CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 188

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16188A188AA6986AsyngcAgcT690160920.88277121220-21222
ORF1ab/nsp16188A188AA6986AsyngcAgcG69017950.11520121220-21222
ORF1ab/nsp16188A188AA6986AsyngcAgcC6901140.0020286921220-21222
ORF1ab/nsp16188A188SA6986SnonsynGcaTca563456330.99982221220-21222
ORF1ab/nsp16188A188SA6986SnonsynGcATcC563410.00017749421220-21222
ORF1ab/nsp16188A188VA6986VnonsyngCagTa4314290.9953621220-21222
ORF1ab/nsp16188A188VA6986VnonsyngCAgTG43120.0046403721220-21222
ORF1ab/nsp16188A188TA6986TnonsynGcaAca3553540.99718321220-21222
ORF1ab/nsp16188A188TA6986TnonsynGcAAcT35510.002816921220-21222
ORF1ab/nsp16188A188delA6986deldelGCA---221221121220-21222
ORF1ab/nsp16188A188PA6986PnonsynGcaCca1180.72727321220-21222
ORF1ab/nsp16188A188PA6986PnonsynGcACcT1130.27272721220-21222
ORF1ab/nsp16188A188GA6986GnonsyngCagGa55121220-21222
ORF1ab/nsp16188A188del1A6986del1delGCA-NN430.7521220-21222
ORF1ab/nsp16188A188del1A6986del1delgcAgc-410.2521220-21222
ORF1ab/nsp16188A188DA6986DnonsyngCAgAT33121220-21222
ORF1ab/nsp16188A188EA6986EnonsyngCagAa33121220-21222
ORF1ab/nsp16188A188LA6986LnonsynGCACTG320.66666721220-21222
ORF1ab/nsp16188A188RA6986RnonsynGCACGG310.33333321220-21222
ORF1ab/nsp16188A188RA6986RnonsynGCaCGa310.33333321220-21222
ORF1ab/nsp16188A188LA6986LnonsynGCaTTa310.33333321220-21222
ORF1ab/nsp16188A188RA6986RnonsynGCaAGa310.33333321220-21222
ORF1ab/nsp16188A188KA6986KnonsynGCaAAa11121220-21222
ORF1ab/nsp16188A188MA6986MnonsynGCAATG11121220-21222
ORF1ab/nsp16188A188FA6986FnonsynGCATTC11121220-21222

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16188A188AgcAgcT60926901All0.001165
ORF1ab/nsp16188A188AgcAgcG7956901All0.000152
ORF1ab/nsp16188A188AgcAgcC146901All0.000003
ORF1ab/nsp16188A188SGcaTca56335634All0.001077
ORF1ab/nsp16188A188SGcATcC15634All0
ORF1ab/nsp16188A188AgcAgcT49964996B.1.177.810.945854
ORF1ab/nsp16188A188SGcaTca23282328AY.40.003623
ORF1ab/nsp16188A188SGcaTca609609B.1.1.70.000545
ORF1ab/nsp16188A188AgcAgcT488489B.1.1770.006426
ORF1ab/nsp16188A188AgcAgcG1489B.1.1770.000013
ORF1ab/nsp16188A188VgCagTa429431All0.000082
ORF1ab/nsp16188A188VgCAgTG2431All0
ORF1ab/nsp16188A188TGcaAca354355All0.000068
ORF1ab/nsp16188A188TGcAAcT1355All0
ORF1ab/nsp16188A188AgcAgcT339339Z.10.979769
ORF1ab/nsp16188A188SGcaTca327327AW.10.996951
ORF1ab/nsp16188A188SGcaTca300300AY.440.001826
ORF1ab/nsp16188A188SGcaTca266266B.1.617.20.001002
ORF1ab/nsp16188A188delGCA---221221All0.000042
ORF1ab/nsp16188A188AgcAgcT199199B.1.177.500.934272
ORF1ab/nsp16188A188SGcaTca193193AY.430.000855
ORF1ab/nsp16188A188AgcAgcG162162AY.40.000252
ORF1ab/nsp16188A188AgcAgcG141143B.1.617.20.000531
ORF1ab/nsp16188A188AgcAgcC2143B.1.617.20.000008
ORF1ab/nsp16188A188SGcaTca127127B.1.1770.001672
ORF1ab/nsp16188A188AgcAgcG106106B.1.2340.013986
ORF1ab/nsp16188A188AgcAgcG9698AY.440.000584
ORF1ab/nsp16188A188AgcAgcT298AY.440.000012
ORF1ab/nsp16188A188AgcAgcG9394AY.430.000412
ORF1ab/nsp16188A188AgcAgcC194AY.430.000004
ORF1ab/nsp16188A188SGcaTca9393B.1.20.000819
ORF1ab/nsp16188A188SGcaTca8686AY.980.006794
