CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 188

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16188A188AA6986AsyngcAgcT690160920.88277121220-21222
ORF1ab/nsp16188A188AA6986AsyngcAgcG69017950.11520121220-21222
ORF1ab/nsp16188A188AA6986AsyngcAgcC6901140.0020286921220-21222
ORF1ab/nsp16188A188SA6986SnonsynGcaTca563456330.99982221220-21222
ORF1ab/nsp16188A188SA6986SnonsynGcATcC563410.00017749421220-21222
ORF1ab/nsp16188A188VA6986VnonsyngCagTa4314290.9953621220-21222
ORF1ab/nsp16188A188VA6986VnonsyngCAgTG43120.0046403721220-21222
ORF1ab/nsp16188A188TA6986TnonsynGcaAca3553540.99718321220-21222
ORF1ab/nsp16188A188TA6986TnonsynGcAAcT35510.002816921220-21222
ORF1ab/nsp16188A188delA6986deldelGCA---221221121220-21222
ORF1ab/nsp16188A188PA6986PnonsynGcaCca1180.72727321220-21222
ORF1ab/nsp16188A188PA6986PnonsynGcACcT1130.27272721220-21222
ORF1ab/nsp16188A188GA6986GnonsyngCagGa55121220-21222
ORF1ab/nsp16188A188del1A6986del1delGCA-NN430.7521220-21222
ORF1ab/nsp16188A188del1A6986del1delgcAgc-410.2521220-21222
ORF1ab/nsp16188A188DA6986DnonsyngCAgAT33121220-21222
ORF1ab/nsp16188A188EA6986EnonsyngCagAa33121220-21222
ORF1ab/nsp16188A188LA6986LnonsynGCACTG320.66666721220-21222
ORF1ab/nsp16188A188RA6986RnonsynGCACGG310.33333321220-21222
ORF1ab/nsp16188A188RA6986RnonsynGCaCGa310.33333321220-21222
ORF1ab/nsp16188A188LA6986LnonsynGCaTTa310.33333321220-21222
ORF1ab/nsp16188A188RA6986RnonsynGCaAGa310.33333321220-21222
ORF1ab/nsp16188A188KA6986KnonsynGCaAAa11121220-21222
ORF1ab/nsp16188A188MA6986MnonsynGCAATG11121220-21222
ORF1ab/nsp16188A188FA6986FnonsynGCATTC11121220-21222

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16188A188AgcAgcT60926901All0.001165
ORF1ab/nsp16188A188AgcAgcG7956901All0.000152
ORF1ab/nsp16188A188AgcAgcC146901All0.000003
ORF1ab/nsp16188A188SGcaTca56335634All0.001077
ORF1ab/nsp16188A188SGcATcC15634All0
ORF1ab/nsp16188A188AgcAgcT49964996B.1.177.810.945854
ORF1ab/nsp16188A188SGcaTca23282328AY.40.003623
ORF1ab/nsp16188A188SGcaTca609609B.1.1.70.000545
ORF1ab/nsp16188A188AgcAgcT488489B.1.1770.006426
ORF1ab/nsp16188A188AgcAgcG1489B.1.1770.000013
ORF1ab/nsp16188A188VgCagTa429431All0.000082
ORF1ab/nsp16188A188VgCAgTG2431All0
ORF1ab/nsp16188A188TGcaAca354355All0.000068
ORF1ab/nsp16188A188TGcAAcT1355All0
ORF1ab/nsp16188A188AgcAgcT339339Z.10.979769
ORF1ab/nsp16188A188SGcaTca327327AW.10.996951
ORF1ab/nsp16188A188SGcaTca300300AY.440.001826
ORF1ab/nsp16188A188SGcaTca266266B.1.617.20.001002
ORF1ab/nsp16188A188delGCA---221221All0.000042
ORF1ab/nsp16188A188AgcAgcT199199B.1.177.500.934272
ORF1ab/nsp16188A188SGcaTca193193AY.430.000855
ORF1ab/nsp16188A188AgcAgcG162162AY.40.000252
ORF1ab/nsp16188A188AgcAgcG141143B.1.617.20.000531
ORF1ab/nsp16188A188AgcAgcC2143B.1.617.20.000008
ORF1ab/nsp16188A188SGcaTca127127B.1.1770.001672
ORF1ab/nsp16188A188AgcAgcG106106B.1.2340.013986
ORF1ab/nsp16188A188AgcAgcG9698AY.440.000584
ORF1ab/nsp16188A188AgcAgcT298AY.440.000012
ORF1ab/nsp16188A188AgcAgcG9394AY.430.000412
ORF1ab/nsp16188A188AgcAgcC194AY.430.000004
ORF1ab/nsp16188A188SGcaTca9393B.1.20.000819
ORF1ab/nsp16188A188SGcaTca8686AY.980.006794
