CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 199

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16199A199AA6997AsyngcGgcC1866991733290.92838721253-21255
ORF1ab/nsp16199A199AA6997AsyngcGgcT186699122250.065479721253-21255
ORF1ab/nsp16199A199AA6997AsyngcGgcA18669911450.0061328721253-21255
ORF1ab/nsp16199A199VA6997VnonsyngCggTg2232210.99103121253-21255
ORF1ab/nsp16199A199VA6997VnonsyngCGgTC22320.0089686121253-21255
ORF1ab/nsp16199A199delA6997deldelGCG---169169121253-21255
ORF1ab/nsp16199A199TA6997TnonsynGcgAcg58550.94827621253-21255
ORF1ab/nsp16199A199TA6997TnonsynGcGAcC5830.051724121253-21255
ORF1ab/nsp16199A199SA6997SnonsynGcgTcg20150.7521253-21255
ORF1ab/nsp16199A199SA6997SnonsynGcGTcT2040.221253-21255
ORF1ab/nsp16199A199SA6997SnonsynGcGTcC2010.0521253-21255
ORF1ab/nsp16199A199EA6997EnonsyngCggAg88121253-21255
ORF1ab/nsp16199A199GA6997GnonsyngCggGg33121253-21255
ORF1ab/nsp16199A199PA6997PnonsynGcgCcg33121253-21255
ORF1ab/nsp16199A199KA6997KnonsynGCgAAg320.66666721253-21255
ORF1ab/nsp16199A199KA6997KnonsynGCGAAA310.33333321253-21255
ORF1ab/nsp16199A199del1A6997del1delgCgg-g310.33333321253-21255
ORF1ab/nsp16199A199del1A6997del1delGcg-cg310.33333321253-21255
ORF1ab/nsp16199A199del1A6997del1delgcGgc-310.33333321253-21255
ORF1ab/nsp16199A199QA6997QnonsynGCgCAg22121253-21255
ORF1ab/nsp16199A199XA6997XnonsynGCgTAg22121253-21255
ORF1ab/nsp16199A199RA6997RnonsynGCGAGA210.521253-21255
ORF1ab/nsp16199A199RA6997RnonsynGCgAGg210.521253-21255
ORF1ab/nsp16199A199del2A6997del2delGCg--g11121253-21255
ORF1ab/nsp16199A199IA6997InonsynGCGATC11121253-21255

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16199A199AgcGgcC173329186699All0.033151
ORF1ab/nsp16199A199AgcGgcT12225186699All0.002338
ORF1ab/nsp16199A199AgcGgcA1145186699All0.000219
ORF1ab/nsp16199A199AgcGgcC7098771000B.1.1770.934728
ORF1ab/nsp16199A199AgcGgcT1171000B.1.1770.000145
ORF1ab/nsp16199A199AgcGgcA271000B.1.1770.000026
ORF1ab/nsp16199A199AgcGgcC1271812719B.1.177.210.972547
ORF1ab/nsp16199A199AgcGgcT112719B.1.177.210.000076
ORF1ab/nsp16199A199AgcGgcC65166516B.1.177.120.988471
ORF1ab/nsp16199A199AgcGgcC58075807B.1.177.70.957303
ORF1ab/nsp16199A199AgcGgcC52905290B.1.177.860.970464
ORF1ab/nsp16199A199AgcGgcC51665166B.1.177.810.978039
ORF1ab/nsp16199A199AgcGgcC45614561B.1.177.40.962642
ORF1ab/nsp16199A199AgcGgcT43384339AY.700.904504
ORF1ab/nsp16199A199AgcGgcC14339AY.700.000209
ORF1ab/nsp16199A199AgcGgcC41414141B.1.177.600.904543
ORF1ab/nsp16199A199AgcGgcC34443444B.1.177.570.967688
ORF1ab/nsp16199A199AgcGgcT18113146B.1.1.70.001621
ORF1ab/nsp16199A199AgcGgcC10163146B.1.1.70.00091
ORF1ab/nsp16199A199AgcGgcA3193146B.1.1.70.000286
ORF1ab/nsp16199A199AgcGgcC25962596B.1.177.450.989706
ORF1ab/nsp16199A199AgcGgcC20932093B.1.177.820.999045
ORF1ab/nsp16199A199AgcGgcC12441988B.1.617.20.004684
ORF1ab/nsp16199A199AgcGgcT5781988B.1.617.20.002176
ORF1ab/nsp16199A199AgcGgcA1661988B.1.617.20.000625
ORF1ab/nsp16199A199AgcGgcC17641764B.1.177.440.915413
ORF1ab/nsp16199A199AgcGgcC15731573B.1.177.540.953911
ORF1ab/nsp16199A199AgcGgcC15441544B.1.177.150.974132
ORF1ab/nsp16199A199AgcGgcC14791479B.1.177.160.982724
ORF1ab/nsp16199A199AgcGgcC14691469B.1.177.650.977379
ORF1ab/nsp16199A199AgcGgcC13541433B.1.177.560.903872
ORF1ab/nsp16199A199AgcGgcT791433B.1.177.560.052737
ORF1ab/nsp16199A199AgcGgcC14161416B.1.177.350.978576
ORF1ab/nsp16199A199AgcGgcC13471347B.1.177.770.978214
ORF1ab/nsp16199A199AgcGgcC13261326B.1.177.870.965066
ORF1ab/nsp16199A199AgcGgcC12981298B.1.177.80.976674
ORF1ab/nsp16199A199AgcGgcT7031245AY.40.001094
ORF1ab/nsp16199A199AgcGgcC5101245AY.40.000794
ORF1ab/nsp16199A199AgcGgcA321245AY.40.00005
ORF1ab/nsp16199A199AgcGgcC12411242B.1.177.730.702718
ORF1ab/nsp16199A199AgcGgcT11242B.1.177.730.000566
ORF1ab/nsp16199A199AgcGgcC11871187B.1.177.170.974548
ORF1ab/nsp16199A199AgcGgcC10991099B.1.177.100.964881
ORF1ab/nsp16199A199AgcGgcC10891089B.1.177.420.974061
ORF1ab/nsp16199A199AgcGgcC10831083B.1.177.460.99449
ORF1ab/nsp16199A199AgcGgcC974974B.1.177.60.951172
ORF1ab/nsp16199A199AgcGgcC959959B.1.177.750.997919
ORF1ab/nsp16199A199AgcGgcC819819B.1.177.620.976162
ORF1ab/nsp16199A199AgcGgcC810810B.1.177.180.939675
ORF1ab/nsp16199A199AgcGgcC652786AY.1020.017287
ORF1ab/nsp16199A199AgcGgcT72786AY.1020.001909
ORF1ab/nsp16199A199AgcGgcA62786AY.1020.001644
ORF1ab/nsp16199A199AgcGgcC780780B.1.177.50.968944
ORF1ab/nsp16199A199AgcGgcC696776B.10.006375
ORF1ab/nsp16199A199AgcGgcT73776B.10.000669
ORF1ab/nsp16199A199AgcGgcA7776B.10.000064
ORF1ab/nsp16199A199AgcGgcC765765B.1.177.240.990933
ORF1ab/nsp16199A199AgcGgcC718718B.1.177.320.968961
ORF1ab/nsp16199A199AgcGgcC715715W.40.966216
ORF1ab/nsp16199A199AgcGgcC713713B.1.177.580.949401
ORF1ab/nsp16199A199AgcGgcC695695B.1.177.90.925433
ORF1ab/nsp16199A199AgcGgcC669669B.1.177.190.957082
ORF1ab/nsp16199A199AgcGgcC662662B.1.177.690.982196
ORF1ab/nsp16199A199AgcGgcC634634B.1.177.830.939259
ORF1ab/nsp16199A199AgcGgcC630630B.1.177.200.955994
ORF1ab/nsp16199A199AgcGgcC611611B.1.177.430.902511
ORF1ab/nsp16199A199AgcGgcC607607B.1.177.330.998355
ORF1ab/nsp16199A199AgcGgcC565565B.1.177.110.959253
ORF1ab/nsp16199A199AgcGgcC539539B.1.177.520.947276
ORF1ab/nsp16199A199AgcGgcC523523B.1.177.801
ORF1ab/nsp16199A199AgcGgcC423423B.1.177.790.990632
ORF1ab/nsp16199A199AgcGgcC404404B.1.177.550.941725
ORF1ab/nsp16199A199AgcGgcC403403B.1.177.530.964115
ORF1ab/nsp16199A199AgcGgcC398398B.1.177.410.995
