CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 211

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16211Y211YY7009YsyntaTtaC17861786121289-21291
ORF1ab/nsp16211Y211HY7009HnonsynTatCat1591580.99371121289-21291
ORF1ab/nsp16211Y211HY7009HnonsynTaTCaC15910.0062893121289-21291
ORF1ab/nsp16211Y211delY7009deldelTAT---144144121289-21291
ORF1ab/nsp16211Y211CY7009CnonsyntAttGt1818121289-21291
ORF1ab/nsp16211Y211NY7009NnonsynTatAat1111121289-21291
ORF1ab/nsp16211Y211FY7009FnonsyntAttTt88121289-21291
ORF1ab/nsp16211Y211SY7009SnonsyntAttCt66121289-21291
ORF1ab/nsp16211Y211GY7009GnonsynTAtGGt33121289-21291
ORF1ab/nsp16211Y211del1Y7009del1delTat-at320.66666721289-21291
ORF1ab/nsp16211Y211del1Y7009del1deltATtG-310.33333321289-21291
ORF1ab/nsp16211Y211XY7009XnonsyntaTtaA210.521289-21291
ORF1ab/nsp16211Y211XY7009XnonsyntaTtaG210.521289-21291
ORF1ab/nsp16211Y211IY7009InonsynTAtATt210.521289-21291
ORF1ab/nsp16211Y211LY7009LnonsynTAtCTt210.521289-21291
ORF1ab/nsp16211Y211LY7009LnonsynTATCTC210.521289-21291
ORF1ab/nsp16211Y211IY7009InonsynTATATC210.521289-21291
ORF1ab/nsp16211Y211DY7009DnonsynTatGat11121289-21291

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16211Y211YtaTtaC17861786All0.000342
ORF1ab/nsp16211Y211YtaTtaC886886B.1.177.600.193534
ORF1ab/nsp16211Y211YtaTtaC256256AY.1030.00159
ORF1ab/nsp16211Y211HTatCat158159All0.00003
ORF1ab/nsp16211Y211HTaTCaC1159All0
ORF1ab/nsp16211Y211delTAT---144144All0.000028
ORF1ab/nsp16211Y211YtaTtaC105105B.1.1.70.000094
ORF1ab/nsp16211Y211YtaTtaC102102U.20.894737
ORF1ab/nsp16211Y211YtaTtaC7474U.10.948718
ORF1ab/nsp16211Y211YtaTtaC6161B.1.177.790.142857
ORF1ab/nsp16211Y211YtaTtaC5757B.1.617.20.000215
ORF1ab/nsp16211Y211HTatCat5353B.1.3510.001576
ORF1ab/nsp16211Y211YtaTtaC3535B.10.000321
ORF1ab/nsp16211Y211YtaTtaC3232AY.4.50.00344
ORF1ab/nsp16211Y211HTatCat2323B.1.1.70.000021
ORF1ab/nsp16211Y211YtaTtaC2020AY.40.000031
ORF1ab/nsp16211Y211delTAT---2020B.1.20.000176
ORF1ab/nsp16211Y211CtAttGt1818All0.000003
ORF1ab/nsp16211Y211HTatCat1617AY.40.000025
ORF1ab/nsp16211Y211HTaTCaC117AY.40.000002
ORF1ab/nsp16211Y211delTAT---1313B.1.1.70.000012
ORF1ab/nsp16211Y211NTatAat1111All0.000002
ORF1ab/nsp16211Y211delTAT---1111AY.430.000049
ORF1ab/nsp16211Y211HTatCat1111AY.440.000067
ORF1ab/nsp16211Y211delTAT---1111B.10.000101
ORF1ab/nsp16211Y211HTatCat99B.10.000082
ORF1ab/nsp16211Y211FtAttTt88All0.000002
ORF1ab/nsp16211Y211YtaTtaC88AY.470.000249
ORF1ab/nsp16211Y211YtaTtaC88B.1.5960.000697
ORF1ab/nsp16211Y211HTatCat88B.1.617.20.00003
ORF1ab/nsp16211Y211delTAT---88P.10.000126
ORF1ab/nsp16211Y211HTatCat77AY.290.00011
ORF1ab/nsp16211Y211YtaTtaC77AY.980.000553
ORF1ab/nsp16211Y211YtaTtaC77AY.98.10.000339
