CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 185

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16185G185GG6983GsynggAggG186618370.98445921211-21213
ORF1ab/nsp16185G185GG6983GsynggAggC1866220.011789921211-21213
ORF1ab/nsp16185G185GG6983GsynggAggT186670.0037513421211-21213
ORF1ab/nsp16185G185delG6983deldelGGA---212212121211-21213
ORF1ab/nsp16185G185EG6983EnonsyngGagAa5252121211-21213
ORF1ab/nsp16185G185RG6983RnonsynGgaCga35230.65714321211-21213
ORF1ab/nsp16185G185RG6983RnonsynGgaAga35120.34285721211-21213
ORF1ab/nsp16185G185AG6983AnonsyngGagCa3232121211-21213
ORF1ab/nsp16185G185XG6983XnonsynGgaTga17160.94117621211-21213
ORF1ab/nsp16185G185XG6983XnonsynGGATAG1710.058823521211-21213
ORF1ab/nsp16185G185del1G6983del1delggAgg-840.521211-21213
ORF1ab/nsp16185G185del1G6983del1delGga-ga820.2521211-21213
ORF1ab/nsp16185G185del1G6983del1delGGA-NN810.12521211-21213
ORF1ab/nsp16185G185del1G6983del1delGGAAA-810.12521211-21213
ORF1ab/nsp16185G185VG6983VnonsyngGagTa66121211-21213
ORF1ab/nsp16185G185LG6983LnonsynGGaTTa320.66666721211-21213
ORF1ab/nsp16185G185LG6983LnonsynGGaCTa310.33333321211-21213
ORF1ab/nsp16185G185SG6983SnonsynGgAAgT310.33333321211-21213
ORF1ab/nsp16185G185SG6983SnonsynGGATCT310.33333321211-21213
ORF1ab/nsp16185G185SG6983SnonsynGGATCG310.33333321211-21213
ORF1ab/nsp16185G185del2G6983del2delGGA--N22121211-21213
ORF1ab/nsp16185G185NG6983NnonsynGGAAAT22121211-21213
ORF1ab/nsp16185G185PG6983PnonsynGGaCCa22121211-21213
ORF1ab/nsp16185G185DG6983DnonsyngGAgAC11121211-21213
ORF1ab/nsp16185G185YG6983YnonsynGGATAT11121211-21213
ORF1ab/nsp16185G185KG6983KnonsynGGAAAG11121211-21213

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16185G185GggAggG18371866All0.000351
ORF1ab/nsp16185G185GggAggC221866All0.000004
ORF1ab/nsp16185G185GggAggT71866All0.000001
ORF1ab/nsp16185G185GggAggG15581558B.1.619.10.999359
ORF1ab/nsp16185G185delGGA---212212All0.000041
ORF1ab/nsp16185G185GggAggG105105B.1.1.1330.889831
ORF1ab/nsp16185G185GggAggG6666B.1.1.2220.013464
ORF1ab/nsp16185G185EgGagAa5252All0.00001
ORF1ab/nsp16185G185delGGA---4040B.1.20.000352
ORF1ab/nsp16185G185RGgaCga2335All0.000004
ORF1ab/nsp16185G185RGgaAga1235All0.000002
ORF1ab/nsp16185G185AgGagCa3232All0.000006
ORF1ab/nsp16185G185delGGA---3131B.1.1.70.000028
ORF1ab/nsp16185G185AgGagCa2727AY.3.10.002302
ORF1ab/nsp16185G185GggAggG2323B.1.1.70.000021
ORF1ab/nsp16185G185GggAggC1921AY.40.00003
ORF1ab/nsp16185G185GggAggG221AY.40.000003
ORF1ab/nsp16185G185XGgaTga1617All0.000003
ORF1ab/nsp16185G185XGGATAG117All0
ORF1ab/nsp16185G185GggAggG1717B.10.000156
ORF1ab/nsp16185G185delGGA---1515AY.430.000066
ORF1ab/nsp16185G185delGGA---1111B.10.000101
ORF1ab/nsp16185G185RGgaCga1111B.1.1.70.00001