ORF1ab/nsp16199A199AgcGgcC394394B.1.177.760.982544
ORF1ab/nsp16199A199AgcGgcT214391AY.430.000948
ORF1ab/nsp16199A199AgcGgcC156391AY.430.000691
ORF1ab/nsp16199A199AgcGgcA21391AY.430.000093
ORF1ab/nsp16199A199AgcGgcT313385AY.30.003113
ORF1ab/nsp16199A199AgcGgcC59385AY.30.000587
ORF1ab/nsp16199A199AgcGgcA13385AY.30.000129
ORF1ab/nsp16199A199AgcGgcC377385R.10.033933
ORF1ab/nsp16199A199AgcGgcA8385R.10.00072
ORF1ab/nsp16199A199AgcGgcT357357B.1.36.370.991667
ORF1ab/nsp16199A199AgcGgcC354354B.1.177.630.956757
ORF1ab/nsp16199A199AgcGgcC336336Z.10.971098
ORF1ab/nsp16199A199AgcGgcT239332B.1.20.002104
ORF1ab/nsp16199A199AgcGgcC79332B.1.20.000696
ORF1ab/nsp16199A199AgcGgcA14332B.1.20.000123
ORF1ab/nsp16199A199AgcGgcC323323B.1.177.300.811558
ORF1ab/nsp16199A199AgcGgcC313313B.1.177.480.978125
ORF1ab/nsp16199A199AgcGgcC157312AY.440.000956
ORF1ab/nsp16199A199AgcGgcT85312AY.440.000517
ORF1ab/nsp16199A199AgcGgcA70312AY.440.000426
ORF1ab/nsp16199A199AgcGgcC162304AY.250.000974
ORF1ab/nsp16199A199AgcGgcT127304AY.250.000764
ORF1ab/nsp16199A199AgcGgcA15304AY.250.00009
ORF1ab/nsp16199A199AgcGgcT206299AY.1030.001279
ORF1ab/nsp16199A199AgcGgcC68299AY.1030.000422
ORF1ab/nsp16199A199AgcGgcA25299AY.1030.000155
ORF1ab/nsp16199A199AgcGgcT284294B.1.6210.025139
ORF1ab/nsp16199A199AgcGgcC9294B.1.6210.000797
ORF1ab/nsp16199A199AgcGgcA1294B.1.6210.000089
ORF1ab/nsp16199A199AgcGgcC292292B.1.177.720.989831
ORF1ab/nsp16199A199AgcGgcC211287AY.680.057761
ORF1ab/nsp16199A199AgcGgcA74287AY.680.020257
ORF1ab/nsp16199A199AgcGgcT2287AY.680.000547
ORF1ab/nsp16199A199AgcGgcC275275B.1.177.230.889968
ORF1ab/nsp16199A199AgcGgcC259259U.31
ORF1ab/nsp16199A199AgcGgcT229231AY.29.10.050496
ORF1ab/nsp16199A199AgcGgcC2231AY.29.10.000441
ORF1ab/nsp16199A199VgCggTg221223All0.000042
ORF1ab/nsp16199A199VgCGgTC2223All0
ORF1ab/nsp16199A199AgcGgcC145223B.1.10.00263
ORF1ab/nsp16199A199AgcGgcT67223B.1.10.001215
ORF1ab/nsp16199A199AgcGgcA11223B.1.10.0002
ORF1ab/nsp16199A199AgcGgcC216216B.1.177.510.986301
ORF1ab/nsp16199A199AgcGgcC212212B.1.177.20.963636
ORF1ab/nsp16199A199AgcGgcC199199W.20.961353
ORF1ab/nsp16199A199AgcGgcC197197B.1.177.500.924883
ORF1ab/nsp16199A199AgcGgcC192192B.1.177.400.989691
ORF1ab/nsp16199A199AgcGgcC185185W.30.973684
ORF1ab/nsp16199A199AgcGgcC181181B.1.177.850.983696
ORF1ab/nsp16199A199AgcGgcT180180A.290.957447
ORF1ab/nsp16199A199AgcGgcT177177B.1.6300.926702
ORF1ab/nsp16199A199delGCG---169169All0.000032
ORF1ab/nsp16199A199AgcGgcC128163AY.9.20.004701
ORF1ab/nsp16199A199AgcGgcT28163AY.9.20.001028
ORF1ab/nsp16199A199AgcGgcA7163AY.9.20.000257
ORF1ab/nsp16199A199AgcGgcC160160B.1.177.140.97561
ORF1ab/nsp16199A199AgcGgcC160160B.1.177.700.946746
ORF1ab/nsp16199A199AgcGgcT150150B.1.160.170.255102
ORF1ab/nsp16199A199AgcGgcC142142B.1.177.840.946667
ORF1ab/nsp16199A199AgcGgcC136136AA.10.985507
ORF1ab/nsp16199A199AgcGgcC130130AA.21
ORF1ab/nsp16199A199AgcGgcC129129B.1.177.30.984733
ORF1ab/nsp16199A199AgcGgcC66129P.10.00104
ORF1ab/nsp16199A199AgcGgcT55129P.10.000866
ORF1ab/nsp16199A199AgcGgcA8129P.10.000126
ORF1ab/nsp16199A199AgcGgcC123123B.1.177.670.938931
ORF1ab/nsp16199A199AgcGgcC123123B.1.5410.544248
ORF1ab/nsp16199A199AgcGgcC113121B.1.2580.00752
ORF1ab/nsp16199A199AgcGgcT8121B.1.2580.000532
ORF1ab/nsp16199A199AgcGgcT117118AY.99.20.010782
ORF1ab/nsp16199A199AgcGgcC1118AY.99.20.000092
ORF1ab/nsp16199A199AgcGgcT65116AY.260.00184
ORF1ab/nsp16199A199AgcGgcA28116AY.260.000793
ORF1ab/nsp16199A199AgcGgcC23116AY.260.000651
ORF1ab/nsp16199A199AgcGgcT93116AY.290.001467
ORF1ab/nsp16199A199AgcGgcC18116AY.290.000284
ORF1ab/nsp16199A199AgcGgcA5116AY.290.000079
ORF1ab/nsp16199A199AgcGgcT102113AY.1000.004693
ORF1ab/nsp16199A199AgcGgcC8113AY.1000.000368
ORF1ab/nsp16199A199AgcGgcA3113AY.1000.000138
ORF1ab/nsp16199A199AgcGgcC113113B.1.177.260.79021
ORF1ab/nsp16199A199AgcGgcC112112U.20.982456
ORF1ab/nsp16199A199AgcGgcC109109AA.71
ORF1ab/nsp16199A199AgcGgcC109109W.10.947826
ORF1ab/nsp16199A199AgcGgcC105105AA.40.954545
ORF1ab/nsp16199A199AgcGgcC102102B.1.177.270.962264
ORF1ab/nsp16199A199AgcGgcT101101B.1.1.280.031435
ORF1ab/nsp16199A199AgcGgcC9494B.1.177.710.949495
ORF1ab/nsp16199A199AgcGgcC9393B.1.177.380.96875
ORF1ab/nsp16199A199AgcGgcC5891AY.390.001433
ORF1ab/nsp16199A199AgcGgcT2991AY.390.000717
ORF1ab/nsp16199A199AgcGgcA491AY.390.000099
ORF1ab/nsp16199A199AgcGgcC9191B.1.177.780.883495
ORF1ab/nsp16199A199AgcGgcC7090B.1.1600.002183
ORF1ab/nsp16199A199AgcGgcT1890B.1.1600.000561
ORF1ab/nsp16199A199AgcGgcA290B.1.1600.000062
ORF1ab/nsp16199A199AgcGgcC7488B.1.5260.001739
ORF1ab/nsp16199A199AgcGgcT1188B.1.5260.000259
ORF1ab/nsp16199A199AgcGgcA388B.1.5260.000071
ORF1ab/nsp16199A199AgcGgcC8181B.1.177.881
ORF1ab/nsp16199A199AgcGgcC7979B.1.160.300.235119
ORF1ab/nsp16199A199AgcGgcC7878Y.11
ORF1ab/nsp16199A199AgcGgcT4975AY.50.001012
ORF1ab/nsp16199A199AgcGgcC2475AY.50.000496
ORF1ab/nsp16199A199AgcGgcA275AY.50.000041
ORF1ab/nsp16199A199AgcGgcC7474U.10.948718
ORF1ab/nsp16199A199AgcGgcC7373B.1.177.310.83908
ORF1ab/nsp16199A199AgcGgcT7071B.1.2340.009236
ORF1ab/nsp16199A199AgcGgcC171B.1.2340.000132
ORF1ab/nsp16199A199AgcGgcC6167AY.980.004819
ORF1ab/nsp16199A199AgcGgcT567AY.980.000395
ORF1ab/nsp16199A199AgcGgcA167AY.980.000079
ORF1ab/nsp16199A199AgcGgcC6666B.1.177.250.985075
ORF1ab/nsp16199A199AgcGgcC6565B.1.1.1320.970149
ORF1ab/nsp16199A199AgcGgcC6565B.1.177.740.984848
ORF1ab/nsp16199A199AgcGgcT5764AY.920.016375
ORF1ab/nsp16199A199AgcGgcC764AY.920.002011