ORF1ab/nsp16188A188TGcaAca8383AY.40.000129
ORF1ab/nsp16188A188SGcaTca8181AY.1030.000503
ORF1ab/nsp16188A188SGcaTca7777AY.50.00159
ORF1ab/nsp16188A188SGcaTca7171B.1.177.860.013025
ORF1ab/nsp16188A188SGcaTca6868AY.1020.001803
ORF1ab/nsp16188A188SGcaTca6363B.1.1600.001965
ORF1ab/nsp16188A188SGcaTca6363B.1.4040.082031
ORF1ab/nsp16188A188VgCagTa6161AY.440.000371
ORF1ab/nsp16188A188SGcaTca5555B.1.2210.003907
ORF1ab/nsp16188A188SGcaTca5353C.350.041022
ORF1ab/nsp16188A188SGcaTca4848B.1.1.3720.033058
ORF1ab/nsp16188A188SGcaTca4444B.10.000403
ORF1ab/nsp16188A188SGcaTca4343B.1.3110.011807
ORF1ab/nsp16188A188VgCagTa4343B.1.617.20.000162
ORF1ab/nsp16188A188VgCagTa4040B.1.1.70.000036
ORF1ab/nsp16188A188VgCagTa3838AY.40.000059
ORF1ab/nsp16188A188delGCA---3838B.1.20.000335
ORF1ab/nsp16188A188VgCagTa3636B.10.00033
ORF1ab/nsp16188A188AgcAgcG2835B.1.1.70.000025
ORF1ab/nsp16188A188AgcAgcC435B.1.1.70.000004
ORF1ab/nsp16188A188AgcAgcT335B.1.1.70.000003
ORF1ab/nsp16188A188TGcaAca3434B.1.1.70.00003
ORF1ab/nsp16188A188TGcaAca3434B.1.20.000299
ORF1ab/nsp16188A188delGCA---2929B.1.1.70.000026
ORF1ab/nsp16188A188VgCagTa2828B.1.20.000247
ORF1ab/nsp16188A188VgCagTa2727B.1.4260.027245
ORF1ab/nsp16188A188SGcaTca2626AY.340.002521
ORF1ab/nsp16188A188SGcaTca2424AY.46.10.024641
ORF1ab/nsp16188A188SGcaTca2323AY.200.000894
ORF1ab/nsp16188A188SGcaTca2222AY.90.001487
ORF1ab/nsp16188A188TGcaAca2121B.1.6090.010067
ORF1ab/nsp16188A188SGcaTca1919AY.250.000114
ORF1ab/nsp16188A188SGcaTca1919AY.390.00047
ORF1ab/nsp16188A188AgcAgcT1119B.10.000101
ORF1ab/nsp16188A188AgcAgcG819B.10.000073
ORF1ab/nsp16188A188SGcaTca1919B.1.177.610.826087
ORF1ab/nsp16188A188SGcaTca1818AY.220.037657
ORF1ab/nsp16188A188SGcaTca1818AY.4.20.00039
ORF1ab/nsp16188A188TGcaAca1818P.1.140.00086
ORF1ab/nsp16188A188TGcaAca1717B.1.617.20.000064
ORF1ab/nsp16188A188SGcaTca1616AY.290.000252
ORF1ab/nsp16188A188AgcAgcG1616AY.34.10.008159
ORF1ab/nsp16188A188SGcaTca1616B.1.10.00029
ORF1ab/nsp16188A188TGcaAca1515B.1.1.5180.094937
ORF1ab/nsp16188A188SGcaTca1515B.1.177.530.035885
ORF1ab/nsp16188A188SGcaTca1515B.1.2580.000998
ORF1ab/nsp16188A188TGcaAca1314AY.30.000129
ORF1ab/nsp16188A188TGcAAcT114AY.30.00001
ORF1ab/nsp16188A188delGCA---1414AY.430.000062
ORF1ab/nsp16188A188AgcAgcG1414B.1.5610.005558
ORF1ab/nsp16188A188AgcAgcG1313AY.390.000321
ORF1ab/nsp16188A188AgcAgcT613B.1.10.000109
ORF1ab/nsp16188A188AgcAgcG513B.1.10.000091
ORF1ab/nsp16188A188AgcAgcC213B.1.10.000036
ORF1ab/nsp16188A188SGcaTca1313P.10.000205
ORF1ab/nsp16188A188SGcaTca1212AY.39.10.000475
ORF1ab/nsp16188A188SGcaTca1212B.1.3510.000357
ORF1ab/nsp16188A188SGcaTca1212B.1.36.290.006208
ORF1ab/nsp16188A188PGcaCca811All0.000002
ORF1ab/nsp16188A188PGcACcT311All0.000001
ORF1ab/nsp16188A188delGCA---1111B.10.000101
ORF1ab/nsp16188A188SGcaTca1111B.1.1.5190.000437
ORF1ab/nsp16188A188AgcAgcT911B.1.20.000079
ORF1ab/nsp16188A188AgcAgcG211B.1.20.000018
ORF1ab/nsp16188A188AgcAgcG710AY.30.00007
ORF1ab/nsp16188A188AgcAgcT310AY.30.00003
ORF1ab/nsp16188A188SGcaTca1010AY.4.50.001075
ORF1ab/nsp16188A188TGcaAca1010AY.430.000044
ORF1ab/nsp16188A188delGCA---1010AY.440.000061
