CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 199 & Codon = gcT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16199A199AA6997AsyngcGgcT186699122250.065479721253-21255

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16199A199AgcGgcT12225186699All0.002338
ORF1ab/nsp16199A199AgcGgcT1171000B.1.1770.000145
ORF1ab/nsp16199A199AgcGgcT112719B.1.177.210.000076
ORF1ab/nsp16199A199AgcGgcT43384339AY.700.904504
ORF1ab/nsp16199A199AgcGgcT18113146B.1.1.70.001621
ORF1ab/nsp16199A199AgcGgcT5781988B.1.617.20.002176
ORF1ab/nsp16199A199AgcGgcT791433B.1.177.560.052737
ORF1ab/nsp16199A199AgcGgcT7031245AY.40.001094
ORF1ab/nsp16199A199AgcGgcT11242B.1.177.730.000566
ORF1ab/nsp16199A199AgcGgcT72786AY.1020.001909
ORF1ab/nsp16199A199AgcGgcT73776B.10.000669
ORF1ab/nsp16199A199AgcGgcT214391AY.430.000948
ORF1ab/nsp16199A199AgcGgcT313385AY.30.003113
ORF1ab/nsp16199A199AgcGgcT357357B.1.36.370.991667
ORF1ab/nsp16199A199AgcGgcT239332B.1.20.002104
ORF1ab/nsp16199A199AgcGgcT85312AY.440.000517
ORF1ab/nsp16199A199AgcGgcT127304AY.250.000764
ORF1ab/nsp16199A199AgcGgcT206299AY.1030.001279
ORF1ab/nsp16199A199AgcGgcT284294B.1.6210.025139
ORF1ab/nsp16199A199AgcGgcT2287AY.680.000547
ORF1ab/nsp16199A199AgcGgcT229231AY.29.10.050496
ORF1ab/nsp16199A199AgcGgcT67223B.1.10.001215
ORF1ab/nsp16199A199AgcGgcT180180A.290.957447
ORF1ab/nsp16199A199AgcGgcT177177B.1.6300.926702
ORF1ab/nsp16199A199AgcGgcT28163AY.9.20.001028
ORF1ab/nsp16199A199AgcGgcT150150B.1.160.170.255102
ORF1ab/nsp16199A199AgcGgcT55129P.10.000866
ORF1ab/nsp16199A199AgcGgcT8121B.1.2580.000532
ORF1ab/nsp16199A199AgcGgcT117118AY.99.20.010782
ORF1ab/nsp16199A199AgcGgcT65116AY.260.00184
ORF1ab/nsp16199A199AgcGgcT93116AY.290.001467
ORF1ab/nsp16199A199AgcGgcT102113AY.1000.004693
ORF1ab/nsp16199A199AgcGgcT101101B.1.1.280.031435
ORF1ab/nsp16199A199AgcGgcT2991AY.390.000717
ORF1ab/nsp16199A199AgcGgcT1890B.1.1600.000561
ORF1ab/nsp16199A199AgcGgcT1188B.1.5260.000259
ORF1ab/nsp16199A199AgcGgcT4975AY.50.001012
ORF1ab/nsp16199A199AgcGgcT7071B.1.2340.009236
ORF1ab/nsp16199A199AgcGgcT567AY.980.000395
ORF1ab/nsp16199A199AgcGgcT5764AY.920.016375
ORF1ab/nsp16199A199AgcGgcT364D.20.000225
ORF1ab/nsp16199A199AgcGgcT4862AY.130.007727
ORF1ab/nsp16199A199AgcGgcT561B.1.2210.000355
ORF1ab/nsp16199A199AgcGgcT3959AY.200.001516
ORF1ab/nsp16199A199AgcGgcT257AY.5.30.000675