ORF1ab/nsp16199A199AgcGgcC6464B.1.177.680.969697
ORF1ab/nsp16199A199AgcGgcC6164D.20.004578
ORF1ab/nsp16199A199AgcGgcT364D.20.000225
ORF1ab/nsp16199A199AgcGgcC6363B.1.177.390.969231
ORF1ab/nsp16199A199AgcGgcC6262AA.51
ORF1ab/nsp16199A199AgcGgcT4862AY.130.007727
ORF1ab/nsp16199A199AgcGgcA1362AY.130.002093
ORF1ab/nsp16199A199AgcGgcC162AY.130.000161
ORF1ab/nsp16199A199AgcGgcC6262B.1.177.361
ORF1ab/nsp16199A199AgcGgcC6161AA.60.983871
ORF1ab/nsp16199A199AgcGgcC5661B.1.2210.003978
ORF1ab/nsp16199A199AgcGgcT561B.1.2210.000355
ORF1ab/nsp16199A199AgcGgcC6060B.1.177.590.967742
ORF1ab/nsp16199A199AgcGgcT3959AY.200.001516
ORF1ab/nsp16199A199AgcGgcC1959AY.200.000738
ORF1ab/nsp16199A199AgcGgcA159AY.200.000039
ORF1ab/nsp16199A199TGcgAcg5558All0.000011
ORF1ab/nsp16199A199TGcGAcC358All0.000001
ORF1ab/nsp16199A199AgcGgcC5557AY.5.30.018556
ORF1ab/nsp16199A199AgcGgcT257AY.5.30.000675
ORF1ab/nsp16199A199AgcGgcC5357B.1.4270.002676
ORF1ab/nsp16199A199AgcGgcT457B.1.4270.000202
ORF1ab/nsp16199A199AgcGgcT5154AY.320.027157
ORF1ab/nsp16199A199AgcGgcC354AY.320.001597
ORF1ab/nsp16199A199AgcGgcC5252B.1.177.470.675325
ORF1ab/nsp16199A199AgcGgcT4651B.1.1.2220.009384
ORF1ab/nsp16199A199AgcGgcC551B.1.1.2220.00102
ORF1ab/nsp16199A199AgcGgcC3951B.1.4290.000918
ORF1ab/nsp16199A199AgcGgcT851B.1.4290.000188
ORF1ab/nsp16199A199AgcGgcA451B.1.4290.000094
ORF1ab/nsp16199A199AgcGgcC2949AY.420.001167
ORF1ab/nsp16199A199AgcGgcT1149AY.420.000443
ORF1ab/nsp16199A199AgcGgcA949AY.420.000362
ORF1ab/nsp16199A199AgcGgcC2546C.370.002902
ORF1ab/nsp16199A199AgcGgcA1246C.370.001393
ORF1ab/nsp16199A199AgcGgcT946C.370.001045
ORF1ab/nsp16199A199AgcGgcC4545AA.81
ORF1ab/nsp16199A199AgcGgcT3845AY.610.003982
ORF1ab/nsp16199A199AgcGgcC645AY.610.000629
ORF1ab/nsp16199A199AgcGgcA145AY.610.000105
ORF1ab/nsp16199A199VgCggTg4545B.1.1.70.00004
ORF1ab/nsp16199A199AgcGgcT4245B.1.258.170.004367
ORF1ab/nsp16199A199AgcGgcC345B.1.258.170.000312
ORF1ab/nsp16199A199AgcGgcC4343XA0.955556
ORF1ab/nsp16199A199AgcGgcC3742B0.004729
ORF1ab/nsp16199A199AgcGgcT542B0.000639
ORF1ab/nsp16199A199AgcGgcT3741AY.1110.006777
ORF1ab/nsp16199A199AgcGgcC441AY.1110.000733
ORF1ab/nsp16199A199AgcGgcT2941B.1.1.5190.001152
ORF1ab/nsp16199A199AgcGgcC1141B.1.1.5190.000437
ORF1ab/nsp16199A199AgcGgcA141B.1.1.5190.00004
ORF1ab/nsp16199A199AgcGgcC4141V.10.931818
ORF1ab/nsp16199A199AgcGgcC3539AY.1170.002958
ORF1ab/nsp16199A199AgcGgcT439AY.1170.000338
ORF1ab/nsp16199A199AgcGgcC3739AY.590.019597
ORF1ab/nsp16199A199AgcGgcA139AY.590.00053
ORF1ab/nsp16199A199AgcGgcT139AY.590.00053
ORF1ab/nsp16199A199AgcGgcT3739AY.9.10.003098
ORF1ab/nsp16199A199AgcGgcC239AY.9.10.000167
ORF1ab/nsp16199A199AgcGgcC3939B.1.177.890.95122
ORF1ab/nsp16199A199AgcGgcC1836AY.460.001873
ORF1ab/nsp16199A199AgcGgcA1236AY.460.001249
ORF1ab/nsp16199A199AgcGgcT636AY.460.000624
ORF1ab/nsp16199A199AgcGgcC3636B.1.177.370.972973
ORF1ab/nsp16199A199AgcGgcC3535AA.30.945946
ORF1ab/nsp16199A199AgcGgcT2135AY.4.20.000455
ORF1ab/nsp16199A199AgcGgcC1135AY.4.20.000239
ORF1ab/nsp16199A199AgcGgcA335AY.4.20.000065
ORF1ab/nsp16199A199AgcGgcT3535B.1.2250.538462
ORF1ab/nsp16199A199AgcGgcC3235P.1.120.015489
ORF1ab/nsp16199A199AgcGgcT335P.1.120.001452
ORF1ab/nsp16199A199AgcGgcA3234B.1.1.3180.009656
ORF1ab/nsp16199A199AgcGgcC234B.1.1.3180.000604
ORF1ab/nsp16199A199AgcGgcT1832AY.330.001202
ORF1ab/nsp16199A199AgcGgcC1032AY.330.000668
ORF1ab/nsp16199A199AgcGgcA432AY.330.000267
ORF1ab/nsp16199A199AgcGgcC3131V.21
ORF1ab/nsp16199A199AgcGgcT2430B.1.1.370.004629
ORF1ab/nsp16199A199AgcGgcC630B.1.1.370.001157
ORF1ab/nsp16199A199AgcGgcC3030B.1.160.200.267857
ORF1ab/nsp16199A199AgcGgcA1330B.1.2430.000905
ORF1ab/nsp16199A199AgcGgcT1330B.1.2430.000905
ORF1ab/nsp16199A199AgcGgcC430B.1.2430.000278
ORF1ab/nsp16199A199VgCggTg3030B.1.2790.015408
ORF1ab/nsp16199A199AgcGgcT2230B.1.3510.000654
ORF1ab/nsp16199A199AgcGgcC530B.1.3510.000149
ORF1ab/nsp16199A199AgcGgcA330B.1.3510.000089
ORF1ab/nsp16199A199AgcGgcT3030B.1.6250.070588
ORF1ab/nsp16199A199AgcGgcC2129AY.1180.001316
ORF1ab/nsp16199A199AgcGgcT829AY.1180.000501
ORF1ab/nsp16199A199AgcGgcT1327AY.230.000907
ORF1ab/nsp16199A199AgcGgcC1027AY.230.000697
ORF1ab/nsp16199A199AgcGgcA427AY.230.000279
ORF1ab/nsp16199A199delGCG---2727B.1.20.000238
ORF1ab/nsp16199A199AgcGgcC1626B.1.360.002334
ORF1ab/nsp16199A199AgcGgcT826B.1.360.001167
ORF1ab/nsp16199A199AgcGgcA226B.1.360.000292
ORF1ab/nsp16199A199AgcGgcC1523AY.5.40.004151
ORF1ab/nsp16199A199AgcGgcT623AY.5.40.00166
ORF1ab/nsp16199A199AgcGgcA223AY.5.40.000553
ORF1ab/nsp16199A199AgcGgcC2323B.1.1.390.011723
ORF1ab/nsp16199A199AgcGgcT1623P.1.140.000765
ORF1ab/nsp16199A199AgcGgcA423P.1.140.000191
ORF1ab/nsp16199A199AgcGgcC323P.1.140.000143
ORF1ab/nsp16199A199delGCG---2121B.1.1.70.000019
ORF1ab/nsp16199A199AgcGgcC2121B.1.177.610.913043
ORF1ab/nsp16199A199SGcgTcg1520All0.000003
ORF1ab/nsp16199A199SGcGTcT420All0.000001
ORF1ab/nsp16199A199SGcGTcC120All0
ORF1ab/nsp16199A199AgcGgcC1120AY.98.10.000533
ORF1ab/nsp16199A199AgcGgcT920AY.98.10.000436
ORF1ab/nsp16199A199AgcGgcC2020B.1.177.490.740741
ORF1ab/nsp16199A199AgcGgcC1019AY.470.000311
ORF1ab/nsp16199A199AgcGgcT819AY.470.000249
ORF1ab/nsp16199A199AgcGgcA119AY.470.000031
ORF1ab/nsp16199A199AgcGgcC1919B.1.177.341
ORF1ab/nsp16199A199AgcGgcC1919B.1.177.660.791667
ORF1ab/nsp16199A199AgcGgcC1818A.270.029801
ORF1ab/nsp16199A199AgcGgcT1418AY.1130.001993
ORF1ab/nsp16199A199AgcGgcC318AY.1130.000427
ORF1ab/nsp16199A199AgcGgcA118AY.1130.000142