ORF1ab/nsp16188A188TGcaAca8383AY.40.000129
ORF1ab/nsp16188A188SGcaTca8181AY.1030.000503
ORF1ab/nsp16188A188SGcaTca7777AY.50.00159
ORF1ab/nsp16188A188SGcaTca7171B.1.177.860.013025
ORF1ab/nsp16188A188SGcaTca6868AY.1020.001803
ORF1ab/nsp16188A188SGcaTca6363B.1.1600.001965
ORF1ab/nsp16188A188SGcaTca6363B.1.4040.082031
ORF1ab/nsp16188A188VgCagTa6161AY.440.000371
ORF1ab/nsp16188A188SGcaTca5555B.1.2210.003907
ORF1ab/nsp16188A188SGcaTca5353C.350.041022
ORF1ab/nsp16188A188SGcaTca4848B.1.1.3720.033058
ORF1ab/nsp16188A188SGcaTca4444B.10.000403
ORF1ab/nsp16188A188SGcaTca4343B.1.3110.011807
ORF1ab/nsp16188A188VgCagTa4343B.1.617.20.000162
ORF1ab/nsp16188A188VgCagTa4040B.1.1.70.000036
ORF1ab/nsp16188A188VgCagTa3838AY.40.000059
ORF1ab/nsp16188A188delGCA---3838B.1.20.000335
ORF1ab/nsp16188A188VgCagTa3636B.10.00033
ORF1ab/nsp16188A188AgcAgcG2835B.1.1.70.000025
ORF1ab/nsp16188A188AgcAgcC435B.1.1.70.000004
ORF1ab/nsp16188A188AgcAgcT335B.1.1.70.000003
ORF1ab/nsp16188A188TGcaAca3434B.1.1.70.00003
ORF1ab/nsp16188A188TGcaAca3434B.1.20.000299
ORF1ab/nsp16188A188delGCA---2929B.1.1.70.000026
ORF1ab/nsp16188A188VgCagTa2828B.1.20.000247
ORF1ab/nsp16188A188VgCagTa2727B.1.4260.027245
ORF1ab/nsp16188A188SGcaTca2626AY.340.002521
ORF1ab/nsp16188A188SGcaTca2424AY.46.10.024641
ORF1ab/nsp16188A188SGcaTca2323AY.200.000894
ORF1ab/nsp16188A188SGcaTca2222AY.90.001487
ORF1ab/nsp16188A188TGcaAca2121B.1.6090.010067
ORF1ab/nsp16188A188SGcaTca1919AY.250.000114
ORF1ab/nsp16188A188SGcaTca1919AY.390.00047
ORF1ab/nsp16188A188AgcAgcT1119B.10.000101
ORF1ab/nsp16188A188AgcAgcG819B.10.000073
ORF1ab/nsp16188A188SGcaTca1919B.1.177.610.826087
ORF1ab/nsp16188A188SGcaTca1818AY.220.037657
ORF1ab/nsp16188A188SGcaTca1818AY.4.20.00039
ORF1ab/nsp16188A188TGcaAca1818P.1.140.00086
ORF1ab/nsp16188A188TGcaAca1717B.1.617.20.000064
ORF1ab/nsp16188A188SGcaTca1616AY.290.000252
ORF1ab/nsp16188A188AgcAgcG1616AY.34.10.008159
ORF1ab/nsp16188A188SGcaTca1616B.1.10.00029
ORF1ab/nsp16188A188TGcaAca1515B.1.1.5180.094937
ORF1ab/nsp16188A188SGcaTca1515B.1.177.530.035885
ORF1ab/nsp16188A188SGcaTca1515B.1.2580.000998
ORF1ab/nsp16188A188TGcaAca1314AY.30.000129
ORF1ab/nsp16188A188TGcAAcT114AY.30.00001
ORF1ab/nsp16188A188delGCA---1414AY.430.000062
ORF1ab/nsp16188A188AgcAgcG1414B.1.5610.005558
ORF1ab/nsp16188A188AgcAgcG1313AY.390.000321
ORF1ab/nsp16188A188AgcAgcT613B.1.10.000109
ORF1ab/nsp16188A188AgcAgcG513B.1.10.000091
ORF1ab/nsp16188A188AgcAgcC213B.1.10.000036
ORF1ab/nsp16188A188SGcaTca1313P.10.000205
ORF1ab/nsp16188A188SGcaTca1212AY.39.10.000475
ORF1ab/nsp16188A188SGcaTca1212B.1.3510.000357
ORF1ab/nsp16188A188SGcaTca1212B.1.36.290.006208
ORF1ab/nsp16188A188PGcaCca811All0.000002
ORF1ab/nsp16188A188PGcACcT311All0.000001
ORF1ab/nsp16188A188delGCA---1111B.10.000101
ORF1ab/nsp16188A188SGcaTca1111B.1.1.5190.000437
ORF1ab/nsp16188A188AgcAgcT911B.1.20.000079
ORF1ab/nsp16188A188AgcAgcG211B.1.20.000018
ORF1ab/nsp16188A188AgcAgcG710AY.30.00007
ORF1ab/nsp16188A188AgcAgcT310AY.30.00003
ORF1ab/nsp16188A188SGcaTca1010AY.4.50.001075
ORF1ab/nsp16188A188TGcaAca1010AY.430.000044
ORF1ab/nsp16188A188delGCA---1010AY.440.000061
ORF1ab/nsp16188A188AgcAgcG1010AY.750.00056