ORF1ab/nsp16199A199AgcGgcT457B.1.4270.000202
ORF1ab/nsp16199A199AgcGgcT5154AY.320.027157
ORF1ab/nsp16199A199AgcGgcT4651B.1.1.2220.009384
ORF1ab/nsp16199A199AgcGgcT851B.1.4290.000188
ORF1ab/nsp16199A199AgcGgcT1149AY.420.000443
ORF1ab/nsp16199A199AgcGgcT946C.370.001045
ORF1ab/nsp16199A199AgcGgcT3845AY.610.003982
ORF1ab/nsp16199A199AgcGgcT4245B.1.258.170.004367
ORF1ab/nsp16199A199AgcGgcT542B0.000639
ORF1ab/nsp16199A199AgcGgcT3741AY.1110.006777
ORF1ab/nsp16199A199AgcGgcT2941B.1.1.5190.001152
ORF1ab/nsp16199A199AgcGgcT439AY.1170.000338
ORF1ab/nsp16199A199AgcGgcT139AY.590.00053
ORF1ab/nsp16199A199AgcGgcT3739AY.9.10.003098
ORF1ab/nsp16199A199AgcGgcT636AY.460.000624
ORF1ab/nsp16199A199AgcGgcT2135AY.4.20.000455
ORF1ab/nsp16199A199AgcGgcT3535B.1.2250.538462
ORF1ab/nsp16199A199AgcGgcT335P.1.120.001452
ORF1ab/nsp16199A199AgcGgcT1832AY.330.001202
ORF1ab/nsp16199A199AgcGgcT2430B.1.1.370.004629
ORF1ab/nsp16199A199AgcGgcT1330B.1.2430.000905
ORF1ab/nsp16199A199AgcGgcT2230B.1.3510.000654
ORF1ab/nsp16199A199AgcGgcT3030B.1.6250.070588
ORF1ab/nsp16199A199AgcGgcT829AY.1180.000501
ORF1ab/nsp16199A199AgcGgcT1327AY.230.000907
ORF1ab/nsp16199A199AgcGgcT826B.1.360.001167
ORF1ab/nsp16199A199AgcGgcT623AY.5.40.00166
ORF1ab/nsp16199A199AgcGgcT1623P.1.140.000765
ORF1ab/nsp16199A199AgcGgcT920AY.98.10.000436
ORF1ab/nsp16199A199AgcGgcT819AY.470.000249
ORF1ab/nsp16199A199AgcGgcT1418AY.1130.001993
ORF1ab/nsp16199A199AgcGgcT1018AY.4.50.001075
ORF1ab/nsp16199A199AgcGgcT518AY.540.000477
ORF1ab/nsp16199A199AgcGgcT1217AY.1190.000424
ORF1ab/nsp16199A199AgcGgcT516AY.1210.000677
ORF1ab/nsp16199A199AgcGgcT516AY.39.10.000198
ORF1ab/nsp16199A199AgcGgcT316B.1.466.20.001174
ORF1ab/nsp16199A199AgcGgcT1315AY.300.005144
ORF1ab/nsp16199A199AgcGgcT1415B.1.1.3970.031532
ORF1ab/nsp16199A199AgcGgcT515B.1.36.290.002587
ORF1ab/nsp16199A199AgcGgcT814AY.1200.000297
ORF1ab/nsp16199A199AgcGgcT1213AY.140.001056
ORF1ab/nsp16199A199AgcGgcT813AY.450.000973
ORF1ab/nsp16199A199AgcGgcT1013B.1.1.3110.003582
ORF1ab/nsp16199A199AgcGgcT112A.10.000282
ORF1ab/nsp16199A199AgcGgcT112AY.520.000814
ORF1ab/nsp16199A199AgcGgcT111AY.1100.000113
ORF1ab/nsp16199A199AgcGgcT811AY.360.001186
ORF1ab/nsp16199A199AgcGgcT110AY.190.00114
ORF1ab/nsp16199A199AgcGgcT410AY.46.20.002541
ORF1ab/nsp16199A199AgcGgcT710AY.46.40.001152