ORF1ab/nsp16199A199AgcGgcT1018AY.4.50.001075
ORF1ab/nsp16199A199AgcGgcC518AY.4.50.000537
ORF1ab/nsp16199A199AgcGgcA318AY.4.50.000322
ORF1ab/nsp16199A199AgcGgcA918AY.540.000858
ORF1ab/nsp16199A199AgcGgcT518AY.540.000477
ORF1ab/nsp16199A199AgcGgcC418AY.540.000381
ORF1ab/nsp16199A199AgcGgcT1217AY.1190.000424
ORF1ab/nsp16199A199AgcGgcC317AY.1190.000106
ORF1ab/nsp16199A199AgcGgcA217AY.1190.000071
ORF1ab/nsp16199A199VgCggTg1717B.10.000156
ORF1ab/nsp16199A199AgcGgcA816AY.1210.001083
ORF1ab/nsp16199A199AgcGgcT516AY.1210.000677
ORF1ab/nsp16199A199AgcGgcC316AY.1210.000406
ORF1ab/nsp16199A199AgcGgcC916AY.39.10.000357
ORF1ab/nsp16199A199AgcGgcT516AY.39.10.000198
ORF1ab/nsp16199A199AgcGgcA216AY.39.10.000079
ORF1ab/nsp16199A199VgCggTg1616B.1.4290.000376
ORF1ab/nsp16199A199AgcGgcC1316B.1.466.20.005086
ORF1ab/nsp16199A199AgcGgcT316B.1.466.20.001174
ORF1ab/nsp16199A199AgcGgcT1315AY.300.005144
ORF1ab/nsp16199A199AgcGgcA115AY.300.000396
ORF1ab/nsp16199A199AgcGgcC115AY.300.000396
ORF1ab/nsp16199A199AgcGgcT1415B.1.1.3970.031532
ORF1ab/nsp16199A199AgcGgcC115B.1.1.3970.002252
ORF1ab/nsp16199A199AgcGgcA915B.1.36.290.004656
ORF1ab/nsp16199A199AgcGgcT515B.1.36.290.002587
ORF1ab/nsp16199A199AgcGgcC115B.1.36.290.000517
ORF1ab/nsp16199A199VgCggTg1515B.1.5250.001697
ORF1ab/nsp16199A199AgcGgcT814AY.1200.000297
ORF1ab/nsp16199A199AgcGgcC514AY.1200.000186
ORF1ab/nsp16199A199AgcGgcA114AY.1200.000037
ORF1ab/nsp16199A199VgCggTg1414AY.260.000396
ORF1ab/nsp16199A199delGCG---1414AY.430.000062
ORF1ab/nsp16199A199AgcGgcT1213AY.140.001056
ORF1ab/nsp16199A199AgcGgcC113AY.140.000088
ORF1ab/nsp16199A199AgcGgcT813AY.450.000973
ORF1ab/nsp16199A199AgcGgcC413AY.450.000487
ORF1ab/nsp16199A199AgcGgcA113AY.450.000122
ORF1ab/nsp16199A199AgcGgcT1013B.1.1.3110.003582
ORF1ab/nsp16199A199AgcGgcC313B.1.1.3110.001074
ORF1ab/nsp16199A199AgcGgcC1112A.10.0031
ORF1ab/nsp16199A199AgcGgcT112A.10.000282
ORF1ab/nsp16199A199AgcGgcC1112AY.520.008958
ORF1ab/nsp16199A199AgcGgcT112AY.520.000814
ORF1ab/nsp16199A199delGCG---1212B.10.00011
ORF1ab/nsp16199A199AgcGgcC1212B.1.36.170.005929
ORF1ab/nsp16199A199AgcGgcA611AY.1100.000676
ORF1ab/nsp16199A199AgcGgcC411AY.1100.000451
ORF1ab/nsp16199A199AgcGgcT111AY.1100.000113
ORF1ab/nsp16199A199AgcGgcT811AY.360.001186
ORF1ab/nsp16199A199AgcGgcC211AY.360.000296
ORF1ab/nsp16199A199AgcGgcA111AY.360.000148
ORF1ab/nsp16199A199VgCggTg1111AY.40.000017
ORF1ab/nsp16199A199AgcGgcA810AY.190.009122
ORF1ab/nsp16199A199AgcGgcC110AY.190.00114
ORF1ab/nsp16199A199AgcGgcT110AY.190.00114
ORF1ab/nsp16199A199AgcGgcC610AY.46.20.003812
ORF1ab/nsp16199A199AgcGgcT410AY.46.20.002541
ORF1ab/nsp16199A199AgcGgcT710AY.46.40.001152
ORF1ab/nsp16199A199AgcGgcC310AY.46.40.000494
ORF1ab/nsp16199A199AgcGgcT910AY.60.00037
ORF1ab/nsp16199A199AgcGgcC110AY.60.000041
ORF1ab/nsp16199A199TGcgAcg1010AY.930.002731
ORF1ab/nsp16199A199AgcGgcC610B.1.1.2140.000333
ORF1ab/nsp16199A199AgcGgcA210B.1.1.2140.000111
ORF1ab/nsp16199A199AgcGgcT210B.1.1.2140.000111
ORF1ab/nsp16199A199TGcgAcg1010B.1.1.70.000009
ORF1ab/nsp16199A199AgcGgcC1010B.1.177.640.909091
ORF1ab/nsp16199A199AgcGgcC810B.1.2400.001725
ORF1ab/nsp16199A199AgcGgcA210B.1.2400.000431
ORF1ab/nsp16199A199VgCggTg99AY.290.000142
ORF1ab/nsp16199A199AgcGgcC89B.1.1.3010.009434
ORF1ab/nsp16199A199AgcGgcT19B.1.1.3010.001179
ORF1ab/nsp16199A199AgcGgcC59B.1.1.700.001705
ORF1ab/nsp16199A199AgcGgcT49B.1.1.700.001364
ORF1ab/nsp16199A199AgcGgcC59B.1.6370.000365
ORF1ab/nsp16199A199AgcGgcT49B.1.6370.000292
ORF1ab/nsp16199A199TGcgAcg99P.10.000142
ORF1ab/nsp16199A199AgcGgcC88A.23.10.005634
ORF1ab/nsp16199A199EgCggAg88All0.000002
ORF1ab/nsp16199A199AgcGgcC58AY.270.000324
ORF1ab/nsp16199A199AgcGgcT28AY.270.000129
ORF1ab/nsp16199A199AgcGgcA18AY.270.000065
ORF1ab/nsp16199A199AgcGgcC68AY.3.10.000512
ORF1ab/nsp16199A199AgcGgcA18AY.3.10.000085
ORF1ab/nsp16199A199AgcGgcT18AY.3.10.000085
ORF1ab/nsp16199A199AgcGgcC88AY.34.10.00408
ORF1ab/nsp16199A199AgcGgcC78AY.7.10.000789
ORF1ab/nsp16199A199AgcGgcT18AY.7.10.000113
ORF1ab/nsp16199A199AgcGgcC88AZ.20.006568
ORF1ab/nsp16199A199AgcGgcC68B.1.1.3060.00263
ORF1ab/nsp16199A199AgcGgcT28B.1.1.3060.000877
ORF1ab/nsp16199A199AgcGgcC58B.1.5170.002135
ORF1ab/nsp16199A199AgcGgcT38B.1.5170.001281
ORF1ab/nsp16199A199AgcGgcT88B.1.617.10.001032
ORF1ab/nsp16199A199delGCG---88P.10.000126
ORF1ab/nsp16199A199AgcGgcT58Q.10.000632
ORF1ab/nsp16199A199AgcGgcC28Q.10.000253
ORF1ab/nsp16199A199AgcGgcA18Q.10.000126
ORF1ab/nsp16199A199AgcGgcT77A.210.019391
ORF1ab/nsp16199A199AgcGgcT67AY.1160.001721
ORF1ab/nsp16199A199AgcGgcC17AY.1160.000287
ORF1ab/nsp16199A199AgcGgcT47AY.90.00027
ORF1ab/nsp16199A199AgcGgcC27AY.90.000135
ORF1ab/nsp16199A199AgcGgcA17AY.90.000068
ORF1ab/nsp16199A199AgcGgcC77B.1.1060.21875
ORF1ab/nsp16199A199AgcGgcC77B.1.160.320.030043
ORF1ab/nsp16199A199AgcGgcC57P.1.150.001162
ORF1ab/nsp16199A199AgcGgcT27P.1.150.000465
ORF1ab/nsp16199A199AgcGgcA47P.20.000747
ORF1ab/nsp16199A199AgcGgcC27P.20.000373
ORF1ab/nsp16199A199AgcGgcT17P.20.000187
ORF1ab/nsp16199A199AgcGgcC46A.2.50.001996
ORF1ab/nsp16199A199AgcGgcT26A.2.50.000998
ORF1ab/nsp16199A199AgcGgcC66AY.46.60.000433
ORF1ab/nsp16199A199AgcGgcC46AY.750.000224
ORF1ab/nsp16199A199AgcGgcT26AY.750.000112
ORF1ab/nsp16199A199AgcGgcT36AY.75.10.000541
ORF1ab/nsp16199A199AgcGgcC26AY.75.10.000361
ORF1ab/nsp16199A199AgcGgcA16AY.75.10.00018
ORF1ab/nsp16199A199AgcGgcC36AY.840.001312
ORF1ab/nsp16199A199AgcGgcT26AY.840.000875
ORF1ab/nsp16199A199AgcGgcA16AY.840.000437