ORF1ab/nsp16188A188SGcaTca1010B.1.1.4640.014728
ORF1ab/nsp16188A188VgCagTa1010B.1.1770.000132
ORF1ab/nsp16188A188delGCA---1010B.1.617.20.000038
ORF1ab/nsp16188A188AgcAgcG99AY.1030.000056
ORF1ab/nsp16188A188SGcaTca99AY.30.00009
ORF1ab/nsp16188A188SGcaTca99AY.760.043478
ORF1ab/nsp16188A188SGcaTca89AY.9.20.000294
ORF1ab/nsp16188A188SGcATcC19AY.9.20.000037
ORF1ab/nsp16188A188VgCagTa99B.1.10.000163
ORF1ab/nsp16188A188SGcaTca99B.1.3460.011796
ORF1ab/nsp16188A188TGcaAca88AY.1020.000212
ORF1ab/nsp16188A188VgCagTa88AY.1180.000501
ORF1ab/nsp16188A188TGcaAca88B.10.000073
ORF1ab/nsp16188A188SGcaTca88B.1.1.3060.003507
ORF1ab/nsp16188A188SGcaTca88B.1.1.3170.003294
ORF1ab/nsp16188A188SGcaTca88B.1.177.40.001688
ORF1ab/nsp16188A188SGcaTca88B.1.2430.000557
ORF1ab/nsp16188A188TGcaAca88B.1.3510.000238
ORF1ab/nsp16188A188SGcaTca88B.1.4800.0199
ORF1ab/nsp16188A188AgcAgcG88B.1.5390.140351
ORF1ab/nsp16188A188delGCA---88P.10.000126
ORF1ab/nsp16188A188delGCA---77AY.250.000042
ORF1ab/nsp16188A188SGcaTca77AY.330.000467
ORF1ab/nsp16188A188VgCagTa67AY.430.000027
ORF1ab/nsp16188A188VgCAgTG17AY.430.000004
ORF1ab/nsp16188A188VgCagTa77AY.460.000729
ORF1ab/nsp16188A188SGcaTca77B.1.360.001021
ORF1ab/nsp16188A188delGCA---77B.1.5960.00061
ORF1ab/nsp16188A188SGcaTca77C.270.12963
ORF1ab/nsp16188A188SGcaTca77P.20.001306
ORF1ab/nsp16188A188AgcAgcG77Q.70.007778
ORF1ab/nsp16188A188SGcaTca66AY.1000.000276
ORF1ab/nsp16188A188TGcaAca66AY.250.000036
ORF1ab/nsp16188A188AgcAgcG66AY.250.000036
ORF1ab/nsp16188A188SGcaTca66AY.260.00017
ORF1ab/nsp16188A188AgcAgcG66B.1.5250.000679
ORF1ab/nsp16188A188SGcaTca66D.20.00045
ORF1ab/nsp16188A188SGcaTca66R.10.00054
ORF1ab/nsp16188A188GgCagGa55All0.000001
ORF1ab/nsp16188A188VgCagTa45AY.250.000024
ORF1ab/nsp16188A188VgCAgTG15AY.250.000006
ORF1ab/nsp16188A188SGcaTca55AY.540.000477
ORF1ab/nsp16188A188SGcaTca55AY.60.000206
ORF1ab/nsp16188A188TGcaAca55B.1.10.000091
ORF1ab/nsp16188A188VgCagTa55B.1.1.4340.001743
ORF1ab/nsp16188A188VgCagTa55B.1.2210.000355
ORF1ab/nsp16188A188TGcaAca55B.1.2430.000348
ORF1ab/nsp16188A188delGCA---55B.1.3510.000149
ORF1ab/nsp16188A188delGCA---55B.1.5260.000118
ORF1ab/nsp16188A188SGcaTca55B.1.6200.00473
ORF1ab/nsp16188A188TGcaAca55P.10.000079
ORF1ab/nsp16188A188del1GCA-NN34All0.000001
ORF1ab/nsp16188A188del1gcAgc-14All0
ORF1ab/nsp16188A188VgCagTa44AY.1030.000025
ORF1ab/nsp16188A188SGcaTca44AY.1060.00134
ORF1ab/nsp16188A188SGcaTca44AY.1180.000251
ORF1ab/nsp16188A188VgCagTa44AY.1210.000541
ORF1ab/nsp16188A188SGcaTca44AY.230.000279
ORF1ab/nsp16188A188SGcaTca44AY.360.000593
ORF1ab/nsp16188A188TGcaAca44AY.450.000487
ORF1ab/nsp16188A188SGcaTca44AY.450.000487
ORF1ab/nsp16188A188SGcaTca44AY.460.000416
ORF1ab/nsp16188A188SGcaTca44AY.46.60.000289
ORF1ab/nsp16188A188TGcaAca44AY.470.000124
ORF1ab/nsp16188A188SGcaTca44AY.700.000834
ORF1ab/nsp16188A188SGcaTca44AY.850.001709
ORF1ab/nsp16188A188SGcaTca44AY.890.019608
ORF1ab/nsp16188A188VgCagTa44AY.98.10.000194
ORF1ab/nsp16188A188delGCA---44B.1.10.000073
ORF1ab/nsp16188A188PGcACcT24B.1.1.70.000002
ORF1ab/nsp16188A188PGcaCca24B.1.1.70.000002
ORF1ab/nsp16188A188AgcAgcT44B.1.177.720.013559