ORF1ab/nsp16199A199AgcGgcT910AY.60.00037
ORF1ab/nsp16199A199AgcGgcT210B.1.1.2140.000111
ORF1ab/nsp16199A199AgcGgcT19B.1.1.3010.001179
ORF1ab/nsp16199A199AgcGgcT49B.1.1.700.001364
ORF1ab/nsp16199A199AgcGgcT49B.1.6370.000292
ORF1ab/nsp16199A199AgcGgcT28AY.270.000129
ORF1ab/nsp16199A199AgcGgcT18AY.3.10.000085
ORF1ab/nsp16199A199AgcGgcT18AY.7.10.000113
ORF1ab/nsp16199A199AgcGgcT28B.1.1.3060.000877
ORF1ab/nsp16199A199AgcGgcT38B.1.5170.001281
ORF1ab/nsp16199A199AgcGgcT88B.1.617.10.001032
ORF1ab/nsp16199A199AgcGgcT58Q.10.000632
ORF1ab/nsp16199A199AgcGgcT77A.210.019391
ORF1ab/nsp16199A199AgcGgcT67AY.1160.001721
ORF1ab/nsp16199A199AgcGgcT47AY.90.00027
ORF1ab/nsp16199A199AgcGgcT27P.1.150.000465
ORF1ab/nsp16199A199AgcGgcT17P.20.000187
ORF1ab/nsp16199A199AgcGgcT26A.2.50.000998
ORF1ab/nsp16199A199AgcGgcT26AY.750.000112
ORF1ab/nsp16199A199AgcGgcT36AY.75.10.000541
ORF1ab/nsp16199A199AgcGgcT26AY.840.000875
ORF1ab/nsp16199A199AgcGgcT36B.1.36.80.003
ORF1ab/nsp16199A199AgcGgcT36B.1.5960.000261
ORF1ab/nsp16199A199AgcGgcT66B.1.619.10.003849
ORF1ab/nsp16199A199AgcGgcT45A0.001548
ORF1ab/nsp16199A199AgcGgcT55AY.100.00265
ORF1ab/nsp16199A199AgcGgcT25AY.1060.00067
ORF1ab/nsp16199A199AgcGgcT55AY.240.002155
ORF1ab/nsp16199A199AgcGgcT35B.1.1.250.001706
ORF1ab/nsp16199A199AgcGgcT45B.1.1.2630.006231
ORF1ab/nsp16199A199AgcGgcT45B.1.2370.0199
ORF1ab/nsp16199A199AgcGgcT35B.1.3690.000856
ORF1ab/nsp16199A199AgcGgcT55B.1.5770.003436
ORF1ab/nsp16199A199AgcGgcT45P.1.160.001496
ORF1ab/nsp16199A199AgcGgcT35P.1.70.000958
ORF1ab/nsp16199A199AgcGgcT24AY.1050.001286
ORF1ab/nsp16199A199AgcGgcT24AY.1080.002205
ORF1ab/nsp16199A199AgcGgcT24AY.23.10.000835
ORF1ab/nsp16199A199AgcGgcT34AY.340.000291
ORF1ab/nsp16199A199AgcGgcT44AY.370.001264
ORF1ab/nsp16199A199AgcGgcT14AY.620.000436
ORF1ab/nsp16199A199AgcGgcT14AY.770.001127
ORF1ab/nsp16199A199AgcGgcT44AY.940.001771
ORF1ab/nsp16199A199AgcGgcT34B.1.1.10.00098
ORF1ab/nsp16199A199AgcGgcT24B.1.1.1890.003026
ORF1ab/nsp16199A199AgcGgcT44B.1.1.3690.001785
ORF1ab/nsp16199A199AgcGgcT44B.1.1.3740.009501
ORF1ab/nsp16199A199AgcGgcT44B.1.1.3980.012903
ORF1ab/nsp16199A199AgcGgcT14B.1.1.4200.001006
ORF1ab/nsp16199A199AgcGgcT44B.1.351.50.002398
ORF1ab/nsp16199A199AgcGgcT44B.1.5680.004444
ORF1ab/nsp16199A199AgcGgcT14B.400.000364
ORF1ab/nsp16199A199AgcGgcT14C.36.30.000567