ORF1ab/nsp16199A199AgcGgcT36B.1.36.80.003
ORF1ab/nsp16199A199AgcGgcA26B.1.36.80.002
ORF1ab/nsp16199A199AgcGgcC16B.1.36.80.001
ORF1ab/nsp16199A199AgcGgcC66B.1.416.10.009375
ORF1ab/nsp16199A199AgcGgcC36B.1.5960.000261
ORF1ab/nsp16199A199AgcGgcT36B.1.5960.000261
ORF1ab/nsp16199A199AgcGgcT66B.1.619.10.003849
ORF1ab/nsp16199A199AgcGgcC66B.4.10.113208
ORF1ab/nsp16199A199AgcGgcT45A0.001548
ORF1ab/nsp16199A199AgcGgcC15A0.000387
ORF1ab/nsp16199A199AgcGgcT55AY.100.00265
ORF1ab/nsp16199A199AgcGgcC35AY.1060.001005
ORF1ab/nsp16199A199AgcGgcT25AY.1060.00067
ORF1ab/nsp16199A199VgCggTg55AY.1170.000423
ORF1ab/nsp16199A199AgcGgcT55AY.240.002155
ORF1ab/nsp16199A199AgcGgcC55AY.910.003652
ORF1ab/nsp16199A199AgcGgcT35B.1.1.250.001706
ORF1ab/nsp16199A199AgcGgcC25B.1.1.250.001137
ORF1ab/nsp16199A199VgCggTg55B.1.1.2530.012531
ORF1ab/nsp16199A199AgcGgcT45B.1.1.2630.006231
ORF1ab/nsp16199A199AgcGgcC15B.1.1.2630.001558
ORF1ab/nsp16199A199AgcGgcC55B.1.1.330.002104
ORF1ab/nsp16199A199AgcGgcT45B.1.2370.0199
ORF1ab/nsp16199A199AgcGgcA15B.1.2370.004975
ORF1ab/nsp16199A199AgcGgcT35B.1.3690.000856
ORF1ab/nsp16199A199AgcGgcA25B.1.3690.00057
ORF1ab/nsp16199A199AgcGgcT55B.1.5770.003436
ORF1ab/nsp16199A199AgcGgcA55P.1.130.004492
ORF1ab/nsp16199A199AgcGgcT45P.1.160.001496
ORF1ab/nsp16199A199AgcGgcC15P.1.160.000374
ORF1ab/nsp16199A199AgcGgcT35P.1.70.000958
ORF1ab/nsp16199A199AgcGgcC15P.1.70.000319
ORF1ab/nsp16199A199AgcGgcA15P.1.70.000319
ORF1ab/nsp16199A199AgcGgcT24AY.1050.001286
ORF1ab/nsp16199A199AgcGgcC14AY.1050.000643
ORF1ab/nsp16199A199AgcGgcA14AY.1050.000643
ORF1ab/nsp16199A199AgcGgcT24AY.1080.002205
ORF1ab/nsp16199A199AgcGgcC24AY.1080.002205
ORF1ab/nsp16199A199AgcGgcT24AY.23.10.000835
ORF1ab/nsp16199A199AgcGgcC24AY.23.10.000835
ORF1ab/nsp16199A199AgcGgcT34AY.340.000291
ORF1ab/nsp16199A199AgcGgcC14AY.340.000097
ORF1ab/nsp16199A199AgcGgcT44AY.370.001264
ORF1ab/nsp16199A199AgcGgcC24AY.620.000871
ORF1ab/nsp16199A199AgcGgcT14AY.620.000436
ORF1ab/nsp16199A199AgcGgcA14AY.620.000436
ORF1ab/nsp16199A199AgcGgcC34AY.770.003382
ORF1ab/nsp16199A199AgcGgcT14AY.770.001127
ORF1ab/nsp16199A199AgcGgcT44AY.940.001771
ORF1ab/nsp16199A199AgcGgcT34B.1.1.10.00098
ORF1ab/nsp16199A199AgcGgcC14B.1.1.10.000327
ORF1ab/nsp16199A199AgcGgcC24B.1.1.1890.003026
ORF1ab/nsp16199A199AgcGgcT24B.1.1.1890.003026
ORF1ab/nsp16199A199AgcGgcC44B.1.1.3150.033898
ORF1ab/nsp16199A199AgcGgcT44B.1.1.3690.001785
ORF1ab/nsp16199A199AgcGgcT44B.1.1.3740.009501
ORF1ab/nsp16199A199AgcGgcT44B.1.1.3980.012903
ORF1ab/nsp16199A199AgcGgcC34B.1.1.4200.003018
ORF1ab/nsp16199A199AgcGgcT14B.1.1.4200.001006
ORF1ab/nsp16199A199TGcgAcg44B.1.1600.000125
ORF1ab/nsp16199A199delGCG---44B.1.3510.000119
ORF1ab/nsp16199A199AgcGgcT44B.1.351.50.002398
ORF1ab/nsp16199A199AgcGgcC44B.1.36.390.008869
ORF1ab/nsp16199A199AgcGgcC44B.1.4160.005076
ORF1ab/nsp16199A199AgcGgcA34B.1.4360.003086
ORF1ab/nsp16199A199AgcGgcC14B.1.4360.001029
ORF1ab/nsp16199A199AgcGgcC44B.1.4730.076923
ORF1ab/nsp16199A199AgcGgcC44B.1.5090.003463
ORF1ab/nsp16199A199delGCG---44B.1.5250.000453
ORF1ab/nsp16199A199delGCG---44B.1.5260.000094
ORF1ab/nsp16199A199AgcGgcT44B.1.5680.004444
ORF1ab/nsp16199A199AgcGgcC44B.1.5890.030303
ORF1ab/nsp16199A199delGCG---44B.1.5960.000349
ORF1ab/nsp16199A199delGCG---44B.1.617.20.000015
ORF1ab/nsp16199A199AgcGgcC44B.390.009324
ORF1ab/nsp16199A199AgcGgcC24B.400.000729
ORF1ab/nsp16199A199AgcGgcA14B.400.000364
ORF1ab/nsp16199A199AgcGgcT14B.400.000364
ORF1ab/nsp16199A199AgcGgcC34C.36.30.001702
ORF1ab/nsp16199A199AgcGgcT14C.36.30.000567
ORF1ab/nsp16199A199AgcGgcC24P.1.20.002312
ORF1ab/nsp16199A199AgcGgcT24P.1.20.002312
ORF1ab/nsp16199A199AgcGgcC24Q.30.00029
ORF1ab/nsp16199A199AgcGgcA14Q.30.000145
ORF1ab/nsp16199A199AgcGgcT14Q.30.000145
ORF1ab/nsp16199A199AgcGgcT24Q.80.00033
ORF1ab/nsp16199A199AgcGgcC24Q.80.00033
ORF1ab/nsp16199A199AgcGgcT33A.2.5.20.004717
ORF1ab/nsp16199A199AgcGgcT33A.50.005769
ORF1ab/nsp16199A199GgCggGg33All0.000001
ORF1ab/nsp16199A199PGcgCcg33All0.000001
ORF1ab/nsp16199A199KGCgAAg23All0
ORF1ab/nsp16199A199KGCGAAA13All0
ORF1ab/nsp16199A199del1Gcg-cg13All0
ORF1ab/nsp16199A199del1gcGgc-13All0
ORF1ab/nsp16199A199del1gCgg-g13All0
ORF1ab/nsp16199A199AgcGgcT23AY.1140.000462
ORF1ab/nsp16199A199AgcGgcC13AY.1140.000231
ORF1ab/nsp16199A199AgcGgcC33AY.120.000948
ORF1ab/nsp16199A199AgcGgcT13AY.160.00038
ORF1ab/nsp16199A199AgcGgcC13AY.160.00038
ORF1ab/nsp16199A199AgcGgcA13AY.160.00038
ORF1ab/nsp16199A199AgcGgcT23AY.16.10.00094
ORF1ab/nsp16199A199AgcGgcA13AY.16.10.00047
ORF1ab/nsp16199A199AgcGgcT33AY.20.001068
ORF1ab/nsp16199A199delGCG---33AY.250.000018
ORF1ab/nsp16199A199VgCggTg33AY.30.00003
ORF1ab/nsp16199A199delGCG---33AY.40.000005
ORF1ab/nsp16199A199TGcgAcg33AY.40.000005
ORF1ab/nsp16199A199AgcGgcC33AY.400.002893
ORF1ab/nsp16199A199AgcGgcC23AY.70.000392
ORF1ab/nsp16199A199AgcGgcT13AY.70.000196
ORF1ab/nsp16199A199AgcGgcT23AY.710.00095
ORF1ab/nsp16199A199AgcGgcC13AY.710.000475
ORF1ab/nsp16199A199AgcGgcA23AY.730.001331
ORF1ab/nsp16199A199AgcGgcC13AY.730.000665
ORF1ab/nsp16199A199AgcGgcC33AY.740.000347
ORF1ab/nsp16199A199AgcGgcC33AY.790.003632
ORF1ab/nsp16199A199AgcGgcA33AZ.30.004559
ORF1ab/nsp16199A199delGCG---33B.1.10.000054
ORF1ab/nsp16199A199AgcGgcC33B.1.1.2770.002276
ORF1ab/nsp16199A199AgcGgcC23B.1.1.3260.003521
ORF1ab/nsp16199A199AgcGgcA13B.1.1.3260.001761
ORF1ab/nsp16199A199AgcGgcA33B.1.1.3370.010791
ORF1ab/nsp16199A199AgcGgcT23B.1.1.4870.011173
ORF1ab/nsp16199A199AgcGgcC13B.1.1.4870.005587