ORF1ab/nsp16188A188AgcAgcG1010AY.750.00056
ORF1ab/nsp16188A188SGcaTca1010B.1.1.4640.014728
ORF1ab/nsp16188A188VgCagTa1010B.1.1770.000132
ORF1ab/nsp16188A188delGCA---1010B.1.617.20.000038
ORF1ab/nsp16188A188AgcAgcG99AY.1030.000056
ORF1ab/nsp16188A188SGcaTca99AY.30.00009
ORF1ab/nsp16188A188SGcaTca99AY.760.043478
ORF1ab/nsp16188A188SGcaTca89AY.9.20.000294
ORF1ab/nsp16188A188SGcATcC19AY.9.20.000037
ORF1ab/nsp16188A188VgCagTa99B.1.10.000163
ORF1ab/nsp16188A188SGcaTca99B.1.3460.011796
ORF1ab/nsp16188A188TGcaAca88AY.1020.000212
ORF1ab/nsp16188A188VgCagTa88AY.1180.000501
ORF1ab/nsp16188A188TGcaAca88B.10.000073
ORF1ab/nsp16188A188SGcaTca88B.1.1.3060.003507
ORF1ab/nsp16188A188SGcaTca88B.1.1.3170.003294
ORF1ab/nsp16188A188SGcaTca88B.1.177.40.001688
ORF1ab/nsp16188A188SGcaTca88B.1.2430.000557
ORF1ab/nsp16188A188TGcaAca88B.1.3510.000238
ORF1ab/nsp16188A188SGcaTca88B.1.4800.0199
ORF1ab/nsp16188A188AgcAgcG88B.1.5390.140351
ORF1ab/nsp16188A188delGCA---88P.10.000126
ORF1ab/nsp16188A188delGCA---77AY.250.000042
ORF1ab/nsp16188A188SGcaTca77AY.330.000467
ORF1ab/nsp16188A188VgCagTa67AY.430.000027
ORF1ab/nsp16188A188VgCAgTG17AY.430.000004
ORF1ab/nsp16188A188VgCagTa77AY.460.000729
ORF1ab/nsp16188A188SGcaTca77B.1.360.001021
ORF1ab/nsp16188A188delGCA---77B.1.5960.00061
ORF1ab/nsp16188A188SGcaTca77C.270.12963
ORF1ab/nsp16188A188SGcaTca77P.20.001306
ORF1ab/nsp16188A188AgcAgcG77Q.70.007778
ORF1ab/nsp16188A188SGcaTca66AY.1000.000276
ORF1ab/nsp16188A188TGcaAca66AY.250.000036
ORF1ab/nsp16188A188AgcAgcG66AY.250.000036
ORF1ab/nsp16188A188SGcaTca66AY.260.00017
ORF1ab/nsp16188A188AgcAgcG66B.1.5250.000679
ORF1ab/nsp16188A188SGcaTca66D.20.00045
ORF1ab/nsp16188A188SGcaTca66R.10.00054
ORF1ab/nsp16188A188GgCagGa55All0.000001
ORF1ab/nsp16188A188VgCagTa45AY.250.000024
ORF1ab/nsp16188A188VgCAgTG15AY.250.000006
ORF1ab/nsp16188A188SGcaTca55AY.540.000477
ORF1ab/nsp16188A188SGcaTca55AY.60.000206
ORF1ab/nsp16188A188TGcaAca55B.1.10.000091
ORF1ab/nsp16188A188VgCagTa55B.1.1.4340.001743
ORF1ab/nsp16188A188VgCagTa55B.1.2210.000355
ORF1ab/nsp16188A188TGcaAca55B.1.2430.000348
ORF1ab/nsp16188A188delGCA---55B.1.3510.000149
ORF1ab/nsp16188A188delGCA---55B.1.5260.000118
ORF1ab/nsp16188A188SGcaTca55B.1.6200.00473
ORF1ab/nsp16188A188TGcaAca55P.10.000079
ORF1ab/nsp16188A188del1GCA-NN34All0.000001
ORF1ab/nsp16188A188del1gcAgc-14All0
ORF1ab/nsp16188A188VgCagTa44AY.1030.000025
ORF1ab/nsp16188A188SGcaTca44AY.1060.00134
ORF1ab/nsp16188A188SGcaTca44AY.1180.000251
ORF1ab/nsp16188A188VgCagTa44AY.1210.000541
ORF1ab/nsp16188A188SGcaTca44AY.230.000279
ORF1ab/nsp16188A188SGcaTca44AY.360.000593
ORF1ab/nsp16188A188TGcaAca44AY.450.000487
ORF1ab/nsp16188A188SGcaTca44AY.450.000487
ORF1ab/nsp16188A188SGcaTca44AY.460.000416
ORF1ab/nsp16188A188SGcaTca44AY.46.60.000289
ORF1ab/nsp16188A188TGcaAca44AY.470.000124
ORF1ab/nsp16188A188SGcaTca44AY.700.000834
ORF1ab/nsp16188A188SGcaTca44AY.850.001709
ORF1ab/nsp16188A188SGcaTca44AY.890.019608
ORF1ab/nsp16188A188VgCagTa44AY.98.10.000194
ORF1ab/nsp16188A188delGCA---44B.1.10.000073
ORF1ab/nsp16188A188PGcACcT24B.1.1.70.000002
ORF1ab/nsp16188A188PGcaCca24B.1.1.70.000002
ORF1ab/nsp16188A188AgcAgcT44B.1.177.720.013559
