CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 188 | A188A | A6986A | syn | gcA | gcT | 6901 | 6092 | 0.882771 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188A | A6986A | syn | gcA | gcG | 6901 | 795 | 0.115201 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188A | A6986A | syn | gcA | gcC | 6901 | 14 | 0.00202869 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188S | A6986S | nonsyn | Gca | Tca | 5634 | 5633 | 0.999822 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188S | A6986S | nonsyn | GcA | TcC | 5634 | 1 | 0.000177494 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188V | A6986V | nonsyn | gCa | gTa | 431 | 429 | 0.99536 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188V | A6986V | nonsyn | gCA | gTG | 431 | 2 | 0.00464037 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188T | A6986T | nonsyn | Gca | Aca | 355 | 354 | 0.997183 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188T | A6986T | nonsyn | GcA | AcT | 355 | 1 | 0.0028169 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188del | A6986del | del | GCA | --- | 221 | 221 | 1 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188P | A6986P | nonsyn | Gca | Cca | 11 | 8 | 0.727273 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188P | A6986P | nonsyn | GcA | CcT | 11 | 3 | 0.272727 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188G | A6986G | nonsyn | gCa | gGa | 5 | 5 | 1 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188del1 | A6986del1 | del | GCA | -NN | 4 | 3 | 0.75 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188del1 | A6986del1 | del | gcA | gc- | 4 | 1 | 0.25 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188D | A6986D | nonsyn | gCA | gAT | 3 | 3 | 1 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188E | A6986E | nonsyn | gCa | gAa | 3 | 3 | 1 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188L | A6986L | nonsyn | GCA | CTG | 3 | 2 | 0.666667 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188R | A6986R | nonsyn | GCA | CGG | 3 | 1 | 0.333333 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188R | A6986R | nonsyn | GCa | CGa | 3 | 1 | 0.333333 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188L | A6986L | nonsyn | GCa | TTa | 3 | 1 | 0.333333 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188R | A6986R | nonsyn | GCa | AGa | 3 | 1 | 0.333333 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188K | A6986K | nonsyn | GCa | AAa | 1 | 1 | 1 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188M | A6986M | nonsyn | GCA | ATG | 1 | 1 | 1 | 21220-21222 |
ORF1ab/nsp16 | 188 | A188F | A6986F | nonsyn | GCA | TTC | 1 | 1 | 1 | 21220-21222 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 6092 | 6901 | All | 0.001165 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 795 | 6901 | All | 0.000152 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcC | 14 | 6901 | All | 0.000003 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 5633 | 5634 | All | 0.001077 |
ORF1ab/nsp16 | 188 | A188S | GcA | TcC | 1 | 5634 | All | 0 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 4996 | 4996 | B.1.177.81 | 0.945854 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2328 | 2328 | AY.4 | 0.003623 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 609 | 609 | B.1.1.7 | 0.000545 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 488 | 489 | B.1.177 | 0.006426 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 489 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 429 | 431 | All | 0.000082 |
ORF1ab/nsp16 | 188 | A188V | gCA | gTG | 2 | 431 | All | 0 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 354 | 355 | All | 0.000068 |
ORF1ab/nsp16 | 188 | A188T | GcA | AcT | 1 | 355 | All | 0 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 339 | 339 | Z.1 | 0.979769 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 327 | 327 | AW.1 | 0.996951 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 300 | 300 | AY.44 | 0.001826 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 266 | 266 | B.1.617.2 | 0.001002 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 221 | 221 | All | 0.000042 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 199 | 199 | B.1.177.50 | 0.934272 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 193 | 193 | AY.43 | 0.000855 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 162 | 162 | AY.4 | 0.000252 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 141 | 143 | B.1.617.2 | 0.000531 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcC | 2 | 143 | B.1.617.2 | 0.000008 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 127 | 127 | B.1.177 | 0.001672 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 106 | 106 | B.1.234 | 0.013986 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 96 | 98 | AY.44 | 0.000584 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 2 | 98 | AY.44 | 0.000012 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 93 | 94 | AY.43 | 0.000412 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcC | 1 | 94 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 93 | 93 | B.1.2 | 0.000819 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 86 | 86 | AY.98 | 0.006794 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 83 | 83 | AY.4 | 0.000129 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 81 | 81 | AY.103 | 0.000503 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 77 | 77 | AY.5 | 0.00159 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 71 | 71 | B.1.177.86 | 0.013025 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 68 | 68 | AY.102 | 0.001803 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 63 | 63 | B.1.160 | 0.001965 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 