ORF1ab/nsp16199A199AgcGgcT24P.1.20.002312
ORF1ab/nsp16199A199AgcGgcT14Q.30.000145
ORF1ab/nsp16199A199AgcGgcT24Q.80.00033
ORF1ab/nsp16199A199AgcGgcT33A.2.5.20.004717
ORF1ab/nsp16199A199AgcGgcT33A.50.005769
ORF1ab/nsp16199A199AgcGgcT23AY.1140.000462
ORF1ab/nsp16199A199AgcGgcT13AY.160.00038
ORF1ab/nsp16199A199AgcGgcT23AY.16.10.00094
ORF1ab/nsp16199A199AgcGgcT33AY.20.001068
ORF1ab/nsp16199A199AgcGgcT13AY.70.000196
ORF1ab/nsp16199A199AgcGgcT23AY.710.00095
ORF1ab/nsp16199A199AgcGgcT23B.1.1.4870.011173
ORF1ab/nsp16199A199AgcGgcT33B.1.2320.001612
ORF1ab/nsp16199A199AgcGgcT33B.1.2410.002435
ORF1ab/nsp16199A199AgcGgcT33B.1.36.160.004274
ORF1ab/nsp16199A199AgcGgcT13B.1.3960.000706
ORF1ab/nsp16199A199AgcGgcT13B.1.4680.005714
ORF1ab/nsp16199A199AgcGgcT13B.1.5250.000113
ORF1ab/nsp16199A199AgcGgcT13B.1.5300.007143
ORF1ab/nsp16199A199AgcGgcT13B.1.5400.009709
ORF1ab/nsp16199A199AgcGgcT23B.1.5610.000794
ORF1ab/nsp16199A199AgcGgcT13B.1.6090.000479
ORF1ab/nsp16199A199AgcGgcT33B.1.6280.001057
ORF1ab/nsp16199A199AgcGgcT23P.1.170.000324
ORF1ab/nsp16199A199AgcGgcT12A.2.40.003367
ORF1ab/nsp16199A199AgcGgcT12AY.120.10.000321
ORF1ab/nsp16199A199AgcGgcT22AY.350.000466
ORF1ab/nsp16199A199AgcGgcT12AY.4.2.10.000149
ORF1ab/nsp16199A199AgcGgcT12AY.530.000288
ORF1ab/nsp16199A199AgcGgcT12AY.650.000533
ORF1ab/nsp16199A199AgcGgcT22AY.670.000929
ORF1ab/nsp16199A199AgcGgcT22AY.870.001665
ORF1ab/nsp16199A199AgcGgcT12AY.930.000273
ORF1ab/nsp16199A199AgcGgcT22AY.970.003401
ORF1ab/nsp16199A199AgcGgcT12B.1.1.1700.001247
ORF1ab/nsp16199A199AgcGgcT12B.1.1.2840.000107
ORF1ab/nsp16199A199AgcGgcT22B.1.1.2970.004474
ORF1ab/nsp16199A199AgcGgcT12B.1.1.4090.002833
ORF1ab/nsp16199A199AgcGgcT22B.1.1.4160.00181
ORF1ab/nsp16199A199AgcGgcT22B.1.110.30.001437
ORF1ab/nsp16199A199AgcGgcT12B.1.1110.001175
ORF1ab/nsp16199A199AgcGgcT22B.1.221.30.001667
ORF1ab/nsp16199A199AgcGgcT22B.1.36.10.002281
ORF1ab/nsp16199A199AgcGgcT12B.1.36.360.000602
ORF1ab/nsp16199A199AgcGgcT22B.1.438.10.000215
ORF1ab/nsp16199A199AgcGgcT12B.1.4590.004082
ORF1ab/nsp16199A199AgcGgcT22B.1.5510.002581
ORF1ab/nsp16199A199AgcGgcT12B.1.5580.004566
ORF1ab/nsp16199A199AgcGgcT12B.1.5640.000426
ORF1ab/nsp16199A199AgcGgcT22B.1.5820.000981
ORF1ab/nsp16199A199AgcGgcT22B.40.004415
ORF1ab/nsp16199A199AgcGgcT12B.550.00295
ORF1ab/nsp16199A199AgcGgcT12B.6.60.000889