ORF1ab/nsp16199A199AgcGgcC33B.1.1.500.002037
ORF1ab/nsp16199A199SGcgTcg33B.1.1.70.000003
ORF1ab/nsp16199A199TGcGAcC33B.1.177.600.000655
ORF1ab/nsp16199A199AgcGgcT33B.1.2320.001612
ORF1ab/nsp16199A199AgcGgcC33B.1.2360.00616
ORF1ab/nsp16199A199AgcGgcT33B.1.2410.002435
ORF1ab/nsp16199A199VgCggTg33B.1.2580.0002
ORF1ab/nsp16199A199AgcGgcC33B.1.2600.010033
ORF1ab/nsp16199A199AgcGgcC33B.1.3110.000824
ORF1ab/nsp16199A199AgcGgcT33B.1.36.160.004274
ORF1ab/nsp16199A199AgcGgcA13B.1.3960.000706
ORF1ab/nsp16199A199AgcGgcT13B.1.3960.000706
ORF1ab/nsp16199A199AgcGgcC13B.1.3960.000706
ORF1ab/nsp16199A199AgcGgcC23B.1.4680.011429
ORF1ab/nsp16199A199AgcGgcT13B.1.4680.005714
ORF1ab/nsp16199A199AgcGgcC33B.1.4700.004213
ORF1ab/nsp16199A199AgcGgcC23B.1.5250.000226
ORF1ab/nsp16199A199AgcGgcT13B.1.5250.000113
ORF1ab/nsp16199A199AgcGgcC23B.1.5300.014286
ORF1ab/nsp16199A199AgcGgcT13B.1.5300.007143
ORF1ab/nsp16199A199AgcGgcC23B.1.5400.019417
ORF1ab/nsp16199A199AgcGgcT13B.1.5400.009709
ORF1ab/nsp16199A199AgcGgcT23B.1.5610.000794
ORF1ab/nsp16199A199AgcGgcC13B.1.5610.000397
ORF1ab/nsp16199A199AgcGgcC23B.1.6090.000959
ORF1ab/nsp16199A199AgcGgcT13B.1.6090.000479
ORF1ab/nsp16199A199TGcgAcg33B.1.617.20.000011
ORF1ab/nsp16199A199SGcgTcg23B.1.617.20.000008
ORF1ab/nsp16199A199SGcGTcT13B.1.617.20.000004
ORF1ab/nsp16199A199AgcGgcT33B.1.6280.001057
ORF1ab/nsp16199A199delGCG---33C.370.000348
ORF1ab/nsp16199A199AgcGgcC23P.1.10.000635
ORF1ab/nsp16199A199AgcGgcA13P.1.10.000318
ORF1ab/nsp16199A199delGCG---33P.1.150.000697
ORF1ab/nsp16199A199AgcGgcT23P.1.170.000324
ORF1ab/nsp16199A199AgcGgcC13P.1.170.000162
ORF1ab/nsp16199A199EgCggAg220.111111
ORF1ab/nsp16199A199AgcGgcC220.111111
ORF1ab/nsp16199A199QGCgCAg220.111111
ORF1ab/nsp16199A199delGCG---220.111111
ORF1ab/nsp16199A199XGCgTAg220.111111
ORF1ab/nsp16199A199AgcGgcA12A.2.40.003367
ORF1ab/nsp16199A199AgcGgcT12A.2.40.003367
ORF1ab/nsp16199A199AgcGgcC22AE.80.000978
ORF1ab/nsp16199A199QGCgCAg22All0
ORF1ab/nsp16199A199XGCgTAg22All0
ORF1ab/nsp16199A199RGCgAGg12All0
ORF1ab/nsp16199A199RGCGAGA12All0
ORF1ab/nsp16199A199TGcgAcg22AY.1030.000012
ORF1ab/nsp16199A199delGCG---22AY.1100.000225
ORF1ab/nsp16199A199AgcGgcA12AY.120.10.000321
ORF1ab/nsp16199A199AgcGgcT12AY.120.10.000321
ORF1ab/nsp16199A199delGCG---22AY.30.00002
ORF1ab/nsp16199A199AgcGgcT22AY.350.000466
ORF1ab/nsp16199A199VgCggTg22AY.390.000049
ORF1ab/nsp16199A199AgcGgcT12AY.4.2.10.000149
ORF1ab/nsp16199A199AgcGgcA12AY.4.2.10.000149
ORF1ab/nsp16199A199RGCgAGg12AY.430.000004
ORF1ab/nsp16199A199RGCGAGA12AY.430.000004
ORF1ab/nsp16199A199VgCGgTC12AY.440.000006
ORF1ab/nsp16199A199VgCggTg12AY.440.000006
ORF1ab/nsp16199A199AgcGgcT12AY.530.000288
ORF1ab/nsp16199A199AgcGgcC12AY.530.000288
ORF1ab/nsp16199A199AgcGgcA12AY.650.000533
ORF1ab/nsp16199A199AgcGgcT12AY.650.000533
ORF1ab/nsp16199A199AgcGgcT22AY.670.000929
ORF1ab/nsp16199A199AgcGgcT22AY.870.001665
ORF1ab/nsp16199A199AgcGgcT12AY.930.000273
ORF1ab/nsp16199A199AgcGgcC12AY.930.000273
ORF1ab/nsp16199A199AgcGgcT22AY.970.003401
ORF1ab/nsp16199A199VgCggTg22B.1.10.000036
ORF1ab/nsp16199A199AgcGgcC22B.1.1.1410.004024
ORF1ab/nsp16199A199AgcGgcC22B.1.1.1570.001826
ORF1ab/nsp16199A199AgcGgcT12B.1.1.1700.001247
ORF1ab/nsp16199A199AgcGgcC12B.1.1.1700.001247
ORF1ab/nsp16199A199delGCG---22B.1.1.1740.006757
ORF1ab/nsp16199A199AgcGgcC22B.1.1.2160.001781
ORF1ab/nsp16199A199AgcGgcC12B.1.1.2410.00207
ORF1ab/nsp16199A199AgcGgcA12B.1.1.2410.00207
ORF1ab/nsp16199A199AgcGgcT12B.1.1.2840.000107
ORF1ab/nsp16199A199AgcGgcA12B.1.1.2840.000107
ORF1ab/nsp16199A199AgcGgcT22B.1.1.2970.004474
ORF1ab/nsp16199A199AgcGgcT12B.1.1.4090.002833
ORF1ab/nsp16199A199AgcGgcC12B.1.1.4090.002833
ORF1ab/nsp16199A199AgcGgcT22B.1.1.4160.00181
ORF1ab/nsp16199A199AgcGgcC22B.1.1.4320.002532
ORF1ab/nsp16199A199VgCggTg22B.1.1.5190.000079
ORF1ab/nsp16199A199AgcGgcC22B.1.1.5210.010695
ORF1ab/nsp16199A199AgcGgcT22B.1.110.30.001437
ORF1ab/nsp16199A199AgcGgcT12B.1.1110.001175
ORF1ab/nsp16199A199AgcGgcC12B.1.1110.001175
ORF1ab/nsp16199A199AgcGgcC22B.1.1180.013423
ORF1ab/nsp16199A199AgcGgcC22B.1.160.100.016129
ORF1ab/nsp16199A199AgcGgcC22B.1.160.140.004237
ORF1ab/nsp16199A199AgcGgcC12B.1.160.160.000929
ORF1ab/nsp16199A199AgcGgcA12B.1.160.160.000929
ORF1ab/nsp16199A199delGCG---22B.1.1770.000026
ORF1ab/nsp16199A199AgcGgcT22B.1.221.30.001667
ORF1ab/nsp16199A199AgcGgcC22B.1.258.210.015504
ORF1ab/nsp16199A199AgcGgcC22B.1.2810.043478
ORF1ab/nsp16199A199AgcGgcC12B.1.351.30.000876
ORF1ab/nsp16199A199AgcGgcA12B.1.351.30.000876
ORF1ab/nsp16199A199AgcGgcT22B.1.36.10.002281
ORF1ab/nsp16199A199AgcGgcT12B.1.36.360.000602
ORF1ab/nsp16199A199AgcGgcC12B.1.36.360.000602
ORF1ab/nsp16199A199AgcGgcA12B.1.3750.00082
ORF1ab/nsp16199A199AgcGgcC12B.1.3750.00082
ORF1ab/nsp16199A199AgcGgcC12B.1.3890.001002
ORF1ab/nsp16199A199AgcGgcA12B.1.3890.001002
ORF1ab/nsp16199A199delGCG---22B.1.4290.000047
ORF1ab/nsp16199A199AgcGgcT22B.1.438.10.000215
ORF1ab/nsp16199A199AgcGgcA12B.1.4590.004082
ORF1ab/nsp16199A199AgcGgcT12B.1.4590.004082
ORF1ab/nsp16199A199AgcGgcC22B.1.4990.002101
ORF1ab/nsp16199A199TGcgAcg22B.1.5260.000047
ORF1ab/nsp16199A199AgcGgcT22B.1.5510.002581
ORF1ab/nsp16199A199AgcGgcT12B.1.5580.004566
ORF1ab/nsp16199A199AgcGgcC12B.1.5580.004566
ORF1ab/nsp16199A199AgcGgcC12B.1.5640.000426
ORF1ab/nsp16199A199AgcGgcT12B.1.5640.000426
ORF1ab/nsp16199A199AgcGgcC22B.1.5750.000607
ORF1ab/nsp16199A199AgcGgcT22B.1.5820.000981