ORF1ab/nsp16188A188VgCagTa44B.1.2430.000278
ORF1ab/nsp16188A188delGCA---44B.1.5250.000453
ORF1ab/nsp16188A188VgCagTa44P.10.000063
ORF1ab/nsp16188A188delGCA---44P.1.150.000929
ORF1ab/nsp16188A188DgCAgAT33All0.000001
ORF1ab/nsp16188A188EgCagAa33All0.000001
ORF1ab/nsp16188A188LGCACTG23All0
ORF1ab/nsp16188A188RGCaAGa13All0
ORF1ab/nsp16188A188RGCACGG13All0
ORF1ab/nsp16188A188RGCaCGa13All0
ORF1ab/nsp16188A188LGCaTTa13All0
ORF1ab/nsp16188A188AgcAgcT33AY.1170.000254
ORF1ab/nsp16188A188SGcaTca33AY.1210.000406
ORF1ab/nsp16188A188SGcaTca33AY.20.001068
ORF1ab/nsp16188A188AgcAgcG33AY.230.000209
ORF1ab/nsp16188A188VgCagTa33AY.30.00003
ORF1ab/nsp16188A188SGcaTca33AY.300.001187
ORF1ab/nsp16188A188AgcAgcT33AY.330.0002
ORF1ab/nsp16188A188delGCA---33AY.40.000005
ORF1ab/nsp16188A188AgcAgcG33AY.4.20.000065
ORF1ab/nsp16188A188SGcaTca33AY.420.000121
ORF1ab/nsp16188A188SGcaTca33AY.530.000863
ORF1ab/nsp16188A188SGcaTca33AY.630.001161
ORF1ab/nsp16188A188AgcAgcG33AY.770.003382
ORF1ab/nsp16188A188TGcaAca33AY.850.001282
ORF1ab/nsp16188A188SGcaTca33AY.920.000862
ORF1ab/nsp16188A188AgcAgcT33B0.000383
ORF1ab/nsp16188A188SGcaTca33B.1.1.2160.002671
ORF1ab/nsp16188A188SGcaTca33B.1.1.2360.02069
ORF1ab/nsp16188A188VgCagTa33B.1.1.3580.103448
ORF1ab/nsp16188A188VgCagTa33B.1.1600.000094
ORF1ab/nsp16188A188VgCagTa33B.1.177.100.002634
ORF1ab/nsp16188A188AgcAgcG33B.1.2580.0002
ORF1ab/nsp16188A188TGcaAca33B.1.2580.0002
ORF1ab/nsp16188A188SGcaTca33B.1.36.100.014354
ORF1ab/nsp16188A188AgcAgcG33B.1.4290.000071
ORF1ab/nsp16188A188delGCA---33B.1.4290.000071
ORF1ab/nsp16188A188AgcAgcG33B.1.5240.004219
ORF1ab/nsp16188A188SGcaTca33B.1.5260.000071
ORF1ab/nsp16188A188delGCA---33B.1.6210.000266
ORF1ab/nsp16188A188delGCA---33C.370.000348
ORF1ab/nsp16188A188AgcAgcT13P.10.000016
ORF1ab/nsp16188A188AgcAgcG13P.10.000016
ORF1ab/nsp16188A188AgcAgcC13P.10.000016
ORF1ab/nsp16188A188LGCACTG220.111111
ORF1ab/nsp16188A188delGCA---220.111111
ORF1ab/nsp16188A188SGcaTca22AY.10.000791
ORF1ab/nsp16188A188TGcaAca22AY.1030.000012
ORF1ab/nsp16188A188delGCA---22AY.1180.000125
ORF1ab/nsp16188A188TGcaAca22AY.1190.000071
ORF1ab/nsp16188A188AgcAgcT22AY.1200.000074
ORF1ab/nsp16188A188PGcACcT12AY.30.00001
ORF1ab/nsp16188A188PGcaCca12AY.30.00001
ORF1ab/nsp16188A188delGCA---22AY.34.10.00102
ORF1ab/nsp16188A188VgCagTa22AY.390.000049
ORF1ab/nsp16188A188AgcAgcG22AY.4.50.000215
ORF1ab/nsp16188A188SGcaTca22AY.46.20.001271
ORF1ab/nsp16188A188SGcaTca22AY.470.000062
ORF1ab/nsp16188A188SGcaTca22AY.610.00021
ORF1ab/nsp16188A188delGCA---22AY.680.000547
ORF1ab/nsp16188A188VgCagTa22AY.750.000112
ORF1ab/nsp16188A188SGcaTca22AY.780.003082
ORF1ab/nsp16188A188SGcaTca22AY.98.10.000097
ORF1ab/nsp16188A188delGCA---22AY.990.002099
ORF1ab/nsp16188A188SGcaTca22AZ.20.001642
ORF1ab/nsp16188A188PGcaCca22B.10.000018
ORF1ab/nsp16188A188SGcaTca22B.1.1.1480.017544
ORF1ab/nsp16188A188delGCA---22B.1.1.1740.006757
ORF1ab/nsp16188A188TGcaAca22B.1.1.1760.000879
ORF1ab/nsp16188A188SGcaTca22B.1.1.1980.002937
ORF1ab/nsp16188A188SGcaTca22B.1.1.2220.000408
ORF1ab/nsp16188A188SGcaTca22B.1.1.4320.002532
ORF1ab/nsp16188A188VgCagTa22B.1.1.630.000772