ORF1ab/nsp16211Y211YtaTtaC77B.1.3490.005004
ORF1ab/nsp16211Y211delTAT---77B.1.617.20.000026
ORF1ab/nsp16211Y211StAttCt66All0.000001
ORF1ab/nsp16211Y211NTatAat66AY.120.10.001926
ORF1ab/nsp16211Y211YtaTtaC66AY.440.000037
ORF1ab/nsp16211Y211HTatCat66AY.470.000187
ORF1ab/nsp16211Y211YtaTtaC66AY.60.000247
ORF1ab/nsp16211Y211YtaTtaC66AY.750.000336
ORF1ab/nsp16211Y211YtaTtaC66B.1.1770.000079
ORF1ab/nsp16211Y211YtaTtaC66C.370.000696
ORF1ab/nsp16211Y211CtAttGt55AY.40.000008
ORF1ab/nsp16211Y211YtaTtaC55B.1.1.2650.015773
ORF1ab/nsp16211Y211YtaTtaC44AY.250.000024
ORF1ab/nsp16211Y211HTatCat44B.1.160.270.060606
ORF1ab/nsp16211Y211YtaTtaC44B.1.360.000584
ORF1ab/nsp16211Y211delTAT---44B.1.5250.000453
ORF1ab/nsp16211Y211YtaTtaC44P.1.170.000647
ORF1ab/nsp16211Y211YtaTtaC44P.1.20.004624
ORF1ab/nsp16211Y211YtaTtaC44Q.80.00066
ORF1ab/nsp16211Y211GTAtGGt33All0.000001
ORF1ab/nsp16211Y211del1Tat-at23All0
ORF1ab/nsp16211Y211del1tATtG-13All0
ORF1ab/nsp16211Y211HTatCat33AY.1030.000019
ORF1ab/nsp16211Y211delTAT---33AY.250.000018
ORF1ab/nsp16211Y211YtaTtaC33AY.260.000085
ORF1ab/nsp16211Y211delTAT---33AY.40.000005
ORF1ab/nsp16211Y211delTAT---33B.1.10.000054
ORF1ab/nsp16211Y211YtaTtaC33B.1.1.390.001529
ORF1ab/nsp16211Y211HTatCat33B.1.1770.00004
ORF1ab/nsp16211Y211YtaTtaC33B.1.20.000026
ORF1ab/nsp16211Y211YtaTtaC33B.1.258.140.002941
ORF1ab/nsp16211Y211YtaTtaC33B.1.3510.000089
ORF1ab/nsp16211Y211delTAT---33B.1.5260.000071
ORF1ab/nsp16211Y211YtaTtaC33B.1.5610.001191
ORF1ab/nsp16211Y211delTAT---33B.1.5960.000261
ORF1ab/nsp16211Y211delTAT---33P.1.150.000697
ORF1ab/nsp16211Y211YtaTtaC33P.1.70.000958
ORF1ab/nsp16211Y211delTAT---220.111111
ORF1ab/nsp16211Y211XtaTtaG12All0
ORF1ab/nsp16211Y211XtaTtaA12All0
ORF1ab/nsp16211Y211LTATCTC12All0
ORF1ab/nsp16211Y211LTAtCTt12All0
ORF1ab/nsp16211Y211ITATATC12All0
ORF1ab/nsp16211Y211ITAtATt12All0
ORF1ab/nsp16211Y211delTAT---22AY.1100.000225
ORF1ab/nsp16211Y211YtaTtaC22AY.1130.000285
ORF1ab/nsp16211Y211YtaTtaC22AY.20.000712
ORF1ab/nsp16211Y211CtAttGt22AY.250.000012
ORF1ab/nsp16211Y211delTAT---22AY.330.000134
ORF1ab/nsp16211Y211FtAttTt22AY.4.2.10.000298
ORF1ab/nsp16211Y211HTatCat22AY.430.000009
ORF1ab/nsp16211Y211LTAtCTt12AY.430.000004
ORF1ab/nsp16211Y211LTATCTC12AY.430.000004
ORF1ab/nsp16211Y211CtAttGt22AY.46.60.000144
ORF1ab/nsp16211Y211NTatAat22B.1.10.000036
ORF1ab/nsp16211Y211CtAttGt22B.1.1.70.000002
ORF1ab/nsp16211Y211delTAT---22B.1.1770.000026
ORF1ab/nsp16211Y211YtaTtaC22B.1.2100.004264
ORF1ab/nsp16211Y211YtaTtaC22B.1.2430.000139
ORF1ab/nsp16211Y211delTAT---22B.1.2580.000133
ORF1ab/nsp16211Y211delTAT---22B.1.3510.000059
ORF1ab/nsp16211Y211HTatCat22B.1.4270.000101
ORF1ab/nsp16211Y211YtaTtaC22B.1.466.20.000782