ORF1ab/nsp16199A199VgCggTg22B.1.617.20.000008
ORF1ab/nsp16199A199VgCggTg22B.1.6230.001073
ORF1ab/nsp16199A199AgcGgcT22B.40.004415
ORF1ab/nsp16199A199AgcGgcT12B.550.00295
ORF1ab/nsp16199A199AgcGgcC12B.550.00295
ORF1ab/nsp16199A199AgcGgcT12B.6.60.000889
ORF1ab/nsp16199A199AgcGgcC12B.6.60.000889
ORF1ab/nsp16199A199AgcGgcT22C.160.002121
ORF1ab/nsp16199A199AgcGgcT12C.360.000911
ORF1ab/nsp16199A199AgcGgcC12C.360.000911
ORF1ab/nsp16199A199SGcGTcT12D.20.000075
ORF1ab/nsp16199A199SGcgTcg12D.20.000075
ORF1ab/nsp16199A199VgCggTg22N.50.003534
ORF1ab/nsp16199A199SGcgTcg22P.10.000032
ORF1ab/nsp16199A199AgcGgcC22P.1.100.000539
ORF1ab/nsp16199A199VgCggTg22P.1.100.000539
ORF1ab/nsp16199A199VgCggTg22P.1.170.000324
ORF1ab/nsp16199A199delGCG---22P.1.70.000639
ORF1ab/nsp16199A199AgcGgcT11A.20.000662
ORF1ab/nsp16199A199AgcGgcA11A.2.20.001689
ORF1ab/nsp16199A199delGCG---11A.2.40.003367
ORF1ab/nsp16199A199AgcGgcT11A.250.018182
ORF1ab/nsp16199A199SGcgTcg11A.270.001656
ORF1ab/nsp16199A199AgcGgcT11A.30.002096
ORF1ab/nsp16199A199AgcGgcC11AD.20.000219
ORF1ab/nsp16199A199del2GCg--g11All0
ORF1ab/nsp16199A199IGCGATC11All0
ORF1ab/nsp16199A199VgCggTg11AU.20.002421
ORF1ab/nsp16199A199delGCG---11AV.10.005051
ORF1ab/nsp16199A199delGCG---11AY.1000.000046
ORF1ab/nsp16199A199AgcGgcT11AY.1010.00049
ORF1ab/nsp16199A199delGCG---11AY.1020.000027
ORF1ab/nsp16199A199del2GCg--g11AY.1030.000006
ORF1ab/nsp16199A199AgcGgcT11AY.1040.001984
ORF1ab/nsp16199A199delGCG---11AY.1070.000466
ORF1ab/nsp16199A199delGCG---11AY.1180.000063
ORF1ab/nsp16199A199VgCggTg11AY.1190.000035
ORF1ab/nsp16199A199TGcgAcg11AY.1190.000035
ORF1ab/nsp16199A199AgcGgcC11AY.120.20.001285
ORF1ab/nsp16199A199VgCggTg11AY.1210.000135
ORF1ab/nsp16199A199GgCggGg11AY.140.000088
ORF1ab/nsp16199A199AgcGgcC11AY.170.008197
ORF1ab/nsp16199A199delGCG---11AY.190.00114
ORF1ab/nsp16199A199VgCggTg11AY.23.10.000417
ORF1ab/nsp16199A199SGcgTcg11AY.250.000006
ORF1ab/nsp16199A199VgCggTg11AY.29.10.000221
ORF1ab/nsp16199A199VgCggTg11AY.3.10.000085
ORF1ab/nsp16199A199delGCG---11AY.330.000067
ORF1ab/nsp16199A199AgcGgcT11AY.380.000499
ORF1ab/nsp16199A199delGCG---11AY.390.000025
ORF1ab/nsp16199A199VgCggTg11AY.39.10.00004
ORF1ab/nsp16199A199PGcgCcg11AY.40.000002
ORF1ab/nsp16199A199VgCggTg11AY.4.10.000737
ORF1ab/nsp16199A199AgcGgcT11AY.4.30.000842
ORF1ab/nsp16199A199delGCG---11AY.4.50.000107
ORF1ab/nsp16199A199AgcGgcT11AY.410.000294
ORF1ab/nsp16199A199VgCggTg11AY.430.000004
ORF1ab/nsp16199A199TGcgAcg11AY.430.000004
ORF1ab/nsp16199A199del1gCgg-g11AY.440.000006
ORF1ab/nsp16199A199IGCGATC11AY.440.000006
ORF1ab/nsp16199A199TGcgAcg11AY.440.000006
ORF1ab/nsp16199A199AgcGgcC11AY.46.50.000198
ORF1ab/nsp16199A199PGcgCcg11AY.46.60.000072
ORF1ab/nsp16199A199AgcGgcT11AY.480.000465
ORF1ab/nsp16199A199VgCggTg11AY.50.000021
ORF1ab/nsp16199A199delGCG---11AY.540.000095
ORF1ab/nsp16199A199AgcGgcC11AY.550.000917
ORF1ab/nsp16199A199AgcGgcA11AY.560.001605
ORF1ab/nsp16199A199AgcGgcA11AY.580.000907
ORF1ab/nsp16199A199delGCG---11AY.590.00053
ORF1ab/nsp16199A199TGcgAcg11AY.590.00053
ORF1ab/nsp16199A199AgcGgcT11AY.600.000938
ORF1ab/nsp16199A199VgCggTg11AY.610.000105
ORF1ab/nsp16199A199AgcGgcT11AY.630.000387
ORF1ab/nsp16199A199AgcGgcT11AY.660.00107
ORF1ab/nsp16199A199TGcgAcg11AY.670.000464
ORF1ab/nsp16199A199delGCG---11AY.670.000464
ORF1ab/nsp16199A199delGCG---11AY.680.000274
ORF1ab/nsp16199A199AgcGgcC11AY.760.004831
ORF1ab/nsp16199A199delGCG---11AY.840.000437
ORF1ab/nsp16199A199AgcGgcT11AY.850.000427
ORF1ab/nsp16199A199AgcGgcT11AY.880.000884
ORF1ab/nsp16199A199AgcGgcA11AY.890.004902
ORF1ab/nsp16199A199TGcgAcg11AY.9.10.000084
ORF1ab/nsp16199A199VgCggTg11AY.900.000684
ORF1ab/nsp16199A199delGCG---11AY.950.000761
ORF1ab/nsp16199A199delGCG---11AY.990.001049
ORF1ab/nsp16199A199AgcGgcC11AY.990.001049
ORF1ab/nsp16199A199AgcGgcC11AY.99.10.001553
ORF1ab/nsp16199A199TGcgAcg11AZ.50.003509
ORF1ab/nsp16199A199KGCgAAg11B.10.000009
ORF1ab/nsp16199A199del1gcGgc-11B.10.000009
ORF1ab/nsp16199A199KGCgAAg11B.1.10.000018
ORF1ab/nsp16199A199SGcGTcT11B.1.10.000018
ORF1ab/nsp16199A199EgCggAg11B.1.10.000018
ORF1ab/nsp16199A199AgcGgcT11B.1.1.100.001115
ORF1ab/nsp16199A199AgcGgcT11B.1.1.1010.01
ORF1ab/nsp16199A199AgcGgcT11B.1.1.1220.045455
ORF1ab/nsp16199A199AgcGgcC11B.1.1.1610.003534
ORF1ab/nsp16199A199VgCggTg11B.1.1.1740.003378
ORF1ab/nsp16199A199AgcGgcC11B.1.1.1760.000439
ORF1ab/nsp16199A199VgCggTg11B.1.1.1890.001513
ORF1ab/nsp16199A199AgcGgcT11B.1.1.2070.001182
ORF1ab/nsp16199A199delGCG---11B.1.1.2070.001182
ORF1ab/nsp16199A199AgcGgcC11B.1.1.2090.008929
ORF1ab/nsp16199A199VgCggTg11B.1.1.2300.009174
ORF1ab/nsp16199A199AgcGgcT11B.1.1.2370.005405
ORF1ab/nsp16199A199TGcgAcg11B.1.1.250.000569
ORF1ab/nsp16199A199AgcGgcC11B.1.1.2690.001353
ORF1ab/nsp16199A199AgcGgcC11B.1.1.2790.001121
ORF1ab/nsp16199A199SGcgTcg11B.1.1.280.000311
ORF1ab/nsp16199A199AgcGgcT11B.1.1.2910.000742
ORF1ab/nsp16199A199AgcGgcT11B.1.1.2940.001266
ORF1ab/nsp16199A199AgcGgcC11B.1.1.3040.002809
ORF1ab/nsp16199A199AgcGgcT11B.1.1.3160.000925
ORF1ab/nsp16199A199AgcGgcT11B.1.1.3170.000412
ORF1ab/nsp16199A199VgCggTg11B.1.1.330.000421
ORF1ab/nsp16199A199AgcGgcT11B.1.1.3440.010753
ORF1ab/nsp16199A199VgCggTg11B.1.1.3480.000796
ORF1ab/nsp16199A199AgcGgcA11B.1.1.3620.005618
ORF1ab/nsp16199A199AgcGgcC11B.1.1.3720.000689
ORF1ab/nsp16199A199AgcGgcT11B.1.1.3760.005952
ORF1ab/nsp16199A199AgcGgcT11B.1.1.4100.037037
ORF1ab/nsp16199A199TGcgAcg11B.1.1.4340.000349
ORF1ab/nsp16199A199AgcGgcC11B.1.1.440.00241