ORF1ab/nsp16188A188SGcaTca22B.1.110.30.001437
ORF1ab/nsp16188A188AgcAgcG22B.1.1420.005797
ORF1ab/nsp16188A188AgcAgcT12B.1.1600.000031
ORF1ab/nsp16188A188AgcAgcC12B.1.1600.000031
ORF1ab/nsp16188A188SGcaTca22B.1.1660.016949
ORF1ab/nsp16188A188delGCA---22B.1.1770.000026
ORF1ab/nsp16188A188AgcAgcT22B.1.177.310.022989
ORF1ab/nsp16188A188VgCagTa22B.1.177.560.001335
ORF1ab/nsp16188A188VgCagTa22B.1.177.570.000562
ORF1ab/nsp16188A188SGcaTca22B.1.177.730.001133
ORF1ab/nsp16188A188AgcAgcT12B.1.177.860.000183
ORF1ab/nsp16188A188AgcAgcG12B.1.177.860.000183
ORF1ab/nsp16188A188TGcaAca22B.1.2210.000142
ORF1ab/nsp16188A188TGcaAca22B.1.2340.000264
ORF1ab/nsp16188A188delGCA---22B.1.2430.000139
ORF1ab/nsp16188A188delGCA---22B.1.2580.000133
ORF1ab/nsp16188A188TGcaAca22B.1.4040.002604
ORF1ab/nsp16188A188TGcaAca22B.1.4290.000047
ORF1ab/nsp16188A188SGcaTca22B.1.4290.000047
ORF1ab/nsp16188A188VgCagTa22B.1.5090.001732
ORF1ab/nsp16188A188VgCagTa22B.1.5510.002581
ORF1ab/nsp16188A188SGcaTca22B.1.617.10.000258
ORF1ab/nsp16188A188TGcaAca22B.60.00182
ORF1ab/nsp16188A188AgcAgcG22C.370.000232
ORF1ab/nsp16188A188VgCagTa22D.20.00015
ORF1ab/nsp16188A188SGcaTca22P.1.140.000096
ORF1ab/nsp16188A188SGcaTca22P.1.17.10.00175
ORF1ab/nsp16188A188delGCA---22P.1.70.000639
ORF1ab/nsp16188A188AgcAgcG22P.20.000373
ORF1ab/nsp16188A188VgCagTa22U.30.007722
ORF1ab/nsp16188A188SGcaTca11A.2.50.000499
ORF1ab/nsp16188A188TGcaAca11A.23.10.000704
ORF1ab/nsp16188A188SGcaTca11A.23.10.000704
ORF1ab/nsp16188A188SGcaTca11A.250.018182
ORF1ab/nsp16188A188SGcaTca11AL.10.012987
ORF1ab/nsp16188A188MGCAATG11All0
ORF1ab/nsp16188A188KGCaAAa11All0
ORF1ab/nsp16188A188FGCATTC11All0
ORF1ab/nsp16188A188TGcaAca11AU.20.002421
ORF1ab/nsp16188A188delGCA---11AV.10.005051
ORF1ab/nsp16188A188VgCagTa11AY.100.00053
ORF1ab/nsp16188A188delGCA---11AY.1000.000046
ORF1ab/nsp16188A188delGCA---11AY.1020.000027
ORF1ab/nsp16188A188SGcaTca11AY.1050.000643
ORF1ab/nsp16188A188delGCA---11AY.1070.000466
ORF1ab/nsp16188A188VgCagTa11AY.1100.000113
ORF1ab/nsp16188A188delGCA---11AY.1100.000113
ORF1ab/nsp16188A188SGcaTca11AY.1100.000113
ORF1ab/nsp16188A188AgcAgcG11AY.1130.000142
ORF1ab/nsp16188A188SGcaTca11AY.1140.000231
ORF1ab/nsp16188A188TGcaAca11AY.1140.000231
ORF1ab/nsp16188A188VgCagTa11AY.1140.000231
ORF1ab/nsp16188A188SGcaTca11AY.116.10.000311
ORF1ab/nsp16188A188TGcaAca11AY.1170.000085
ORF1ab/nsp16188A188delGCA---11AY.1190.000035
ORF1ab/nsp16188A188AgcAgcG11AY.1190.000035
ORF1ab/nsp16188A188SGcaTca11AY.1190.000035
ORF1ab/nsp16188A188VgCagTa11AY.120.000316
ORF1ab/nsp16188A188SGcaTca11AY.1200.000037
ORF1ab/nsp16188A188TGcaAca11AY.1200.000037
ORF1ab/nsp16188A188AgcAgcG11AY.1210.000135
ORF1ab/nsp16188A188SGcaTca11AY.140.000088
ORF1ab/nsp16188A188VgCagTa11AY.160.00038
ORF1ab/nsp16188A188delGCA---11AY.190.00114
ORF1ab/nsp16188A188VgCagTa11AY.200.000039
ORF1ab/nsp16188A188VgCagTa11AY.230.00007
ORF1ab/nsp16188A188delGCA---11AY.230.00007
ORF1ab/nsp16188A188EgCagAa11AY.23.10.000417
ORF1ab/nsp16188A188SGcaTca11AY.240.000431
ORF1ab/nsp16188A188EgCagAa11AY.250.000006
ORF1ab/nsp16188A188VgCagTa11AY.260.000028
ORF1ab/nsp16188A188AgcAgcT11AY.270.000065