ORF1ab/nsp16188A188VgCagTa44B.1.2430.000278
ORF1ab/nsp16188A188delGCA---44B.1.5250.000453
ORF1ab/nsp16188A188VgCagTa44P.10.000063
ORF1ab/nsp16188A188delGCA---44P.1.150.000929
ORF1ab/nsp16188A188DgCAgAT33All0.000001
ORF1ab/nsp16188A188EgCagAa33All0.000001
ORF1ab/nsp16188A188LGCACTG23All0
ORF1ab/nsp16188A188RGCaAGa13All0
ORF1ab/nsp16188A188RGCACGG13All0
ORF1ab/nsp16188A188RGCaCGa13All0
ORF1ab/nsp16188A188LGCaTTa13All0
ORF1ab/nsp16188A188AgcAgcT33AY.1170.000254
ORF1ab/nsp16188A188SGcaTca33AY.1210.000406
ORF1ab/nsp16188A188SGcaTca33AY.20.001068
ORF1ab/nsp16188A188AgcAgcG33AY.230.000209
ORF1ab/nsp16188A188VgCagTa33AY.30.00003
ORF1ab/nsp16188A188SGcaTca33AY.300.001187
ORF1ab/nsp16188A188AgcAgcT33AY.330.0002
ORF1ab/nsp16188A188delGCA---33AY.40.000005
ORF1ab/nsp16188A188AgcAgcG33AY.4.20.000065
ORF1ab/nsp16188A188SGcaTca33AY.420.000121
ORF1ab/nsp16188A188SGcaTca33AY.530.000863
ORF1ab/nsp16188A188SGcaTca33AY.630.001161
ORF1ab/nsp16188A188AgcAgcG33AY.770.003382
ORF1ab/nsp16188A188TGcaAca33AY.850.001282
ORF1ab/nsp16188A188SGcaTca33AY.920.000862
ORF1ab/nsp16188A188AgcAgcT33B0.000383
ORF1ab/nsp16188A188SGcaTca33B.1.1.2160.002671
ORF1ab/nsp16188A188SGcaTca33B.1.1.2360.02069
ORF1ab/nsp16188A188VgCagTa33B.1.1.3580.103448
ORF1ab/nsp16188A188VgCagTa33B.1.1600.000094
ORF1ab/nsp16188A188VgCagTa33B.1.177.100.002634
ORF1ab/nsp16188A188AgcAgcG33B.1.2580.0002
ORF1ab/nsp16188A188TGcaAca33B.1.2580.0002
ORF1ab/nsp16188A188SGcaTca33B.1.36.100.014354
ORF1ab/nsp16188A188AgcAgcG33B.1.4290.000071
ORF1ab/nsp16188A188delGCA---33B.1.4290.000071
ORF1ab/nsp16188A188AgcAgcG33B.1.5240.004219
ORF1ab/nsp16188A188SGcaTca33B.1.5260.000071
ORF1ab/nsp16188A188delGCA---33B.1.6210.000266
ORF1ab/nsp16188A188delGCA---33C.370.000348
ORF1ab/nsp16188A188AgcAgcT13P.10.000016
ORF1ab/nsp16188A188AgcAgcG13P.10.000016
ORF1ab/nsp16188A188AgcAgcC13P.10.000016
ORF1ab/nsp16188A188LGCACTG220.111111
ORF1ab/nsp16188A188delGCA---220.111111
ORF1ab/nsp16188A188SGcaTca22AY.10.000791
ORF1ab/nsp16188A188TGcaAca22AY.1030.000012
ORF1ab/nsp16188A188delGCA---22AY.1180.000125
ORF1ab/nsp16188A188TGcaAca22AY.1190.000071
ORF1ab/nsp16188A188AgcAgcT22AY.1200.000074
ORF1ab/nsp16188A188PGcACcT12AY.30.00001
ORF1ab/nsp16188A188PGcaCca12AY.30.00001
ORF1ab/nsp16188A188delGCA---22AY.34.10.00102
ORF1ab/nsp16188A188VgCagTa22AY.390.000049
ORF1ab/nsp16188A188AgcAgcG22AY.4.50.000215
ORF1ab/nsp16188A188SGcaTca22AY.46.20.001271
ORF1ab/nsp16188A188SGcaTca22AY.470.000062
ORF1ab/nsp16188A188SGcaTca22AY.610.00021
ORF1ab/nsp16188A188delGCA---22AY.680.000547
ORF1ab/nsp16188A188VgCagTa22AY.750.000112
ORF1ab/nsp16188A188SGcaTca22AY.780.003082
ORF1ab/nsp16188A188SGcaTca22AY.98.10.000097
ORF1ab/nsp16188A188delGCA---22AY.990.002099
ORF1ab/nsp16188A188SGcaTca22AZ.20.001642
ORF1ab/nsp16188A188PGcaCca22B.10.000018
ORF1ab/nsp16188A188SGcaTca22B.1.1.1480.017544
ORF1ab/nsp16188A188delGCA---22B.1.1.1740.006757
ORF1ab/nsp16188A188TGcaAca22B.1.1.1760.000879
ORF1ab/nsp16188A188SGcaTca22B.1.1.1980.002937
ORF1ab/nsp16188A188SGcaTca22B.1.1.2220.000408
ORF1ab/nsp16188A188SGcaTca22B.1.1.4320.002532
ORF1ab/nsp16188A188VgCagTa22B.1.1.630.000772
