22B0.000256
ORF1ab/nsp16213G213CGgcTgc22B.1.1.3720.001377
ORF1ab/nsp16213G213DgGcgAc22B.1.1.5210.010695
ORF1ab/nsp16213G213GggCggG12B.1.1.700.000341
ORF1ab/nsp16213G213GggCggT12B.1.1.700.000341
ORF1ab/nsp16213G213VgGcgTc22B.1.1770.000026
ORF1ab/nsp16213G213delGGC---22B.1.1770.000026
ORF1ab/nsp16213G213DgGcgAc22B.1.177.180.00232
ORF1ab/nsp16213G213GggCggT22B.1.177.570.000562
ORF1ab/nsp16213G213CGgcTgc22B.1.177.90.002663
ORF1ab/nsp16213G213RGgcCgc22B.1.20.000018
ORF1ab/nsp16213G213DgGcgAc22B.1.2200.021739
ORF1ab/nsp16213G213delGGC---22B.1.2580.000133
ORF1ab/nsp16213G213DgGcgAc22B.1.2650.002541
ORF1ab/nsp16213G213NGGcAAc22B.1.3510.000059
ORF1ab/nsp16213G213delGGC---22B.1.3510.000059
ORF1ab/nsp16213G213SGgcAgc22B.1.3510.000059
ORF1ab/nsp16213G213GggCggT22B.1.360.000292
ORF1ab/nsp16213G213GggCggT22B.1.3690.00057
ORF1ab/nsp16213G213CGgcTgc22B.1.4290.000047
ORF1ab/nsp16213G213YGGcTAc22B.1.4290.000047
ORF1ab/nsp16213G213CGgcTgc22B.1.466.20.000782
ORF1ab/nsp16213G213GggCggT22B.1.4700.002809
ORF1ab/nsp16213G213SGgcAgc22B.1.4800.004975
ORF1ab/nsp16213G213GggCggT22B.1.5260.000047
ORF1ab/nsp16213G213DgGcgAc22B.1.5260.000047
ORF1ab/nsp16213G213GggCggA12B.1.5950.000261
ORF1ab/nsp16213G213GggCggT12B.1.5950.000261
ORF1ab/nsp16213G213DgGcgAc22B.1.5960.000174
ORF1ab/nsp16213G213GggCggT12B.1.6090.000479
ORF1ab/nsp16213G213GggCggG12B.1.6090.000479
ORF1ab/nsp16213G213delGGC---22B.1.617.10.000258
ORF1ab/nsp16213G213VgGcgTc22B.1.617.20.000008
ORF1ab/nsp16213G213CGgcTgc22B.1.6350.035088
ORF1ab/nsp16213G213CGgcTgc22B.60.00182
ORF1ab/nsp16213G213delGGC---22C.370.000232
ORF1ab/nsp16213G213CGgcTgc22C.370.000232
ORF1ab/nsp16213G213CGgcTgc22P.1.10.000635
ORF1ab/nsp16213G213delGGC---22P.1.150.000465
ORF1ab/nsp16213G213delGGC---22P.1.70.000639
ORF1ab/nsp16213G213NGGcAAc22P.20.000373
ORF1ab/nsp16213G213NGGcAAc22P.30.00319
ORF1ab/nsp16213G213GggCggT11A.10.000282
ORF1ab/nsp16213G213CGgcTgc11A.2.20.001689
ORF1ab/nsp16213G213delGGC---11A.2.40.003367
ORF1ab/nsp16213G213SGgcAgc11A.2.40.003367
ORF1ab/nsp16213G213NGGcAAc11AE.80.000489
ORF1ab/nsp16213G213AgGcgCc11All0
ORF1ab/nsp16213G213PGGcCCc11All0
ORF1ab/nsp16213G213GggCggT11AT.10.005128
ORF1ab/nsp16213G213delGGC---11AV.10.005051
ORF1ab/nsp16213G213GggCggA11AY.1000.000046
ORF1ab/nsp16213G213delGGC---11AY.1000.000046
ORF1ab/nsp16213G213delGGC---11AY.1020.000027
ORF1ab/nsp16213G213SGgcAgc11AY.1020.000027
ORF1ab/nsp16213G213VgGcgTc11AY.1030.000006
ORF1ab/nsp16213G213SGgcAgc11AY.1030.000006
ORF1ab/nsp16213G213GggCggT11AY.1060.000335
ORF1ab/nsp16213G213delGGC---11AY.1070.000466
ORF1ab/nsp16213G213delGGC---11AY.1080.001103