63 | 63 | B.1.404 | 0.082031 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 61 | 61 | AY.44 | 0.000371 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 55 | 55 | B.1.221 | 0.003907 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 53 | 53 | C.35 | 0.041022 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 48 | 48 | B.1.1.372 | 0.033058 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 44 | 44 | B.1 | 0.000403 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 43 | 43 | B.1.311 | 0.011807 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 43 | 43 | B.1.617.2 | 0.000162 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 40 | 40 | B.1.1.7 | 0.000036 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 38 | 38 | AY.4 | 0.000059 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 38 | 38 | B.1.2 | 0.000335 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 36 | 36 | B.1 | 0.00033 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 28 | 35 | B.1.1.7 | 0.000025 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcC | 4 | 35 | B.1.1.7 | 0.000004 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 3 | 35 | B.1.1.7 | 0.000003 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 34 | 34 | B.1.1.7 | 0.00003 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 34 | 34 | B.1.2 | 0.000299 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 29 | 29 | B.1.1.7 | 0.000026 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 28 | 28 | B.1.2 | 0.000247 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 27 | 27 | B.1.426 | 0.027245 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 26 | 26 | AY.34 | 0.002521 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 24 | 24 | AY.46.1 | 0.024641 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 23 | 23 | AY.20 | 0.000894 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 22 | 22 | AY.9 | 0.001487 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 21 | 21 | B.1.609 | 0.010067 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 19 | 19 | AY.39 | 0.00047 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 11 | 19 | B.1 | 0.000101 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 8 | 19 | B.1 | 0.000073 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 19 | 19 | B.1.177.61 | 0.826087 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 18 | 18 | AY.22 | 0.037657 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 18 | 18 | AY.4.2 | 0.00039 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 18 | 18 | P.1.14 | 0.00086 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 17 | 17 | B.1.617.2 | 0.000064 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 16 | 16 | AY.34.1 | 0.008159 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 16 | 16 | B.1.1 | 0.00029 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 15 | 15 | B.1.1.518 | 0.094937 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 15 | 15 | B.1.177.53 | 0.035885 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 15 | 15 | B.1.258 | 0.000998 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 13 | 14 | AY.3 | 0.000129 |
ORF1ab/nsp16 | 188 | A188T | GcA | AcT | 1 | 14 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 14 | 14 | B.1.561 | 0.005558 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 6 | 13 | B.1.1 | 0.000109 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 5 | 13 | B.1.1 | 0.000091 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcC | 2 | 13 | B.1.1 | 0.000036 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 12 | 12 | AY.39.1 | 0.000475 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 12 | 12 | B.1.36.29 | 0.006208 |
ORF1ab/nsp16 | 188 | A188P | Gca | Cca | 8 | 11 | All | 0.000002 |
ORF1ab/nsp16 | 188 | A188P | GcA | CcT | 3 | 11 | All | 0.000001 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 9 | 11 | B.1.2 | 0.000079 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 2 | 11 | B.1.2 | 0.000018 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 7 | 10 | AY.3 | 0.00007 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 3 | 10 | AY.3 | 0.00003 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 10 | 10 | AY.4.5 | 0.001075 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 10 | 10 | B.1.1.464 | 0.014728 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 9 | 9 | AY.76 | 0.043478 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 8 | 9 | AY.9.2 | 0.000294 |
ORF1ab/nsp16 | 188 | A188S | GcA | TcC | 1 | 9 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 9 | 9 | B.1.346 | 0.011796 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 8 | 8 | B.1.1.306 | 0.003507 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 8 | 8 | B.1.1.317 | 0.003294 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 8 | 8 | B.1.177.4 | 0.001688 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 8 | 8 | B.1.480 | 0.0199 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 8 | 8 | B.1.539 | 0.140351 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 6 | 7 | AY.43 | 0.000027 |
ORF1ab/nsp16 | 188 | A188V | gCA | gTG | 1 | 7 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 7 | 7 | B.1.596 | 0.00061 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 7 | 7 | C.27 | 0.12963 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 7 | 7 | Q.7 | 0.007778 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp16 | 188 | A188G | gCa | gGa | 5 | 5 | All | 0.000001 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 4 | 5 | AY.25 | 0.000024 |
ORF1ab/nsp16 | 188 | A188V | gCA | gTG | 1 | 5 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 5 | 5 | B.1.620 | 0.00473 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp16 | 188 | A188del1 | GCA | -NN | 3 | 4 | All | 0.000001 |