ORF1ab/nsp16211Y211YtaTtaC22B.1.5680.002222
ORF1ab/nsp16211Y211delTAT---22B.1.617.10.000258
ORF1ab/nsp16211Y211delTAT---22C.370.000232
ORF1ab/nsp16211Y211delTAT---22P.1.70.000639
ORF1ab/nsp16211Y211delTAT---11A.2.40.003367
ORF1ab/nsp16211Y211DTatGat11All0
ORF1ab/nsp16211Y211delTAT---11AV.10.005051
ORF1ab/nsp16211Y211YtaTtaC11AY.100.00053
ORF1ab/nsp16211Y211YtaTtaC11AY.1000.000046
ORF1ab/nsp16211Y211delTAT---11AY.1000.000046
ORF1ab/nsp16211Y211delTAT---11AY.1020.000027
ORF1ab/nsp16211Y211delTAT---11AY.1070.000466
ORF1ab/nsp16211Y211delTAT---11AY.1080.001103
ORF1ab/nsp16211Y211YtaTtaC11AY.1190.000035
ORF1ab/nsp16211Y211YtaTtaC11AY.1200.000037
ORF1ab/nsp16211Y211HTatCat11AY.1200.000037
ORF1ab/nsp16211Y211del1tATtG-11AY.120.10.000321
ORF1ab/nsp16211Y211delTAT---11AY.190.00114
ORF1ab/nsp16211Y211YtaTtaC11AY.230.00007
ORF1ab/nsp16211Y211CtAttGt11AY.23.10.000417
ORF1ab/nsp16211Y211StAttCt11AY.250.000006
ORF1ab/nsp16211Y211YtaTtaC11AY.270.000065
ORF1ab/nsp16211Y211YtaTtaC11AY.290.000016
ORF1ab/nsp16211Y211delTAT---11AY.30.00001
ORF1ab/nsp16211Y211HTatCat11AY.30.00001
ORF1ab/nsp16211Y211YtaTtaC11AY.330.000067
ORF1ab/nsp16211Y211delTAT---11AY.390.000025
ORF1ab/nsp16211Y211StAttCt11AY.40.000002
ORF1ab/nsp16211Y211delTAT---11AY.4.50.000107
ORF1ab/nsp16211Y211ITAtATt11AY.440.000006
ORF1ab/nsp16211Y211NTatAat11AY.440.000006
ORF1ab/nsp16211Y211delTAT---11AY.440.000006
ORF1ab/nsp16211Y211delTAT---11AY.46.60.000072
ORF1ab/nsp16211Y211CtAttGt11AY.470.000031
ORF1ab/nsp16211Y211YtaTtaC11AY.50.000021
ORF1ab/nsp16211Y211delTAT---11AY.540.000095
ORF1ab/nsp16211Y211HTatCat11AY.540.000095
ORF1ab/nsp16211Y211delTAT---11AY.590.00053
ORF1ab/nsp16211Y211YtaTtaC11AY.610.000105
ORF1ab/nsp16211Y211delTAT---11AY.670.000464
ORF1ab/nsp16211Y211delTAT---11AY.680.000274
ORF1ab/nsp16211Y211HTatCat11AY.860.00083
ORF1ab/nsp16211Y211delTAT---11AY.9.20.000037
ORF1ab/nsp16211Y211delTAT---11AY.950.000761
ORF1ab/nsp16211Y211CtAttGt11AY.990.001049
ORF1ab/nsp16211Y211FtAttTt11B.10.000009
ORF1ab/nsp16211Y211DTatGat11B.10.000009
ORF1ab/nsp16211Y211CtAttGt11B.10.000009
ORF1ab/nsp16211Y211GTAtGGt11B.10.000009
ORF1ab/nsp16211Y211HTatCat11B.1.10.000018
ORF1ab/nsp16211Y211YtaTtaC11B.1.10.000018
ORF1ab/nsp16211Y211HTatCat11B.1.1.1440.028571
ORF1ab/nsp16211Y211delTAT---11B.1.1.1740.003378
ORF1ab/nsp16211Y211FtAttTt11B.1.1.2200.001859
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.280.000311
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.3030.002762
ORF1ab/nsp16211Y211delTAT---11B.1.1.3060.000438
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.3120.001912
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.3490.010309