ORF1ab/nsp16213G213NGGcAAc11AY.1100.000113
ORF1ab/nsp16213G213NGGcAAc11AY.1110.000183
ORF1ab/nsp16213G213DgGcgAc11AY.1110.000183
ORF1ab/nsp16213G213DgGcgAc11AY.1140.000231
ORF1ab/nsp16213G213GggCggT11AY.1140.000231
ORF1ab/nsp16213G213DgGcgAc11AY.116.10.000311
ORF1ab/nsp16213G213DgGcgAc11AY.1170.000085
ORF1ab/nsp16213G213VgGcgTc11AY.1170.000085
ORF1ab/nsp16213G213CGgcTgc11AY.1190.000035
ORF1ab/nsp16213G213VgGcgTc11AY.1190.000035
ORF1ab/nsp16213G213DgGcgAc11AY.1210.000135
ORF1ab/nsp16213G213NGGcAAc11AY.140.000088
ORF1ab/nsp16213G213GggCggT11AY.16.10.00047
ORF1ab/nsp16213G213DgGCgAT11AY.16.10.00047
ORF1ab/nsp16213G213CGgcTgc11AY.200.000039
ORF1ab/nsp16213G213GggCggT11AY.230.00007
ORF1ab/nsp16213G213CGgcTgc11AY.230.00007
ORF1ab/nsp16213G213DgGcgAc11AY.230.00007
ORF1ab/nsp16213G213SGgcAgc11AY.23.10.000417
ORF1ab/nsp16213G213VgGcgTc11AY.240.000431
ORF1ab/nsp16213G213DgGcgAc11AY.240.000431
ORF1ab/nsp16213G213SGgcAgc11AY.240.000431
ORF1ab/nsp16213G213VgGcgTc11AY.250.000006
ORF1ab/nsp16213G213delGGC---11AY.260.000028
ORF1ab/nsp16213G213DgGcgAc11AY.260.000028
ORF1ab/nsp16213G213DgGcgAc11AY.270.000065
ORF1ab/nsp16213G213CGgcTgc11AY.270.000065
ORF1ab/nsp16213G213DgGcgAc11AY.290.000016
ORF1ab/nsp16213G213SGgcAgc11AY.290.000016
ORF1ab/nsp16213G213SGgcAgc11AY.30.00001
ORF1ab/nsp16213G213delGGC---11AY.30.00001
ORF1ab/nsp16213G213CGgcTgc11AY.30.00001
ORF1ab/nsp16213G213DgGcgAc11AY.3.10.000085
ORF1ab/nsp16213G213NGGcAAc11AY.34.10.00051
ORF1ab/nsp16213G213GggCggA11AY.350.000233
ORF1ab/nsp16213G213SGgcAgc11AY.390.000025
ORF1ab/nsp16213G213delGGC---11AY.390.000025
ORF1ab/nsp16213G213SGgcAgc11AY.39.10.00004
ORF1ab/nsp16213G213GggCggA11AY.4.20.000022
ORF1ab/nsp16213G213NGGcAAc11AY.4.20.000022
ORF1ab/nsp16213G213DgGcgAc11AY.4.2.10.000149
ORF1ab/nsp16213G213delGGC---11AY.4.50.000107
ORF1ab/nsp16213G213VgGcgTc11AY.420.00004
ORF1ab/nsp16213G213SGgcAgc11AY.420.00004
ORF1ab/nsp16213G213GggCggT11AY.420.00004
ORF1ab/nsp16213G213YGGCTAT11AY.430.000004
ORF1ab/nsp16213G213GggCggA11AY.430.000004
ORF1ab/nsp16213G213RGgcCgc11AY.440.000006
ORF1ab/nsp16213G213delGGC---11AY.440.000006
ORF1ab/nsp16213G213VgGcgTc11AY.440.000006
ORF1ab/nsp16213G213CGgcTgc11AY.460.000104
ORF1ab/nsp16213G213NGGcAAc11AY.46.30.000934
ORF1ab/nsp16213G213delGGC---11AY.46.60.000072
ORF1ab/nsp16213G213NGGcAAc11AY.46.60.000072
ORF1ab/nsp16213G213SGgcAgc11AY.46.60.000072
ORF1ab/nsp16213G213CGgcTgc11AY.50.000021
ORF1ab/nsp16213G213SGgcAgc11AY.530.000288
ORF1ab/nsp16213G213NGGcAAc11AY.530.000288
ORF1ab/nsp16213G213delGGC---11AY.540.000095
ORF1ab/nsp16213G213delGGC---11AY.590.00053