ORF1ab/nsp16188A188AgcAgcG11AY.290.000016
ORF1ab/nsp16188A188TGcaAca11AY.290.000016
ORF1ab/nsp16188A188delGCA---11AY.30.00001
ORF1ab/nsp16188A188SGcaTca11AY.3.10.000085
ORF1ab/nsp16188A188AgcAgcG11AY.300.000396
ORF1ab/nsp16188A188TGcaAca11AY.320.000532
ORF1ab/nsp16188A188delGCA---11AY.330.000067
ORF1ab/nsp16188A188TGcaAca11AY.330.000067
ORF1ab/nsp16188A188del1GCA-NN11AY.34.10.00051
ORF1ab/nsp16188A188VgCagTa11AY.34.10.00051
ORF1ab/nsp16188A188delGCA---11AY.390.000025
ORF1ab/nsp16188A188AgcAgcC11AY.39.10.00004
ORF1ab/nsp16188A188SGcaTca11AY.39.1.10.000725
ORF1ab/nsp16188A188SGcaTca11AY.4.30.000842
ORF1ab/nsp16188A188SGcaTca11AY.4.40.000409
ORF1ab/nsp16188A188delGCA---11AY.4.50.000107
ORF1ab/nsp16188A188VgCagTa11AY.410.000294
ORF1ab/nsp16188A188VgCagTa11AY.420.00004
ORF1ab/nsp16188A188RGCaAGa11AY.430.000004
ORF1ab/nsp16188A188EgCagAa11AY.440.000006
ORF1ab/nsp16188A188RGCaCGa11AY.440.000006
ORF1ab/nsp16188A188TGcaAca11AY.440.000006
ORF1ab/nsp16188A188TGcaAca11AY.460.000104
ORF1ab/nsp16188A188VgCagTa11AY.46.10.001027
ORF1ab/nsp16188A188SGcaTca11AY.46.50.000198
ORF1ab/nsp16188A188VgCagTa11AY.46.60.000072
ORF1ab/nsp16188A188AgcAgcG11AY.470.000031
ORF1ab/nsp16188A188VgCagTa11AY.50.000021
ORF1ab/nsp16188A188AgcAgcG11AY.50.000021
ORF1ab/nsp16188A188TGcaAca11AY.5.30.000337
ORF1ab/nsp16188A188AgcAgcG11AY.5.40.000277
ORF1ab/nsp16188A188delGCA---11AY.540.000095
ORF1ab/nsp16188A188delGCA---11AY.590.00053
ORF1ab/nsp16188A188SGcaTca11AY.590.00053
ORF1ab/nsp16188A188TGcaAca11AY.610.000105
ORF1ab/nsp16188A188TGcaAca11AY.630.000387
ORF1ab/nsp16188A188VgCagTa11AY.650.000533
ORF1ab/nsp16188A188delGCA---11AY.670.000464
ORF1ab/nsp16188A188VgCagTa11AY.690.000187
ORF1ab/nsp16188A188SGcaTca11AY.7.10.000113
ORF1ab/nsp16188A188VgCagTa11AY.700.000209
ORF1ab/nsp16188A188AgcAgcG11AY.740.000116
ORF1ab/nsp16188A188SGcaTca11AY.750.000056
ORF1ab/nsp16188A188DgCAgAT11AY.840.000437
ORF1ab/nsp16188A188GgCagGa11AY.9.10.000084
ORF1ab/nsp16188A188TGcaAca11AY.9.20.000037
ORF1ab/nsp16188A188LGCaTTa11AY.9.20.000037
ORF1ab/nsp16188A188FGCATTC11AY.9.20.000037
ORF1ab/nsp16188A188AgcAgcG11AY.9.20.000037
ORF1ab/nsp16188A188VgCagTa11AY.920.000287
ORF1ab/nsp16188A188AgcAgcG11AY.920.000287
ORF1ab/nsp16188A188TGcaAca11AY.930.000273
ORF1ab/nsp16188A188delGCA---11AY.950.000761
ORF1ab/nsp16188A188VgCagTa11AY.980.000079
ORF1ab/nsp16188A188TGcaAca11AY.98.10.000048
ORF1ab/nsp16188A188AgcAgcG11AY.99.20.000092
ORF1ab/nsp16188A188SGcaTca11AY.99.20.000092
ORF1ab/nsp16188A188VgCagTa11AZ.20.000821
ORF1ab/nsp16188A188VgCagTa11AZ.2.10.00813
ORF1ab/nsp16188A188SGcaTca11B0.000128
ORF1ab/nsp16188A188DgCAgAT11B0.000128
ORF1ab/nsp16188A188del1GCA-NN11B.10.000009
ORF1ab/nsp16188A188GgCagGa11B.10.000009
ORF1ab/nsp16188A188TGcaAca11B.1.1.1010.01
ORF1ab/nsp16188A188VgCagTa11B.1.1.1180.010204
ORF1ab/nsp16188A188TGcaAca11B.1.1.1420.017544
ORF1ab/nsp16188A188SGcaTca11B.1.1.1700.001247
ORF1ab/nsp16188A188AgcAgcG11B.1.1.1940.00495
ORF1ab/nsp16188A188VgCagTa11B.1.1.1980.001468
ORF1ab/nsp16188A188delGCA---11B.1.1.2070.001182
ORF1ab/nsp16188A188SGcaTca11B.1.1.2140.000055
ORF1ab/nsp16188A188VgCagTa11B.1.1.2140.000055
ORF1ab/nsp16188A188AgcAgcT11B.1.1.2220.000204