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.3690.000446
ORF1ab/nsp16211Y211XtaTtaG11B.1.1.3720.000689
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.40.002976
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.4160.000905
ORF1ab/nsp16211Y211delTAT---11B.1.1.5190.00004
ORF1ab/nsp16211Y211YtaTtaC11B.1.1.5190.00004
ORF1ab/nsp16211Y211FtAttTt11B.1.1.70.000001
ORF1ab/nsp16211Y211del1Tat-at11B.1.1.70.000001
ORF1ab/nsp16211Y211StAttCt11B.1.1.70.000001
ORF1ab/nsp16211Y211StAttCt11B.1.1.700.000341
ORF1ab/nsp16211Y211delTAT---11B.1.110.30.000718
ORF1ab/nsp16211Y211YtaTtaC11B.1.177.120.000152
ORF1ab/nsp16211Y211delTAT---11B.1.177.500.004695
ORF1ab/nsp16211Y211HTatCat11B.1.177.560.000668
ORF1ab/nsp16211Y211HTatCat11B.1.177.570.000281
ORF1ab/nsp16211Y211delTAT---11B.1.177.600.000218
ORF1ab/nsp16211Y211delTAT---11B.1.177.680.015152
ORF1ab/nsp16211Y211delTAT---11B.1.1790.003759
ORF1ab/nsp16211Y211YtaTtaC11B.1.2060.000816
ORF1ab/nsp16211Y211delTAT---11B.1.2180.005155
ORF1ab/nsp16211Y211StAttCt11B.1.2210.000071
ORF1ab/nsp16211Y211GTAtGGt11B.1.2420.018868
ORF1ab/nsp16211Y211CtAttGt11B.1.3240.001605
ORF1ab/nsp16211Y211StAttCt11B.1.3510.00003
ORF1ab/nsp16211Y211FtAttTt11B.1.3510.00003
ORF1ab/nsp16211Y211CtAttGt11B.1.351.30.000876
ORF1ab/nsp16211Y211GTAtGGt11B.1.360.000146
ORF1ab/nsp16211Y211CtAttGt11B.1.360.000146
ORF1ab/nsp16211Y211YtaTtaC11B.1.36.380.001642
ORF1ab/nsp16211Y211YtaTtaC11B.1.3670.000792
ORF1ab/nsp16211Y211delTAT---11B.1.416.10.001563
ORF1ab/nsp16211Y211YtaTtaC11B.1.4290.000024
ORF1ab/nsp16211Y211delTAT---11B.1.4290.000024
ORF1ab/nsp16211Y211HTatCat11B.1.4290.000024
ORF1ab/nsp16211Y211YtaTtaC11B.1.4480.002625
ORF1ab/nsp16211Y211FtAttTt11B.1.4530.003236
ORF1ab/nsp16211Y211YtaTtaC11B.1.5240.001406
ORF1ab/nsp16211Y211YtaTtaC11B.1.5260.000024
ORF1ab/nsp16211Y211HTatCat11B.1.5260.000024
ORF1ab/nsp16211Y211delTAT---11B.1.5510.00129
ORF1ab/nsp16211Y211YtaTtaC11B.1.5760.000907
ORF1ab/nsp16211Y211YtaTtaC11B.1.5800.004065
ORF1ab/nsp16211Y211ITATATC11B.1.617.10.000129
ORF1ab/nsp16211Y211NTatAat11B.1.617.20.000004
ORF1ab/nsp16211Y211FtAttTt11B.1.617.20.000004
ORF1ab/nsp16211Y211delTAT---11B.1.6200.000946
ORF1ab/nsp16211Y211delTAT---11B.1.6210.000089
ORF1ab/nsp16211Y211YtaTtaC11B.1.6210.000089
ORF1ab/nsp16211Y211XtaTtaA11B.60.00091
ORF1ab/nsp16211Y211NTatAat11B.60.00091
ORF1ab/nsp16211Y211delTAT---11B.610.005747
ORF1ab/nsp16211Y211YtaTtaC11C.30.10.006711
ORF1ab/nsp16211Y211del1Tat-at11C.360.000911
ORF1ab/nsp16211Y211YtaTtaC11D.20.000075
ORF1ab/nsp16211Y211HTatCat11L.40.05
ORF1ab/nsp16211Y211delTAT---11P.1.120.000484
ORF1ab/nsp16211Y211YtaTtaC11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.