ORF1ab/nsp16199A199AgcGgcC11B.1.1.4400.011765
ORF1ab/nsp16199A199AgcGgcC11B.1.1.4420.018519
ORF1ab/nsp16199A199AgcGgcT11B.1.1.4480.002033
ORF1ab/nsp16199A199AgcGgcT11B.1.1.4640.001473
ORF1ab/nsp16199A199delGCG---11B.1.1.5170.006803
ORF1ab/nsp16199A199delGCG---11B.1.1.5190.00004
ORF1ab/nsp16199A199AgcGgcT11B.1.1.5230.001563
ORF1ab/nsp16199A199AgcGgcT11B.1.1.5260.003546
ORF1ab/nsp16199A199del1Gcg-cg11B.1.1.70.000001
ORF1ab/nsp16199A199AgcGgcT11B.1.1040.00369
ORF1ab/nsp16199A199delGCG---11B.1.110.30.000718
ORF1ab/nsp16199A199AgcGgcC11B.1.1390.000733
ORF1ab/nsp16199A199EgCggAg11B.1.160.150.00495
ORF1ab/nsp16199A199EgCggAg11B.1.160.300.002976
ORF1ab/nsp16199A199AgcGgcC11B.1.160.90.007194
ORF1ab/nsp16199A199VgCGgTC11B.1.1770.000013
ORF1ab/nsp16199A199delGCG---11B.1.177.500.004695
ORF1ab/nsp16199A199delGCG---11B.1.177.600.000218
ORF1ab/nsp16199A199delGCG---11B.1.177.680.015152
ORF1ab/nsp16199A199VgCggTg11B.1.177.730.000566
ORF1ab/nsp16199A199delGCG---11B.1.1790.003759
ORF1ab/nsp16199A199AgcGgcT11B.1.1790.003759
ORF1ab/nsp16199A199AgcGgcT11B.1.1890.004292
ORF1ab/nsp16199A199AgcGgcC11B.1.1920.009259
ORF1ab/nsp16199A199EgCggAg11B.1.20.000009
ORF1ab/nsp16199A199KGCGAAA11B.1.20.000009
ORF1ab/nsp16199A199VgCggTg11B.1.20.000009
ORF1ab/nsp16199A199SGcgTcg11B.1.20.000009
ORF1ab/nsp16199A199AgcGgcT11B.1.2100.002132
ORF1ab/nsp16199A199AgcGgcT11B.1.2140.003663
ORF1ab/nsp16199A199AgcGgcC11B.1.214.20.0006
ORF1ab/nsp16199A199VgCggTg11B.1.214.20.0006
ORF1ab/nsp16199A199delGCG---11B.1.2180.005155
ORF1ab/nsp16199A199GgCggGg11B.1.2210.000071
ORF1ab/nsp16199A199AgcGgcC11B.1.2220.001692
ORF1ab/nsp16199A199AgcGgcC11B.1.230.006061
ORF1ab/nsp16199A199AgcGgcC11B.1.2330.014085
ORF1ab/nsp16199A199TGcgAcg11B.1.2400.000216
ORF1ab/nsp16199A199delGCG---11B.1.2430.00007
ORF1ab/nsp16199A199AgcGgcC11B.1.2500.014493
ORF1ab/nsp16199A199delGCG---11B.1.2580.000067
ORF1ab/nsp16199A199AgcGgcT11B.1.258.30.001675
ORF1ab/nsp16199A199VgCggTg11B.1.258.30.001675
ORF1ab/nsp16199A199AgcGgcC11B.1.2980.002114
ORF1ab/nsp16199A199AgcGgcC11B.1.3320.003497
ORF1ab/nsp16199A199AgcGgcA11B.1.3490.000715
ORF1ab/nsp16199A199VgCggTg11B.1.3510.00003
ORF1ab/nsp16199A199AgcGgcT11B.1.351.20.000303
ORF1ab/nsp16199A199TGcgAcg11B.1.351.30.000876
ORF1ab/nsp16199A199delGCG---11B.1.360.000146
ORF1ab/nsp16199A199EgCggAg11B.1.360.000146
ORF1ab/nsp16199A199VgCggTg11B.1.360.000146
ORF1ab/nsp16199A199VgCggTg11B.1.36.160.001425
ORF1ab/nsp16199A199AgcGgcT11B.1.36.180.00042
ORF1ab/nsp16199A199AgcGgcC11B.1.36.210.00216
ORF1ab/nsp16199A199AgcGgcT11B.1.36.220.001208
ORF1ab/nsp16199A199SGcgTcg11B.1.3620.001541
ORF1ab/nsp16199A199AgcGgcC11B.1.3620.001541
ORF1ab/nsp16199A199AgcGgcC11B.1.3660.004878
ORF1ab/nsp16199A199VgCggTg11B.1.3670.000792
ORF1ab/nsp16199A199AgcGgcC11B.1.3780.006849
ORF1ab/nsp16199A199GgCggGg11B.1.3960.000706
ORF1ab/nsp16199A199AgcGgcC11B.1.3980.002976
ORF1ab/nsp16199A199AgcGgcT11B.1.3990.001934
ORF1ab/nsp16199A199AgcGgcA11B.1.4000.000429
ORF1ab/nsp16199A199AgcGgcC11B.1.4040.001302
ORF1ab/nsp16199A199delGCG---11B.1.416.10.001563
ORF1ab/nsp16199A199delGCG---11B.1.4270.00005
ORF1ab/nsp16199A199SGcgTcg11B.1.4270.00005
ORF1ab/nsp16199A199TGcgAcg11B.1.4290.000024
ORF1ab/nsp16199A199AgcGgcC11B.1.4320.011236
ORF1ab/nsp16199A199AgcGgcT11B.1.4560.003268
ORF1ab/nsp16199A199AgcGgcC11B.1.4620.007246
ORF1ab/nsp16199A199AgcGgcC11B.1.4660.023256
ORF1ab/nsp16199A199VgCggTg11B.1.466.10.007194
ORF1ab/nsp16199A199AgcGgcA11B.1.4690.00361
ORF1ab/nsp16199A199AgcGgcC11B.1.4800.002488
ORF1ab/nsp16199A199SGcGTcT11B.1.4970.000315
ORF1ab/nsp16199A199AgcGgcC11B.1.4970.000315
ORF1ab/nsp16199A199AgcGgcT11B.1.5270.003704
ORF1ab/nsp16199A199AgcGgcC11B.1.5330.009615
ORF1ab/nsp16199A199delGCG---11B.1.5510.00129
ORF1ab/nsp16199A199AgcGgcA11B.1.5650.00081
ORF1ab/nsp16199A199SGcgTcg11B.1.5680.001111
ORF1ab/nsp16199A199delGCG---11B.1.5750.000303
ORF1ab/nsp16199A199AgcGgcT11B.1.575.10.002439
ORF1ab/nsp16199A199AgcGgcT11B.1.5880.00091
ORF1ab/nsp16199A199AgcGgcC11B.1.5900.004545
ORF1ab/nsp16199A199delGCG---11B.1.5950.000261
ORF1ab/nsp16199A199AgcGgcC11B.1.5990.00365
ORF1ab/nsp16199A199AgcGgcC11B.1.6000.005848
ORF1ab/nsp16199A199AgcGgcC11B.1.6060.006024
ORF1ab/nsp16199A199AgcGgcT11B.1.6100.003546
ORF1ab/nsp16199A199VgCggTg11B.1.617.10.000129
ORF1ab/nsp16199A199delGCG---11B.1.617.10.000129
ORF1ab/nsp16199A199PGcgCcg11B.1.617.20.000004
ORF1ab/nsp16199A199EgCggAg11B.1.617.30.002985
ORF1ab/nsp16199A199AgcGgcA11B.1.617.30.002985
ORF1ab/nsp16199A199delGCG---11B.1.6200.000946
ORF1ab/nsp16199A199AgcGgcC11B.1.6200.000946
ORF1ab/nsp16199A199delGCG---11B.1.6210.000089
ORF1ab/nsp16199A199AgcGgcC11B.1.6270.00202
ORF1ab/nsp16199A199AgcGgcT11B.1.6330.041667
ORF1ab/nsp16199A199AgcGgcA11B.1.9.40.006135
ORF1ab/nsp16199A199delGCG---11B.340.013699
ORF1ab/nsp16199A199VgCggTg11B.60.00091
ORF1ab/nsp16199A199AgcGgcT11B.60.00091
ORF1ab/nsp16199A199VgCggTg11C.1.20.004255
ORF1ab/nsp16199A199AgcGgcC11C.110.010638
ORF1ab/nsp16199A199AgcGgcT11C.140.004329
ORF1ab/nsp16199A199AgcGgcC11C.180.002591
ORF1ab/nsp16199A199AgcGgcC11C.260.007353
ORF1ab/nsp16199A199AgcGgcT11L.30.003546
ORF1ab/nsp16199A199AgcGgcC11N.10.016949
ORF1ab/nsp16199A199VgCggTg11N.40.004255
ORF1ab/nsp16199A199VgCggTg11P.10.000016
ORF1ab/nsp16199A199AgcGgcA11P.1.17.10.000875
ORF1ab/nsp16199A199AgcGgcC11Q.40.000455
ORF1ab/nsp16199A199AgcGgcT11Q.60.006623
ORF1ab/nsp16199A199AgcGgcT11Q.70.001111
ORF1ab/nsp16199A199SGcGTcC11U.10.012821