ORF1ab/nsp16213G213SGgcAgc11AY.60.000041
ORF1ab/nsp16213G213CGgcTgc11AY.610.000105
ORF1ab/nsp16213G213NGGcAAc11AY.610.000105
ORF1ab/nsp16213G213SGgcAgc11AY.610.000105
ORF1ab/nsp16213G213delGGC---11AY.670.000464
ORF1ab/nsp16213G213delGGC---11AY.680.000274
ORF1ab/nsp16213G213SGgcAgc11AY.690.000187
ORF1ab/nsp16213G213CGgcTgc11AY.710.000475
ORF1ab/nsp16213G213GggCggT11AY.710.000475
ORF1ab/nsp16213G213NGGcAAc11AY.710.000475
ORF1ab/nsp16213G213DgGcgAc11AY.740.000116
ORF1ab/nsp16213G213CGgcTgc11AY.750.000056
ORF1ab/nsp16213G213GggCggT11AY.75.10.00018
ORF1ab/nsp16213G213GggCggT11AY.790.001211
ORF1ab/nsp16213G213NGGcAAc11AY.840.000437
ORF1ab/nsp16213G213DgGcgAc11AY.840.000437
ORF1ab/nsp16213G213SGgcAgc11AY.850.000427
ORF1ab/nsp16213G213CGgcTgc11AY.860.00083
ORF1ab/nsp16213G213GggCggT11AY.90.000068
ORF1ab/nsp16213G213DgGcgAc11AY.9.10.000084
ORF1ab/nsp16213G213GggCggT11AY.9.20.000037
ORF1ab/nsp16213G213delGGC---11AY.9.20.000037
ORF1ab/nsp16213G213VgGcgTc11AY.910.00073
ORF1ab/nsp16213G213delGGC---11AY.950.000761
ORF1ab/nsp16213G213GggCggT11AY.980.000079
ORF1ab/nsp16213G213NGGcAAc11AY.980.000079
ORF1ab/nsp16213G213CGgcTgc11AY.98.10.000048
ORF1ab/nsp16213G213del1GgCAg-11AY.990.001049
ORF1ab/nsp16213G213NGGcAAc11AY.990.001049
ORF1ab/nsp16213G213NGGcAAc11AZ.10.000867
ORF1ab/nsp16213G213SGgcAgc11AZ.10.000867
ORF1ab/nsp16213G213DgGcgAc11AZ.10.000867
ORF1ab/nsp16213G213NGGcAAc11AZ.20.000821
ORF1ab/nsp16213G213GggCggT11B0.000128
ORF1ab/nsp16213G213CGgcTgc11B.10.000009
ORF1ab/nsp16213G213RGgcCgc11B.10.000009
ORF1ab/nsp16213G213RGgcCgc11B.1.10.000018
ORF1ab/nsp16213G213CGgcTgc11B.1.1.10.000327
ORF1ab/nsp16213G213GggCggT11B.1.1.1210.002427
ORF1ab/nsp16213G213GggCggA11B.1.1.1720.018182
ORF1ab/nsp16213G213GggCggA11B.1.1.1740.003378
ORF1ab/nsp16213G213GggCggA11B.1.1.2140.000055
ORF1ab/nsp16213G213NGGcAAc11B.1.1.2140.000055
ORF1ab/nsp16213G213NGGcAAc11B.1.1.2160.00089
ORF1ab/nsp16213G213CGgcTgc11B.1.1.2200.001859
ORF1ab/nsp16213G213GggCggA11B.1.1.2220.000204
ORF1ab/nsp16213G213SGgcAgc11B.1.1.2260.005814
ORF1ab/nsp16213G213CGgcTgc11B.1.1.2510.007937
ORF1ab/nsp16213G213CGgcTgc11B.1.1.2530.002506
ORF1ab/nsp16213G213NGGcAAc11B.1.1.2690.001353
ORF1ab/nsp16213G213GggCggG11B.1.1.2770.000759
ORF1ab/nsp16213G213DgGcgAc11B.1.1.280.000311
ORF1ab/nsp16213G213CGgcTgc11B.1.1.280.000311
ORF1ab/nsp16213G213NGGcAAc11B.1.1.2800.003086
ORF1ab/nsp16213G213delGGC---11B.1.1.3060.000438
ORF1ab/nsp16213G213CGgcTgc11B.1.1.3110.000358
ORF1ab/nsp16213G213DgGcgAc11B.1.1.3170.000412
ORF1ab/nsp16213G213NGGcAAc11B.1.1.330.000421
ORF1ab/nsp16213G213SGgcAgc11B.1.1.330.000421