ORF1ab/nsp16188A188SGcaTca22B.1.110.30.001437
ORF1ab/nsp16188A188AgcAgcG22B.1.1420.005797
ORF1ab/nsp16188A188AgcAgcT12B.1.1600.000031
ORF1ab/nsp16188A188AgcAgcC12B.1.1600.000031
ORF1ab/nsp16188A188SGcaTca22B.1.1660.016949
ORF1ab/nsp16188A188delGCA---22B.1.1770.000026
ORF1ab/nsp16188A188AgcAgcT22B.1.177.310.022989
ORF1ab/nsp16188A188VgCagTa22B.1.177.560.001335
ORF1ab/nsp16188A188VgCagTa22B.1.177.570.000562
ORF1ab/nsp16188A188SGcaTca22B.1.177.730.001133
ORF1ab/nsp16188A188AgcAgcT12B.1.177.860.000183
ORF1ab/nsp16188A188AgcAgcG12B.1.177.860.000183
ORF1ab/nsp16188A188TGcaAca22B.1.2210.000142
ORF1ab/nsp16188A188TGcaAca22B.1.2340.000264
ORF1ab/nsp16188A188delGCA---22B.1.2430.000139
ORF1ab/nsp16188A188delGCA---22B.1.2580.000133
ORF1ab/nsp16188A188TGcaAca22B.1.4040.002604
ORF1ab/nsp16188A188TGcaAca22B.1.4290.000047
ORF1ab/nsp16188A188SGcaTca22B.1.4290.000047
ORF1ab/nsp16188A188VgCagTa22B.1.5090.001732
ORF1ab/nsp16188A188VgCagTa22B.1.5510.002581
ORF1ab/nsp16188A188SGcaTca22B.1.617.10.000258
ORF1ab/nsp16188A188TGcaAca22B.60.00182
ORF1ab/nsp16188A188AgcAgcG22C.370.000232
ORF1ab/nsp16188A188VgCagTa22D.20.00015
ORF1ab/nsp16188A188SGcaTca22P.1.140.000096
ORF1ab/nsp16188A188SGcaTca22P.1.17.10.00175
ORF1ab/nsp16188A188delGCA---22P.1.70.000639
ORF1ab/nsp16188A188AgcAgcG22P.20.000373
ORF1ab/nsp16188A188VgCagTa22U.30.007722
ORF1ab/nsp16188A188SGcaTca11A.2.50.000499
ORF1ab/nsp16188A188TGcaAca11A.23.10.000704
ORF1ab/nsp16188A188SGcaTca11A.23.10.000704
ORF1ab/nsp16188A188SGcaTca11A.250.018182
ORF1ab/nsp16188A188SGcaTca11AL.10.012987
ORF1ab/nsp16188A188MGCAATG11All0
ORF1ab/nsp16188A188KGCaAAa11All0
ORF1ab/nsp16188A188FGCATTC11All0
ORF1ab/nsp16188A188TGcaAca11AU.20.002421
ORF1ab/nsp16188A188delGCA---11AV.10.005051
ORF1ab/nsp16188A188VgCagTa11AY.100.00053
ORF1ab/nsp16188A188delGCA---11AY.1000.000046
ORF1ab/nsp16188A188delGCA---11AY.1020.000027
ORF1ab/nsp16188A188SGcaTca11AY.1050.000643
ORF1ab/nsp16188A188delGCA---11AY.1070.000466
ORF1ab/nsp16188A188VgCagTa11AY.1100.000113
ORF1ab/nsp16188A188delGCA---11AY.1100.000113
ORF1ab/nsp16188A188SGcaTca11AY.1100.000113
ORF1ab/nsp16188A188AgcAgcG11AY.1130.000142
ORF1ab/nsp16188A188SGcaTca11AY.1140.000231
ORF1ab/nsp16188A188TGcaAca11AY.1140.000231
ORF1ab/nsp16188A188VgCagTa11AY.1140.000231
ORF1ab/nsp16188A188SGcaTca11AY.116.10.000311
ORF1ab/nsp16188A188TGcaAca11AY.1170.000085
ORF1ab/nsp16188A188delGCA---11AY.1190.000035
ORF1ab/nsp16188A188AgcAgcG11AY.1190.000035
ORF1ab/nsp16188A188SGcaTca11AY.1190.000035
ORF1ab/nsp16188A188VgCagTa11AY.120.000316
ORF1ab/nsp16188A188SGcaTca11AY.1200.000037
ORF1ab/nsp16188A188TGcaAca11AY.1200.000037
ORF1ab/nsp16188A188AgcAgcG11AY.1210.000135
ORF1ab/nsp16188A188SGcaTca11AY.140.000088
ORF1ab/nsp16188A188VgCagTa11AY.160.00038
ORF1ab/nsp16188A188delGCA---11AY.190.00114
ORF1ab/nsp16188A188VgCagTa11AY.200.000039
ORF1ab/nsp16188A188VgCagTa11AY.230.00007
ORF1ab/nsp16188A188delGCA---11AY.230.00007
ORF1ab/nsp16188A188EgCagAa11AY.23.10.000417
ORF1ab/nsp16188A188SGcaTca11AY.240.000431
ORF1ab/nsp16188A188EgCagAa11AY.250.000006
ORF1ab/nsp16188A188VgCagTa11AY.260.000028
ORF1ab/nsp16188A188AgcAgcT11AY.270.000065