ORF1ab/nsp16 | 188 | A188del1 | gcA | gc- | 1 | 4 | All | 0 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 4 | 4 | AY.89 | 0.019608 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp16 | 188 | A188P | GcA | CcT | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 188 | A188P | Gca | Cca | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 4 | 4 | B.1.177.72 | 0.013559 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp16 | 188 | A188D | gCA | gAT | 3 | 3 | All | 0.000001 |
ORF1ab/nsp16 | 188 | A188E | gCa | gAa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp16 | 188 | A188L | GCA | CTG | 2 | 3 | All | 0 |
ORF1ab/nsp16 | 188 | A188R | GCa | AGa | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 188 | A188R | GCA | CGG | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 188 | A188R | GCa | CGa | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 188 | A188L | GCa | TTa | 1 | 3 | All | 0 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 3 | 3 | AY.63 | 0.001161 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 3 | 3 | B.1.1.236 | 0.02069 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 3 | 3 | B.1.1.358 | 0.103448 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 3 | 3 | B.1.177.10 | 0.002634 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 3 | 3 | B.1.36.10 | 0.014354 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 3 | 3 | B.1.524 | 0.004219 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcC | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp16 | 188 | A188L | GCA | CTG | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp16 | 188 | A188P | GcA | CcT | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 188 | A188P | Gca | Cca | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp16 | 188 | A188P | Gca | Cca | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | B.1.1.148 | 0.017544 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 2 | 2 | B.1.142 | 0.005797 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcC | 1 | 2 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | B.1.166 | 0.016949 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 2 | 2 | B.1.177.31 | 0.022989 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 2 | B.1.177.86 | 0.000183 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 2 | B.1.177.86 | 0.000183 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 2 | 2 | P.1.17.1 | 0.00175 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 2 | 2 | U.3 | 0.007722 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp16 | 188 | A188M | GCA | ATG | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 188 | A188K | GCa | AAa | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 188 | A188F | GCA | TTC | 1 | 1 | All | 0 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 188 | A188E | gCa | gAa | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp16 | 188 | A188E | gCa | gAa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp16 | 188 | A188del1 | GCA | -NN | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 188 | A188R | GCa | AGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp16 | 188 | A188E | gCa | gAa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 188 | A188R | GCa | CGa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp16 | 188 | A188D | gCA | gAT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp16 | 188 | A188G | gCa | gGa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 188 | A188L | GCa | TTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 188 | A188F | GCA | TTC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | AZ.2.1 | 0.00813 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 188 | A188D | gCA | gAT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 188 | A188del1 | GCA | -NN | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 188 | A188G | gCa | gGa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.1.118 | 0.010204 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp16 | 188 | A188P | Gca | Cca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp16 | 188 | A188G | gCa | gGa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp16 | 188 | A188P | Gca | Cca | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp16 | 188 | A188G | gCa | gGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 188 | A188del1 | gcA | gc- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.159 | 0.012195 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp16 | 188 | A188P | Gca | Cca | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 188 | A188M | GCA | ATG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.335 | 0.010309 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp16 | 188 | A188G | gCa | gGa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcC | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp16 | 188 | A188K | GCa | AAa | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp16 | 188 | A188R | GCA | CGG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp16 | 188 | A188del | GCA | --- | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.1.9.3 | 0.038462 |
ORF1ab/nsp16 | 188 | A188T | Gca | Aca | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp16 | 188 | A188D | gCA | gAT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp16 | 188 | A188del1 | GCA | -NN | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 188 | A188A | gcA | gcG | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp16 | 188 | A188V | gCa | gTa | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp16 | 188 | A188S | Gca | Tca | 1 | 1 | U.1 | 0.012821 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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