ORF1ab/nsp16213G213DgGcgAc11B.1.1.330.000421
ORF1ab/nsp16213G213CGgcTgc11B.1.1.3480.000796
ORF1ab/nsp16213G213DgGcgAc11B.1.1.3660.015873
ORF1ab/nsp16213G213CGgcTgc11B.1.1.3690.000446
ORF1ab/nsp16213G213del1Ggc-gc11B.1.1.4110.014706
ORF1ab/nsp16213G213GggCggT11B.1.1.4340.000349
ORF1ab/nsp16213G213CGgcTgc11B.1.1.4340.000349
ORF1ab/nsp16213G213delGGC---11B.1.1.5190.00004
ORF1ab/nsp16213G213RGgcCgc11B.1.1.5190.00004
ORF1ab/nsp16213G213CGgcTgc11B.1.1.5190.00004
ORF1ab/nsp16213G213PGGcCCc11B.1.1.70.000001
ORF1ab/nsp16213G213del1Ggc-gc11B.1.1.70.000001
ORF1ab/nsp16213G213GggCggT11B.1.130.002375
ORF1ab/nsp16213G213GggCggT11B.1.1600.000031
ORF1ab/nsp16213G213CGgcTgc11B.1.177.160.000664
ORF1ab/nsp16213G213CGgcTgc11B.1.177.200.001517
ORF1ab/nsp16213G213SGgcAgc11B.1.177.200.001517
ORF1ab/nsp16213G213CGgcTgc11B.1.177.310.011494
ORF1ab/nsp16213G213DgGcgAc11B.1.177.350.000691
ORF1ab/nsp16213G213NGGcAAc11B.1.177.430.001477
ORF1ab/nsp16213G213NGGcAAc11B.1.177.50.001242
ORF1ab/nsp16213G213delGGC---11B.1.177.500.004695
ORF1ab/nsp16213G213delGGC---11B.1.177.600.000218
ORF1ab/nsp16213G213delGGC---11B.1.177.680.015152
ORF1ab/nsp16213G213DgGcgAc11B.1.177.70.000165
ORF1ab/nsp16213G213NGGcAAc11B.1.177.70.000165
ORF1ab/nsp16213G213SGgcAgc11B.1.177.730.000566
ORF1ab/nsp16213G213CGgcTgc11B.1.177.750.001041
ORF1ab/nsp16213G213GggCggT11B.1.177.820.000477
ORF1ab/nsp16213G213DgGcgAc11B.1.177.830.001481
ORF1ab/nsp16213G213SGgcAgc11B.1.177.830.001481
ORF1ab/nsp16213G213DgGcgAc11B.1.177.860.000183
ORF1ab/nsp16213G213delGGC---11B.1.1790.003759
ORF1ab/nsp16213G213CGgcTgc11B.1.1820.007246
ORF1ab/nsp16213G213VgGcgTc11B.1.20.000009
ORF1ab/nsp16213G213NGGcAAc11B.1.214.20.0006
ORF1ab/nsp16213G213delGGC---11B.1.2180.005155
ORF1ab/nsp16213G213VgGcgTc11B.1.2210.000071
ORF1ab/nsp16213G213NGGcAAc11B.1.2210.000071
ORF1ab/nsp16213G213GggCggT11B.1.2210.000071
ORF1ab/nsp16213G213NGGcAAc11B.1.2340.000132
ORF1ab/nsp16213G213AgGcgCc11B.1.2420.018868
ORF1ab/nsp16213G213SGgcAgc11B.1.2430.00007
ORF1ab/nsp16213G213NGGcAAc11B.1.2430.00007
ORF1ab/nsp16213G213GggCggT11B.1.2580.000067
ORF1ab/nsp16213G213SGgcAgc11B.1.2580.000067
ORF1ab/nsp16213G213NGGcAAc11B.1.258.170.000104
ORF1ab/nsp16213G213SGgcAgc11B.1.258.30.001675
ORF1ab/nsp16213G213CGgcTgc11B.1.3510.00003
ORF1ab/nsp16213G213CGgcTgc11B.1.351.30.000876
ORF1ab/nsp16213G213VgGcgTc11B.1.36.160.001425
ORF1ab/nsp16213G213GggCggA11B.1.36.310.001751
ORF1ab/nsp16213G213DgGcgAc11B.1.3670.000792
ORF1ab/nsp16213G213SGgcAgc11B.1.3690.000285
ORF1ab/nsp16213G213DgGcgAc11B.1.3690.000285
ORF1ab/nsp16213G213SGgcAgc11B.1.3710.001122
