CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 199 | A199A | A6997A | syn | gcG | gcT | 186699 | 12225 | 0.0654797 | 21253-21255 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 12225 | 186699 | All | 0.002338 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 11 | 71000 | B.1.177 | 0.000145 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 12719 | B.1.177.21 | 0.000076 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4338 | 4339 | AY.70 | 0.904504 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1811 | 3146 | B.1.1.7 | 0.001621 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 578 | 1988 | B.1.617.2 | 0.002176 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 79 | 1433 | B.1.177.56 | 0.052737 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 703 | 1245 | AY.4 | 0.001094 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1242 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 72 | 786 | AY.102 | 0.001909 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 73 | 776 | B.1 | 0.000669 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 214 | 391 | AY.43 | 0.000948 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 313 | 385 | AY.3 | 0.003113 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 357 | 357 | B.1.36.37 | 0.991667 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 239 | 332 | B.1.2 | 0.002104 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 85 | 312 | AY.44 | 0.000517 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 127 | 304 | AY.25 | 0.000764 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 206 | 299 | AY.103 | 0.001279 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 284 | 294 | B.1.621 | 0.025139 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 287 | AY.68 | 0.000547 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 229 | 231 | AY.29.1 | 0.050496 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 67 | 223 | B.1.1 | 0.001215 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 180 | 180 | A.29 | 0.957447 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 177 | 177 | B.1.630 | 0.926702 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 28 | 163 | AY.9.2 | 0.001028 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 150 | 150 | B.1.160.17 | 0.255102 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 55 | 129 | P.1 | 0.000866 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 8 | 121 | B.1.258 | 0.000532 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 117 | 118 | AY.99.2 | 0.010782 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 65 | 116 | AY.26 | 0.00184 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 93 | 116 | AY.29 | 0.001467 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 102 | 113 | AY.100 | 0.004693 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 101 | 101 | B.1.1.28 | 0.031435 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 29 | 91 | AY.39 | 0.000717 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 18 | 90 | B.1.160 | 0.000561 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 11 | 88 | B.1.526 | 0.000259 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 49 | 75 | AY.5 | 0.001012 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 70 | 71 | B.1.234 | 0.009236 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 5 | 67 | AY.98 | 0.000395 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 57 | 64 | AY.92 | 0.016375 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 64 | D.2 | 0.000225 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 48 | 62 | AY.13 | 0.007727 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 5 | 61 | B.1.221 | 0.000355 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 39 | 59 | AY.20 | 0.001516 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 57 | AY.5.3 | 0.000675 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 57 | B.1.427 | 0.000202 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 51 | 54 | AY.32 | 0.027157 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 46 | 51 | B.1.1.222 | 0.009384 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 8 | 51 | B.1.429 | 0.000188 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 11 | 49 | AY.42 | 0.000443 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 9 | 46 | C.37 | 0.001045 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 38 | 45 | AY.61 | 0.003982 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 42 | 45 | B.1.258.17 | 0.004367 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 5 | 42 | B | 0.000639 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 37 | 41 | AY.111 | 0.006777 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 29 | 41 | B.1.1.519 | 0.001152 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 39 | AY.117 | 0.000338 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 39 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 37 | 39 | AY.9.1 | 0.003098 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 6 | 36 | AY.46 | 0.000624 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 21 | 35 | AY.4.2 | 0.000455 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 35 | 35 | B.1.225 | 0.538462 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 35 | P.1.12 | 0.001452 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 18 | 32 | AY.33 | 0.001202 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 24 | 30 | B.1.1.37 | 0.004629 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 13 | 30 | B.1.243 | 0.000905 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 22 | 30 | B.1.351 | 0.000654 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 30 | 30 | B.1.625 | 0.070588 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 8 | 29 | AY.118 | 0.000501 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 13 | 27 | AY.23 | 0.000907 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 8 | 26 | B.1.36 | 0.001167 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 6 | 23 | AY.5.4 | 0.00166 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 16 | 23 | P.1.14 | 0.000765 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 9 | 20 | AY.98.1 | 0.000436 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 8 | 19 | AY.47 | 0.000249 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 14 | 18 | AY.113 | 0.001993 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 10 | 18 | AY.4.5 | 0.001075 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 5 | 18 | AY.54 | 0.000477 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 12 | 17 | AY.119 | 0.000424 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 5 | 16 | AY.121 | 0.000677 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 5 | 16 | AY.39.1 | 0.000198 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 16 | B.1.466.2 | 0.001174 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 13 | 15 | AY.30 | 0.005144 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 14 | 15 | B.1.1.397 | 0.031532 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 5 | 15 | B.1.36.29 | 0.002587 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 8 | 14 | AY.120 | 0.000297 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 12 | 13 | AY.14 | 0.001056 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 8 | 13 | AY.45 | 0.000973 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 10 | 13 | B.1.1.311 | 0.003582 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 12 | A.1 | 0.000282 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 12 | AY.52 | 0.000814 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 11 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 8 | 11 | AY.36 | 0.001186 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 10 | AY.19 | 0.00114 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 10 | AY.46.2 | 0.002541 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 7 | 10 | AY.46.4 | 0.001152 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 9 | 10 | AY.6 | 0.00037 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 10 | B.1.1.214 | 0.000111 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 9 | B.1.1.301 | 0.001179 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 9 | B.1.1.70 | 0.001364 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 9 | B.1.637 | 0.000292 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 8 | AY.27 | 0.000129 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 8 | AY.3.1 | 0.000085 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 8 | AY.7.1 | 0.000113 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 8 | B.1.1.306 | 0.000877 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 8 | B.1.517 | 0.001281 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 5 | 8 | Q.1 | 0.000632 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 7 | 7 | A.21 | 0.019391 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 6 | 7 | AY.116 | 0.001721 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 7 | AY.9 | 0.00027 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 7 | P.1.15 | 0.000465 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 7 | P.2 | 0.000187 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 6 | A.2.5 | 0.000998 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 6 | AY.75 | 0.000112 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 6 | AY.75.1 | 0.000541 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 6 | AY.84 | 0.000875 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 6 | B.1.36.8 | 0.003 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 6 | B.1.596 | 0.000261 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 6 | 6 | B.1.619.1 | 0.003849 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 5 | A | 0.001548 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 5 | 5 | AY.10 | 0.00265 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 5 | AY.106 | 0.00067 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 5 | B.1.1.25 | 0.001706 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 5 | B.1.1.263 | 0.006231 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 5 | B.1.237 | 0.0199 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 5 | B.1.369 | 0.000856 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 5 | 5 | B.1.577 | 0.003436 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 5 | P.1.16 | 0.001496 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 5 | P.1.7 | 0.000958 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 4 | AY.105 | 0.001286 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 4 | AY.108 | 0.002205 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 4 | AY.23.1 | 0.000835 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 4 | AY.34 | 0.000291 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 4 | AY.37 | 0.001264 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 4 | AY.62 | 0.000436 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 4 | AY.77 | 0.001127 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 4 | AY.94 | 0.001771 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 4 | B.1.1.1 | 0.00098 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 4 | B.1.1.189 | 0.003026 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 4 | B.1.1.369 | 0.001785 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 4 | B.1.1.374 | 0.009501 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 4 | B.1.1.398 | 0.012903 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 4 | B.1.1.420 | 0.001006 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 4 | B.1.351.5 | 0.002398 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 4 | 4 | B.1.568 | 0.004444 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 4 | B.40 | 0.000364 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 4 | C.36.3 | 0.000567 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 4 | P.1.2 | 0.002312 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 4 | Q.3 | 0.000145 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 4 | Q.8 | 0.00033 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 3 | A.5 | 0.005769 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 3 | AY.114 | 0.000462 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 3 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 3 | AY.16.1 | 0.00094 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 3 | AY.7 | 0.000196 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 3 | AY.71 | 0.00095 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 3 | B.1.1.487 | 0.011173 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 3 | B.1.36.16 | 0.004274 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 3 | B.1.396 | 0.000706 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 3 | B.1.468 | 0.005714 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 3 | B.1.525 | 0.000113 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 3 | B.1.530 | 0.007143 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 3 | B.1.540 | 0.009709 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 3 | B.1.561 | 0.000794 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 3 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 3 | P.1.17 | 0.000324 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | A.2.4 | 0.003367 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | AY.120.1 | 0.000321 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | AY.53 | 0.000288 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | AY.65 | 0.000533 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | AY.93 | 0.000273 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | AY.97 | 0.003401 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | B.1.1.170 | 0.001247 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | B.1.1.284 | 0.000107 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | B.1.1.297 | 0.004474 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | B.1.111 | 0.001175 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | B.1.221.3 | 0.001667 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | B.1.36.36 | 0.000602 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | B.1.459 | 0.004082 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | B.1.558 | 0.004566 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | B.1.564 | 0.000426 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | B.55 | 0.00295 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | B.6.6 | 0.000889 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 2 | C.36 | 0.000911 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.122 | 0.045455 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.410 | 0.037037 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | Q.6 | 0.006623 |
ORF1ab/nsp16 | 199 | A199A | gcG | gcT | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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