ORF1ab/nsp16188A188AgcAgcG11AY.290.000016
ORF1ab/nsp16188A188TGcaAca11AY.290.000016
ORF1ab/nsp16188A188delGCA---11AY.30.00001
ORF1ab/nsp16188A188SGcaTca11AY.3.10.000085
ORF1ab/nsp16188A188AgcAgcG11AY.300.000396
ORF1ab/nsp16188A188TGcaAca11AY.320.000532
ORF1ab/nsp16188A188delGCA---11AY.330.000067
ORF1ab/nsp16188A188TGcaAca11AY.330.000067
ORF1ab/nsp16188A188del1GCA-NN11AY.34.10.00051
ORF1ab/nsp16188A188VgCagTa11AY.34.10.00051
ORF1ab/nsp16188A188delGCA---11AY.390.000025
ORF1ab/nsp16188A188AgcAgcC11AY.39.10.00004
ORF1ab/nsp16188A188SGcaTca11AY.39.1.10.000725
ORF1ab/nsp16188A188SGcaTca11AY.4.30.000842
ORF1ab/nsp16188A188SGcaTca11AY.4.40.000409
ORF1ab/nsp16188A188delGCA---11AY.4.50.000107
ORF1ab/nsp16188A188VgCagTa11AY.410.000294
ORF1ab/nsp16188A188VgCagTa11AY.420.00004
ORF1ab/nsp16188A188RGCaAGa11AY.430.000004
ORF1ab/nsp16188A188EgCagAa11AY.440.000006
ORF1ab/nsp16188A188RGCaCGa11AY.440.000006
ORF1ab/nsp16188A188TGcaAca11AY.440.000006
ORF1ab/nsp16188A188TGcaAca11AY.460.000104
ORF1ab/nsp16188A188VgCagTa11AY.46.10.001027
ORF1ab/nsp16188A188SGcaTca11AY.46.50.000198
ORF1ab/nsp16188A188VgCagTa11AY.46.60.000072
ORF1ab/nsp16188A188AgcAgcG11AY.470.000031
ORF1ab/nsp16188A188VgCagTa11AY.50.000021
ORF1ab/nsp16188A188AgcAgcG11AY.50.000021
ORF1ab/nsp16188A188TGcaAca11AY.5.30.000337
ORF1ab/nsp16188A188AgcAgcG11AY.5.40.000277
ORF1ab/nsp16188A188delGCA---11AY.540.000095
ORF1ab/nsp16188A188delGCA---11AY.590.00053
ORF1ab/nsp16188A188SGcaTca11AY.590.00053
ORF1ab/nsp16188A188TGcaAca11AY.610.000105
ORF1ab/nsp16188A188TGcaAca11AY.630.000387
ORF1ab/nsp16188A188VgCagTa11AY.650.000533
ORF1ab/nsp16188A188delGCA---11AY.670.000464
ORF1ab/nsp16188A188VgCagTa11AY.690.000187
ORF1ab/nsp16188A188SGcaTca11AY.7.10.000113
ORF1ab/nsp16188A188VgCagTa11AY.700.000209
ORF1ab/nsp16188A188AgcAgcG11AY.740.000116
ORF1ab/nsp16188A188SGcaTca11AY.750.000056
ORF1ab/nsp16188A188DgCAgAT11AY.840.000437
ORF1ab/nsp16188A188GgCagGa11AY.9.10.000084
ORF1ab/nsp16188A188TGcaAca11AY.9.20.000037
ORF1ab/nsp16188A188LGCaTTa11AY.9.20.000037
ORF1ab/nsp16188A188FGCATTC11AY.9.20.000037
ORF1ab/nsp16188A188AgcAgcG11AY.9.20.000037
ORF1ab/nsp16188A188VgCagTa11AY.920.000287
ORF1ab/nsp16188A188AgcAgcG11AY.920.000287
ORF1ab/nsp16188A188TGcaAca11AY.930.000273
ORF1ab/nsp16188A188delGCA---11AY.950.000761
ORF1ab/nsp16188A188VgCagTa11AY.980.000079
ORF1ab/nsp16188A188TGcaAca11AY.98.10.000048
ORF1ab/nsp16188A188AgcAgcG11AY.99.20.000092
ORF1ab/nsp16188A188SGcaTca11AY.99.20.000092
ORF1ab/nsp16188A188VgCagTa11AZ.20.000821
ORF1ab/nsp16188A188VgCagTa11AZ.2.10.00813
ORF1ab/nsp16188A188SGcaTca11B0.000128
ORF1ab/nsp16188A188DgCAgAT11B0.000128
ORF1ab/nsp16188A188del1GCA-NN11B.10.000009
ORF1ab/nsp16188A188GgCagGa11B.10.000009
ORF1ab/nsp16188A188TGcaAca11B.1.1.1010.01
ORF1ab/nsp16188A188VgCagTa11B.1.1.1180.010204
ORF1ab/nsp16188A188TGcaAca11B.1.1.1420.017544
ORF1ab/nsp16188A188SGcaTca11B.1.1.1700.001247
ORF1ab/nsp16188A188AgcAgcG11B.1.1.1940.00495
ORF1ab/nsp16188A188VgCagTa11B.1.1.1980.001468
ORF1ab/nsp16188A188delGCA---11B.1.1.2070.001182
ORF1ab/nsp16188A188SGcaTca11B.1.1.2140.000055
ORF1ab/nsp16188A188VgCagTa11B.1.1.2140.000055