ORF1ab/nsp16213G213DgGcgAc11B.1.3990.001934
ORF1ab/nsp16213G213delGGC---11B.1.416.10.001563
ORF1ab/nsp16213G213VgGcgTc11B.1.4270.00005
ORF1ab/nsp16213G213YGGcTAc11B.1.4270.00005
ORF1ab/nsp16213G213DgGcgAc11B.1.4270.00005
ORF1ab/nsp16213G213delGGC---11B.1.4290.000024
ORF1ab/nsp16213G213SGgcAgc11B.1.4290.000024
ORF1ab/nsp16213G213CGgcTgc11B.1.438.10.000107
ORF1ab/nsp16213G213DgGcgAc11B.1.4690.00361
ORF1ab/nsp16213G213GggCggT11B.1.4970.000315
ORF1ab/nsp16213G213delGGC---11B.1.4970.000315
ORF1ab/nsp16213G213RGgcCgc11B.1.4970.000315
ORF1ab/nsp16213G213GggCggA11B.1.5250.000113
ORF1ab/nsp16213G213SGgcAgc11B.1.5750.000303
ORF1ab/nsp16213G213CGgcTgc11B.1.5820.000491
ORF1ab/nsp16213G213del1ggCgg-11B.1.5820.000491
ORF1ab/nsp16213G213NGGcAAc11B.1.5880.00091
ORF1ab/nsp16213G213DgGcgAc11B.1.5950.000261
ORF1ab/nsp16213G213NGGcAAc11B.1.5960.000087
ORF1ab/nsp16213G213VgGcgTc11B.1.5960.000087
ORF1ab/nsp16213G213SGgcAgc11B.1.5960.000087
ORF1ab/nsp16213G213CGgcTgc11B.1.6090.000479
ORF1ab/nsp16213G213delGGC---11B.1.6200.000946
ORF1ab/nsp16213G213delGGC---11B.1.6210.000089
ORF1ab/nsp16213G213NGGcAAc11B.1.6230.000536
ORF1ab/nsp16213G213NGGcAAc11B.1.6280.000352
ORF1ab/nsp16213G213SGgcAgc11B.1.6370.000073
ORF1ab/nsp16213G213NGGcAAc11B.1.6370.000073
ORF1ab/nsp16213G213GggCggA11B.1.6370.000073
ORF1ab/nsp16213G213DgGcgAc11B.1.6370.000073
ORF1ab/nsp16213G213VgGcgTc11B.1.670.043478
ORF1ab/nsp16213G213SGgcAgc11B.30.000831
ORF1ab/nsp16213G213DgGcgAc11B.30.000831
ORF1ab/nsp16213G213NGGcAAc11B.30.000831
ORF1ab/nsp16213G213SGgcAgc11B.3.10.001658
ORF1ab/nsp16213G213NGGcAAc11B.400.000364
ORF1ab/nsp16213G213SGgcAgc11B.550.00295
ORF1ab/nsp16213G213NGGcAAc11B.580.010204
ORF1ab/nsp16213G213DgGcgAc11B.6.60.000889
ORF1ab/nsp16213G213delGGC---11B.610.005747
ORF1ab/nsp16213G213NGGcAAc11C.160.00106
ORF1ab/nsp16213G213GggCggG11C.230.005814
ORF1ab/nsp16213G213CGgcTgc11D.20.000075
ORF1ab/nsp16213G213NGGcAAc11N.40.004255
ORF1ab/nsp16213G213NGGcAAc11N.90.005952
ORF1ab/nsp16213G213del1GGC-NN11P.10.000016
ORF1ab/nsp16213G213NGGcAAc11P.1.10.000318
ORF1ab/nsp16213G213GggCggA11P.1.100.000269
ORF1ab/nsp16213G213DgGcgAc11P.1.100.000269
ORF1ab/nsp16213G213NGGcAAc11P.1.150.000232
ORF1ab/nsp16213G213GggCggT11P.1.150.000232
ORF1ab/nsp16213G213NGGcAAc11P.1.160.000374
ORF1ab/nsp16213G213NGGcAAc11P.1.170.000162
ORF1ab/nsp16213G213GggCggT11P.20.000187
ORF1ab/nsp16213G213CGgcTgc11Q.10.000126
ORF1ab/nsp16213G213GggCggT11Q.10.000126
ORF1ab/nsp16213G213CGgcTgc11Q.80.000165
ORF1ab/nsp16213G213DgGcgAc11R.10.00009
ORF1ab/nsp16213G213CGgcTgc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.