ORF1ab/nsp16199A199AgcGgcT22C.160.002121
ORF1ab/nsp16199A199AgcGgcT12C.360.000911
ORF1ab/nsp16199A199AgcGgcT11A.20.000662
ORF1ab/nsp16199A199AgcGgcT11A.250.018182
ORF1ab/nsp16199A199AgcGgcT11A.30.002096
ORF1ab/nsp16199A199AgcGgcT11AY.1010.00049
ORF1ab/nsp16199A199AgcGgcT11AY.1040.001984
ORF1ab/nsp16199A199AgcGgcT11AY.380.000499
ORF1ab/nsp16199A199AgcGgcT11AY.4.30.000842
ORF1ab/nsp16199A199AgcGgcT11AY.410.000294
ORF1ab/nsp16199A199AgcGgcT11AY.480.000465
ORF1ab/nsp16199A199AgcGgcT11AY.600.000938
ORF1ab/nsp16199A199AgcGgcT11AY.630.000387
ORF1ab/nsp16199A199AgcGgcT11AY.660.00107
ORF1ab/nsp16199A199AgcGgcT11AY.850.000427
ORF1ab/nsp16199A199AgcGgcT11AY.880.000884
ORF1ab/nsp16199A199AgcGgcT11B.1.1.100.001115
ORF1ab/nsp16199A199AgcGgcT11B.1.1.1010.01
ORF1ab/nsp16199A199AgcGgcT11B.1.1.1220.045455
ORF1ab/nsp16199A199AgcGgcT11B.1.1.2070.001182
ORF1ab/nsp16199A199AgcGgcT11B.1.1.2370.005405
ORF1ab/nsp16199A199AgcGgcT11B.1.1.2910.000742
ORF1ab/nsp16199A199AgcGgcT11B.1.1.2940.001266
ORF1ab/nsp16199A199AgcGgcT11B.1.1.3160.000925
ORF1ab/nsp16199A199AgcGgcT11B.1.1.3170.000412
ORF1ab/nsp16199A199AgcGgcT11B.1.1.3440.010753
ORF1ab/nsp16199A199AgcGgcT11B.1.1.3760.005952
ORF1ab/nsp16199A199AgcGgcT11B.1.1.4100.037037
ORF1ab/nsp16199A199AgcGgcT11B.1.1.4480.002033
ORF1ab/nsp16199A199AgcGgcT11B.1.1.4640.001473
ORF1ab/nsp16199A199AgcGgcT11B.1.1.5230.001563
ORF1ab/nsp16199A199AgcGgcT11B.1.1.5260.003546
ORF1ab/nsp16199A199AgcGgcT11B.1.1040.00369
ORF1ab/nsp16199A199AgcGgcT11B.1.1790.003759
ORF1ab/nsp16199A199AgcGgcT11B.1.1890.004292
ORF1ab/nsp16199A199AgcGgcT11B.1.2100.002132
ORF1ab/nsp16199A199AgcGgcT11B.1.2140.003663
ORF1ab/nsp16199A199AgcGgcT11B.1.258.30.001675
ORF1ab/nsp16199A199AgcGgcT11B.1.351.20.000303
ORF1ab/nsp16199A199AgcGgcT11B.1.36.180.00042
ORF1ab/nsp16199A199AgcGgcT11B.1.36.220.001208
ORF1ab/nsp16199A199AgcGgcT11B.1.3990.001934
ORF1ab/nsp16199A199AgcGgcT11B.1.4560.003268
ORF1ab/nsp16199A199AgcGgcT11B.1.5270.003704
ORF1ab/nsp16199A199AgcGgcT11B.1.575.10.002439
ORF1ab/nsp16199A199AgcGgcT11B.1.5880.00091
ORF1ab/nsp16199A199AgcGgcT11B.1.6100.003546
ORF1ab/nsp16199A199AgcGgcT11B.1.6330.041667
ORF1ab/nsp16199A199AgcGgcT11B.60.00091
ORF1ab/nsp16199A199AgcGgcT11C.140.004329
ORF1ab/nsp16199A199AgcGgcT11L.30.003546
ORF1ab/nsp16199A199AgcGgcT11Q.60.006623
ORF1ab/nsp16199A199AgcGgcT11Q.70.001111