ORF1ab/nsp16188A188TGcaAca11B.1.1.2220.000204
ORF1ab/nsp16188A188VgCagTa11B.1.1.2360.006897
ORF1ab/nsp16188A188SGcaTca11B.1.1.250.000569
ORF1ab/nsp16188A188VgCagTa11B.1.1.280.000311
ORF1ab/nsp16188A188SGcaTca11B.1.1.2860.002899
ORF1ab/nsp16188A188VgCagTa11B.1.1.2890.002083
ORF1ab/nsp16188A188PGcaCca11B.1.1.3060.000438
ORF1ab/nsp16188A188TGcaAca11B.1.1.3060.000438
ORF1ab/nsp16188A188VgCagTa11B.1.1.3170.000412
ORF1ab/nsp16188A188AgcAgcG11B.1.1.330.000421
ORF1ab/nsp16188A188TGcaAca11B.1.1.330.000421
ORF1ab/nsp16188A188AgcAgcT11B.1.1.3720.000689
ORF1ab/nsp16188A188VgCagTa11B.1.1.3720.000689
ORF1ab/nsp16188A188TGcaAca11B.1.1.3770.001381
ORF1ab/nsp16188A188VgCagTa11B.1.1.3850.004464
ORF1ab/nsp16188A188GgCagGa11B.1.1.4090.002833
ORF1ab/nsp16188A188AgcAgcG11B.1.1.4110.014706
ORF1ab/nsp16188A188VgCagTa11B.1.1.4160.000905
ORF1ab/nsp16188A188VgCagTa11B.1.1.4480.002033
ORF1ab/nsp16188A188PGcaCca11B.1.1.4640.001473
ORF1ab/nsp16188A188delGCA---11B.1.1.5170.006803
ORF1ab/nsp16188A188TGcaAca11B.1.1.5190.00004
ORF1ab/nsp16188A188delGCA---11B.1.1.5190.00004
ORF1ab/nsp16188A188AgcAgcG11B.1.1.5230.001563
ORF1ab/nsp16188A188GgCagGa11B.1.1.70.000001
ORF1ab/nsp16188A188del1gcAgc-11B.1.1.70.000001
ORF1ab/nsp16188A188AgcAgcG11B.1.1.700.000341
ORF1ab/nsp16188A188SGcaTca11B.1.1.700.000341
ORF1ab/nsp16188A188delGCA---11B.1.110.30.000718
ORF1ab/nsp16188A188SGcaTca11B.1.1190.010526
ORF1ab/nsp16188A188VgCagTa11B.1.1430.021277
ORF1ab/nsp16188A188SGcaTca11B.1.1590.012195
ORF1ab/nsp16188A188TGcaAca11B.1.1600.000031
ORF1ab/nsp16188A188TGcaAca11B.1.1770.000013
ORF1ab/nsp16188A188VgCagTa11B.1.177.120.000152
ORF1ab/nsp16188A188VgCagTa11B.1.177.170.000821
ORF1ab/nsp16188A188AgcAgcG11B.1.177.210.000076
ORF1ab/nsp16188A188AgcAgcT11B.1.177.350.000691
ORF1ab/nsp16188A188AgcAgcG11B.1.177.40.000211
ORF1ab/nsp16188A188SGcaTca11B.1.177.430.001477
ORF1ab/nsp16188A188delGCA---11B.1.177.500.004695
ORF1ab/nsp16188A188delGCA---11B.1.177.600.000218
ORF1ab/nsp16188A188TGcaAca11B.1.177.650.000665
ORF1ab/nsp16188A188AgcAgcT11B.1.177.650.000665
ORF1ab/nsp16188A188delGCA---11B.1.177.680.015152
ORF1ab/nsp16188A188SGcaTca11B.1.177.70.000165
ORF1ab/nsp16188A188VgCagTa11B.1.177.750.001041
ORF1ab/nsp16188A188AgcAgcT11B.1.177.750.001041
ORF1ab/nsp16188A188AgcAgcT11B.1.177.760.002494
ORF1ab/nsp16188A188SGcaTca11B.1.177.830.001481
ORF1ab/nsp16188A188delGCA---11B.1.1790.003759
ORF1ab/nsp16188A188AgcAgcG11B.1.1950.005025
ORF1ab/nsp16188A188delGCA---11B.1.2180.005155
ORF1ab/nsp16188A188AgcAgcG11B.1.2210.000071
ORF1ab/nsp16188A188PGcaCca11B.1.2340.000132
ORF1ab/nsp16188A188SGcaTca11B.1.2340.000132
ORF1ab/nsp16188A188VgCagTa11B.1.2340.000132
ORF1ab/nsp16188A188AgcAgcT11B.1.2400.000216
ORF1ab/nsp16188A188AgcAgcT11B.1.2430.00007
ORF1ab/nsp16188A188MGCAATG11B.1.2580.000067
ORF1ab/nsp16188A188VgCagTa11B.1.258.140.00098
ORF1ab/nsp16188A188VgCagTa11B.1.258.170.000104
ORF1ab/nsp16188A188AgcAgcT11B.1.258.170.000104
ORF1ab/nsp16188A188AgcAgcT11B.1.258.210.007752
ORF1ab/nsp16188A188AgcAgcG11B.1.258.220.002667
ORF1ab/nsp16188A188TGcaAca11B.1.2600.003344
ORF1ab/nsp16188A188TGcaAca11B.1.3200.001245