ORF1ab/nsp16188A188AgcAgcT11B.1.1.2220.000204
ORF1ab/nsp16188A188TGcaAca11B.1.1.2220.000204
ORF1ab/nsp16188A188VgCagTa11B.1.1.2360.006897
ORF1ab/nsp16188A188SGcaTca11B.1.1.250.000569
ORF1ab/nsp16188A188VgCagTa11B.1.1.280.000311
ORF1ab/nsp16188A188SGcaTca11B.1.1.2860.002899
ORF1ab/nsp16188A188VgCagTa11B.1.1.2890.002083
ORF1ab/nsp16188A188PGcaCca11B.1.1.3060.000438
ORF1ab/nsp16188A188TGcaAca11B.1.1.3060.000438
ORF1ab/nsp16188A188VgCagTa11B.1.1.3170.000412
ORF1ab/nsp16188A188AgcAgcG11B.1.1.330.000421
ORF1ab/nsp16188A188TGcaAca11B.1.1.330.000421
ORF1ab/nsp16188A188AgcAgcT11B.1.1.3720.000689
ORF1ab/nsp16188A188VgCagTa11B.1.1.3720.000689
ORF1ab/nsp16188A188TGcaAca11B.1.1.3770.001381
ORF1ab/nsp16188A188VgCagTa11B.1.1.3850.004464
ORF1ab/nsp16188A188GgCagGa11B.1.1.4090.002833
ORF1ab/nsp16188A188AgcAgcG11B.1.1.4110.014706
ORF1ab/nsp16188A188VgCagTa11B.1.1.4160.000905
ORF1ab/nsp16188A188VgCagTa11B.1.1.4480.002033
ORF1ab/nsp16188A188PGcaCca11B.1.1.4640.001473
ORF1ab/nsp16188A188delGCA---11B.1.1.5170.006803
ORF1ab/nsp16188A188TGcaAca11B.1.1.5190.00004
ORF1ab/nsp16188A188delGCA---11B.1.1.5190.00004
ORF1ab/nsp16188A188AgcAgcG11B.1.1.5230.001563
ORF1ab/nsp16188A188GgCagGa11B.1.1.70.000001
ORF1ab/nsp16188A188del1gcAgc-11B.1.1.70.000001
ORF1ab/nsp16188A188AgcAgcG11B.1.1.700.000341
ORF1ab/nsp16188A188SGcaTca11B.1.1.700.000341
ORF1ab/nsp16188A188delGCA---11B.1.110.30.000718
ORF1ab/nsp16188A188SGcaTca11B.1.1190.010526
ORF1ab/nsp16188A188VgCagTa11B.1.1430.021277
ORF1ab/nsp16188A188SGcaTca11B.1.1590.012195
ORF1ab/nsp16188A188TGcaAca11B.1.1600.000031
ORF1ab/nsp16188A188TGcaAca11B.1.1770.000013
ORF1ab/nsp16188A188VgCagTa11B.1.177.120.000152
ORF1ab/nsp16188A188VgCagTa11B.1.177.170.000821
ORF1ab/nsp16188A188AgcAgcG11B.1.177.210.000076
ORF1ab/nsp16188A188AgcAgcT11B.1.177.350.000691
ORF1ab/nsp16188A188AgcAgcG11B.1.177.40.000211
ORF1ab/nsp16188A188SGcaTca11B.1.177.430.001477
ORF1ab/nsp16188A188delGCA---11B.1.177.500.004695
ORF1ab/nsp16188A188delGCA---11B.1.177.600.000218
ORF1ab/nsp16188A188TGcaAca11B.1.177.650.000665
ORF1ab/nsp16188A188AgcAgcT11B.1.177.650.000665
ORF1ab/nsp16188A188delGCA---11B.1.177.680.015152
ORF1ab/nsp16188A188SGcaTca11B.1.177.70.000165
ORF1ab/nsp16188A188VgCagTa11B.1.177.750.001041
ORF1ab/nsp16188A188AgcAgcT11B.1.177.750.001041
ORF1ab/nsp16188A188AgcAgcT11B.1.177.760.002494
ORF1ab/nsp16188A188SGcaTca11B.1.177.830.001481
ORF1ab/nsp16188A188delGCA---11B.1.1790.003759
ORF1ab/nsp16188A188AgcAgcG11B.1.1950.005025
ORF1ab/nsp16188A188delGCA---11B.1.2180.005155
ORF1ab/nsp16188A188AgcAgcG11B.1.2210.000071
ORF1ab/nsp16188A188PGcaCca11B.1.2340.000132
ORF1ab/nsp16188A188SGcaTca11B.1.2340.000132
ORF1ab/nsp16188A188VgCagTa11B.1.2340.000132
ORF1ab/nsp16188A188AgcAgcT11B.1.2400.000216
ORF1ab/nsp16188A188AgcAgcT11B.1.2430.00007
ORF1ab/nsp16188A188MGCAATG11B.1.2580.000067
ORF1ab/nsp16188A188VgCagTa11B.1.258.140.00098
ORF1ab/nsp16188A188VgCagTa11B.1.258.170.000104
ORF1ab/nsp16188A188AgcAgcT11B.1.258.170.000104
ORF1ab/nsp16188A188AgcAgcT11B.1.258.210.007752
ORF1ab/nsp16188A188AgcAgcG11B.1.258.220.002667
ORF1ab/nsp16188A188TGcaAca11B.1.2600.003344
