CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 211 & Codon = taC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16211Y211YY7009YsyntaTtaC17861786121289-21291

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16211Y211YtaTtaC17861786All0.000342
ORF1ab/nsp16211Y211YtaTtaC886886B.1.177.600.193534
ORF1ab/nsp16211Y211YtaTtaC256256AY.1030.00159
ORF1ab/nsp16211Y211YtaTtaC105105B.1.1.70.000094
ORF1ab/nsp16211Y211YtaTtaC102102U.20.894737
ORF1ab/nsp16211Y211YtaTtaC7474U.10.948718
ORF1ab/nsp16211Y211YtaTtaC6161B.1.177.790.142857
ORF1ab/nsp16211Y211YtaTtaC5757B.1.617.20.000215
ORF1ab/nsp16211Y211YtaTtaC3535B.10.000321
ORF1ab/nsp16211Y211YtaTtaC3232AY.4.50.00344
ORF1ab/nsp16211Y211YtaTtaC2020AY.40.000031
ORF1ab/nsp16211Y211YtaTtaC88AY.470.000249
ORF1ab/nsp16211Y211YtaTtaC88B.1.5960.000697
ORF1ab/nsp16211Y211YtaTtaC77AY.980.000553
ORF1ab/nsp16211Y211YtaTtaC77AY.98.10.000339
ORF1ab/nsp16211Y211YtaTtaC77B.1.3490.005004
ORF1ab/nsp16211Y211YtaTtaC66AY.440.000037
ORF1ab/nsp16211Y211YtaTtaC66AY.60.000247
ORF1ab/nsp16211Y211YtaTtaC66AY.750.000336
ORF1ab/nsp16211Y211YtaTtaC66B.1.1770.000079
ORF1ab/nsp16211Y211YtaTtaC66C.370.000696
ORF1ab/nsp16211Y211YtaTtaC55B.1.1.2650.015773
ORF1ab/nsp16211Y211YtaTtaC44AY.250.000024
ORF1ab/nsp16211Y211YtaTtaC44B.1.360.000584
ORF1ab/nsp16211Y211YtaTtaC44P.1.170.000647
ORF1ab/nsp16211Y211YtaTtaC44P.1.20.004624
ORF1ab/nsp16211Y211YtaTtaC44Q.80.00066
ORF1ab/nsp16211Y211YtaTtaC33AY.260.000085
ORF1ab/nsp16211Y211YtaTtaC33B.1.1.390.001529
ORF1ab/nsp16211Y211YtaTtaC33B.1.20.000026
ORF1ab/nsp16211Y211YtaTtaC33B.1.258.140.002941
ORF1ab/nsp16211Y211YtaTtaC33B.1.3510.000089
ORF1ab/nsp16211Y211YtaTtaC33B.1.5610.001191
ORF1ab/nsp16211Y211YtaTtaC33P.1.70.000958
ORF1ab/nsp16211Y211YtaTtaC22AY.1130.000285
ORF1ab/nsp16211Y211YtaTtaC22AY.20.000712
ORF1ab/nsp16211Y211YtaTtaC22B.1.2100.004264
ORF1ab/nsp16211Y211YtaTtaC22B.1.2430.000139
ORF1ab/nsp16211Y211YtaTtaC22B.1.466.20.000782
ORF1ab/nsp16211Y211YtaTtaC22B.1.5680.002222
ORF1ab/nsp16211Y211YtaTtaC11AY.100.00053
ORF1ab/nsp16211Y211YtaTtaC11AY.1000.000046
ORF1ab/nsp16211Y211YtaTtaC11AY.1190.000035
ORF1ab/nsp16211Y211YtaTtaC11AY.1200.000037
ORF1ab/nsp16211Y211YtaTtaC11AY.230.00007
ORF1ab/nsp16211Y211YtaTtaC11AY.270.000065
ORF1ab/nsp16211Y211YtaTtaC11AY.290.000016
ORF1ab/nsp16211Y211YtaTtaC11AY.330.000067
ORF1ab/nsp16211Y211YtaTtaC11AY.50.000021
ORF1ab/nsp16211Y211YtaTtaC11AY.610.000105
ORF1ab/nsp16211Y211YtaTtaC11B.1.10.000018
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.280.000311
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.3030.002762
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.3120.001912
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.3490.010309
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.3690.000446
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.40.002976
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.4160.000905
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.5190.00004
ORF1ab/nsp16211Y211YtaTtaC11B.1.177.120.000152
ORF1ab/nsp16211Y211YtaTtaC11B.1.2060.000816
ORF1ab/nsp16211Y211YtaTtaC11B.1.36.380.001642
ORF1ab/nsp16211Y211YtaTtaC11B.1.3670.000792
ORF1ab/nsp16211Y211YtaTtaC11B.1.4290.000024
ORF1ab/nsp16211Y211YtaTtaC11B.1.4480.002625
ORF1ab/nsp16211Y211YtaTtaC11B.1.5240.001406
ORF1ab/nsp16211Y211YtaTtaC11B.1.5260.000024
ORF1ab/nsp16211Y211YtaTtaC11B.1.5760.000907
ORF1ab/nsp16211Y211YtaTtaC11B.1.5800.004065
ORF1ab/nsp16211Y211YtaTtaC11B.1.6210.000089
ORF1ab/nsp16211Y211YtaTtaC11C.30.10.006711
ORF1ab/nsp16211Y211YtaTtaC11D.20.000075
ORF1ab/nsp16211Y211YtaTtaC11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.