ORF1ab/nsp16188A188AgcAgcT11B.1.3240.001605
ORF1ab/nsp16188A188VgCagTa11B.1.3350.010309
ORF1ab/nsp16188A188VgCagTa11B.1.3490.000715
ORF1ab/nsp16188A188AgcAgcT11B.1.3510.00003
ORF1ab/nsp16188A188SGcaTca11B.1.351.20.000303
ORF1ab/nsp16188A188TGcaAca11B.1.351.20.000303
ORF1ab/nsp16188A188SGcaTca11B.1.351.50.0006
ORF1ab/nsp16188A188AgcAgcG11B.1.360.000146
ORF1ab/nsp16188A188GgCagGa11B.1.360.000146
ORF1ab/nsp16188A188SGcaTca11B.1.36.10.00114
ORF1ab/nsp16188A188SGcaTca11B.1.36.170.000494
ORF1ab/nsp16188A188SGcaTca11B.1.36.70.004
ORF1ab/nsp16188A188AgcAgcC11B.1.36.80.001
ORF1ab/nsp16188A188VgCagTa11B.1.3670.000792
ORF1ab/nsp16188A188VgCagTa11B.1.3690.000285
ORF1ab/nsp16188A188AgcAgcG11B.1.3750.00082
ORF1ab/nsp16188A188SGcaTca11B.1.3750.00082
ORF1ab/nsp16188A188SGcaTca11B.1.3970.004854
ORF1ab/nsp16188A188VgCagTa11B.1.3990.001934
ORF1ab/nsp16188A188SGcaTca11B.1.4000.000429
ORF1ab/nsp16188A188delGCA---11B.1.4090.000781
ORF1ab/nsp16188A188SGcaTca11B.1.4160.001269
ORF1ab/nsp16188A188delGCA---11B.1.416.10.001563
ORF1ab/nsp16188A188TGcaAca11B.1.416.10.001563
ORF1ab/nsp16188A188delGCA---11B.1.4270.00005
ORF1ab/nsp16188A188SGcaTca11B.1.4270.00005
ORF1ab/nsp16188A188AgcAgcG11B.1.4560.003268
ORF1ab/nsp16188A188AgcAgcG11B.1.4590.004082
ORF1ab/nsp16188A188AgcAgcT11B.1.466.20.000391
ORF1ab/nsp16188A188KGCaAAa11B.1.4970.000315
ORF1ab/nsp16188A188TGcaAca11B.1.4970.000315
ORF1ab/nsp16188A188SGcaTca11B.1.5090.000866
ORF1ab/nsp16188A188VgCagTa11B.1.5240.001406
ORF1ab/nsp16188A188AgcAgcT11B.1.5260.000024
ORF1ab/nsp16188A188TGcaAca11B.1.5260.000024
ORF1ab/nsp16188A188VgCagTa11B.1.5260.000024
ORF1ab/nsp16188A188SGcaTca11B.1.5380.008065
ORF1ab/nsp16188A188VgCagTa11B.1.5410.004425
ORF1ab/nsp16188A188delGCA---11B.1.5510.00129
ORF1ab/nsp16188A188SGcaTca11B.1.5640.000426
ORF1ab/nsp16188A188VgCagTa11B.1.5670.003333
ORF1ab/nsp16188A188delGCA---11B.1.5750.000303
ORF1ab/nsp16188A188VgCagTa11B.1.5950.000261
ORF1ab/nsp16188A188delGCA---11B.1.5950.000261
ORF1ab/nsp16188A188AgcAgcG11B.1.595.40.007299
ORF1ab/nsp16188A188VgCagTa11B.1.5960.000087
ORF1ab/nsp16188A188AgcAgcT11B.1.6090.000479
ORF1ab/nsp16188A188delGCA---11B.1.617.10.000129
ORF1ab/nsp16188A188VgCagTa11B.1.617.10.000129
ORF1ab/nsp16188A188RGCACGG11B.1.617.20.000004
ORF1ab/nsp16188A188delGCA---11B.1.6200.000946
ORF1ab/nsp16188A188TGcaAca11B.1.6210.000089
ORF1ab/nsp16188A188AgcAgcC11B.1.6370.000073
ORF1ab/nsp16188A188SGcaTca11B.1.810.021277
ORF1ab/nsp16188A188SGcaTca11B.1.9.30.038462
ORF1ab/nsp16188A188TGcaAca11B.1.910.002075
ORF1ab/nsp16188A188DgCAgAT11B.550.00295
ORF1ab/nsp16188A188SGcaTca11B.6.60.000889
ORF1ab/nsp16188A188SGcaTca11C.370.000116
ORF1ab/nsp16188A188SGcaTca11L.30.003546
ORF1ab/nsp16188A188del1GCA-NN11P.10.000016
ORF1ab/nsp16188A188SGcaTca11P.1.120.000484
ORF1ab/nsp16188A188AgcAgcG11P.1.150.000232
ORF1ab/nsp16188A188AgcAgcG11P.1.20.001156
ORF1ab/nsp16188A188SGcaTca11P.30.001595
ORF1ab/nsp16188A188SGcaTca11P.70.004367
ORF1ab/nsp16188A188SGcaTca11Q.10.000126
ORF1ab/nsp16188A188SGcaTca11Q.40.000455
ORF1ab/nsp16188A188VgCagTa11R.10.00009
ORF1ab/nsp16188A188SGcaTca11U.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.