ORF1ab/nsp16188A188TGcaAca11B.1.3200.001245
ORF1ab/nsp16188A188AgcAgcT11B.1.3240.001605
ORF1ab/nsp16188A188VgCagTa11B.1.3350.010309
ORF1ab/nsp16188A188VgCagTa11B.1.3490.000715
ORF1ab/nsp16188A188AgcAgcT11B.1.3510.00003
ORF1ab/nsp16188A188SGcaTca11B.1.351.20.000303
ORF1ab/nsp16188A188TGcaAca11B.1.351.20.000303
ORF1ab/nsp16188A188SGcaTca11B.1.351.50.0006
ORF1ab/nsp16188A188AgcAgcG11B.1.360.000146
ORF1ab/nsp16188A188GgCagGa11B.1.360.000146
ORF1ab/nsp16188A188SGcaTca11B.1.36.10.00114
ORF1ab/nsp16188A188SGcaTca11B.1.36.170.000494
ORF1ab/nsp16188A188SGcaTca11B.1.36.70.004
ORF1ab/nsp16188A188AgcAgcC11B.1.36.80.001
ORF1ab/nsp16188A188VgCagTa11B.1.3670.000792
ORF1ab/nsp16188A188VgCagTa11B.1.3690.000285
ORF1ab/nsp16188A188AgcAgcG11B.1.3750.00082
ORF1ab/nsp16188A188SGcaTca11B.1.3750.00082
ORF1ab/nsp16188A188SGcaTca11B.1.3970.004854
ORF1ab/nsp16188A188VgCagTa11B.1.3990.001934
ORF1ab/nsp16188A188SGcaTca11B.1.4000.000429
ORF1ab/nsp16188A188delGCA---11B.1.4090.000781
ORF1ab/nsp16188A188SGcaTca11B.1.4160.001269
ORF1ab/nsp16188A188delGCA---11B.1.416.10.001563
ORF1ab/nsp16188A188TGcaAca11B.1.416.10.001563
ORF1ab/nsp16188A188delGCA---11B.1.4270.00005
ORF1ab/nsp16188A188SGcaTca11B.1.4270.00005
ORF1ab/nsp16188A188AgcAgcG11B.1.4560.003268
ORF1ab/nsp16188A188AgcAgcG11B.1.4590.004082
ORF1ab/nsp16188A188AgcAgcT11B.1.466.20.000391
ORF1ab/nsp16188A188KGCaAAa11B.1.4970.000315
ORF1ab/nsp16188A188TGcaAca11B.1.4970.000315
ORF1ab/nsp16188A188SGcaTca11B.1.5090.000866
ORF1ab/nsp16188A188VgCagTa11B.1.5240.001406
ORF1ab/nsp16188A188AgcAgcT11B.1.5260.000024
ORF1ab/nsp16188A188TGcaAca11B.1.5260.000024
ORF1ab/nsp16188A188VgCagTa11B.1.5260.000024
ORF1ab/nsp16188A188SGcaTca11B.1.5380.008065
ORF1ab/nsp16188A188VgCagTa11B.1.5410.004425
ORF1ab/nsp16188A188delGCA---11B.1.5510.00129
ORF1ab/nsp16188A188SGcaTca11B.1.5640.000426
ORF1ab/nsp16188A188VgCagTa11B.1.5670.003333
ORF1ab/nsp16188A188delGCA---11B.1.5750.000303
ORF1ab/nsp16188A188VgCagTa11B.1.5950.000261
ORF1ab/nsp16188A188delGCA---11B.1.5950.000261
ORF1ab/nsp16188A188AgcAgcG11B.1.595.40.007299
ORF1ab/nsp16188A188VgCagTa11B.1.5960.000087
ORF1ab/nsp16188A188AgcAgcT11B.1.6090.000479
ORF1ab/nsp16188A188delGCA---11B.1.617.10.000129
ORF1ab/nsp16188A188VgCagTa11B.1.617.10.000129
ORF1ab/nsp16188A188RGCACGG11B.1.617.20.000004
ORF1ab/nsp16188A188delGCA---11B.1.6200.000946
ORF1ab/nsp16188A188TGcaAca11B.1.6210.000089
ORF1ab/nsp16188A188AgcAgcC11B.1.6370.000073
ORF1ab/nsp16188A188SGcaTca11B.1.810.021277
ORF1ab/nsp16188A188SGcaTca11B.1.9.30.038462
ORF1ab/nsp16188A188TGcaAca11B.1.910.002075
ORF1ab/nsp16188A188DgCAgAT11B.550.00295
ORF1ab/nsp16188A188SGcaTca11B.6.60.000889
ORF1ab/nsp16188A188SGcaTca11C.370.000116
ORF1ab/nsp16188A188SGcaTca11L.30.003546
ORF1ab/nsp16188A188del1GCA-NN11P.10.000016
ORF1ab/nsp16188A188SGcaTca11P.1.120.000484
ORF1ab/nsp16188A188AgcAgcG11P.1.150.000232
ORF1ab/nsp16188A188AgcAgcG11P.1.20.001156
ORF1ab/nsp16188A188SGcaTca11P.30.001595
ORF1ab/nsp16188A188SGcaTca11P.70.004367
ORF1ab/nsp16188A188SGcaTca11Q.10.000126
ORF1ab/nsp16188A188SGcaTca11Q.40.000455
ORF1ab/nsp16188A188VgCagTa11R.10.00009
ORF1ab/nsp16188A188SGcaTca11U.10.012821