ORF1ab/nsp16185G185delGGA---99B.1.617.20.000034
ORF1ab/nsp16185G185del1ggAgg-48All0.000001
ORF1ab/nsp16185G185del1Gga-ga28All0
ORF1ab/nsp16185G185del1GGA-NN18All0
ORF1ab/nsp16185G185del1GGAAA-18All0
ORF1ab/nsp16185G185EgGagAa88B.1.20.00007
ORF1ab/nsp16185G185delGGA---88P.10.000126
ORF1ab/nsp16185G185RGgaCga77B.1.5250.000792
ORF1ab/nsp16185G185delGGA---77B.1.5960.00061
ORF1ab/nsp16185G185VgGagTa66All0.000001
ORF1ab/nsp16185G185EgGagAa66B.10.000055
ORF1ab/nsp16185G185delGGA---55B.1.3510.000149
ORF1ab/nsp16185G185EgGagAa55B.1.4460.1
ORF1ab/nsp16185G185delGGA---55B.1.5260.000118
ORF1ab/nsp16185G185delGGA---55P.1.150.001162
ORF1ab/nsp16185G185delGGA---44AY.250.000024
ORF1ab/nsp16185G185GggAggG44AY.290.000063
ORF1ab/nsp16185G185delGGA---44AY.40.000006
ORF1ab/nsp16185G185RGgaAga34AY.430.000013
ORF1ab/nsp16185G185RGgaCga14AY.430.000004
ORF1ab/nsp16185G185XGgaTga44B.10.000037
ORF1ab/nsp16185G185GggAggT34B.1.10.000054
ORF1ab/nsp16185G185GggAggG14B.1.10.000018
ORF1ab/nsp16185G185EgGagAa44B.1.1.2910.00297
ORF1ab/nsp16185G185EgGagAa44B.1.1690.059701
ORF1ab/nsp16185G185delGGA---44B.1.5250.000453
ORF1ab/nsp16185G185GggAggG44B.1.5610.001588
ORF1ab/nsp16185G185LGGaTTa23All0
ORF1ab/nsp16185G185SGgAAgT13All0
ORF1ab/nsp16185G185LGGaCTa13All0
ORF1ab/nsp16185G185SGGATCT13All0
ORF1ab/nsp16185G185SGGATCG13All0
ORF1ab/nsp16185G185GggAggG33AY.250.000018
ORF1ab/nsp16185G185GggAggG33AY.360.000445
ORF1ab/nsp16185G185GggAggG33AY.430.000013
ORF1ab/nsp16185G185delGGA---33B.1.10.000054
ORF1ab/nsp16185G185GggAggG23B.1.1600.000062
ORF1ab/nsp16185G185GggAggT13B.1.1600.000031
ORF1ab/nsp16185G185VgGagTa33B.1.20.000026
ORF1ab/nsp16185G185GggAggG33B.1.20.000026
ORF1ab/nsp16185G185delGGA---33B.1.2580.0002
ORF1ab/nsp16185G185GggAggG33B.1.3320.01049
ORF1ab/nsp16185G185delGGA---33B.1.4290.000071
ORF1ab/nsp16185G185GggAggG33B.1.5820.001472
ORF1ab/nsp16185G185LGGaTTa23B.1.617.10.000258
ORF1ab/nsp16185G185LGGaCTa13B.1.617.10.000129
ORF1ab/nsp16185G185EgGagAa33B.1.617.20.000011
ORF1ab/nsp16185G185delGGA---33B.1.6210.000266
ORF1ab/nsp16185G185delGGA---33C.370.000348
ORF1ab/nsp16185G185XGgaTga33D.20.000225
ORF1ab/nsp16185G185GggAggG33P.10.000047
ORF1ab/nsp16185G185delGGA---220.111111
ORF1ab/nsp16185G185NGGAAAT220.111111
ORF1ab/nsp16185G185EgGagAa22A.10.000564
ORF1ab/nsp16185G185del2GGA--N22All0
ORF1ab/nsp16185G185PGGaCCa22All0
ORF1ab/nsp16185G185NGGAAAT22All0
ORF1ab/nsp16185G185GggAggG22AY.1090.001479
ORF1ab/nsp16185G185XGGATAG12AY.1130.000142
ORF1ab/nsp16185G185XGgaTga12AY.1130.000142
ORF1ab/nsp16185G185SGGATCG12AY.1130.000142
ORF1ab/nsp16185G185SGGATCT12AY.1130.000142
ORF1ab/nsp16185G185delGGA---22AY.1180.000125
ORF1ab/nsp16185G185del1ggAgg-22AY.250.000012
ORF1ab/nsp16185G185delGGA---22AY.30.00002
ORF1ab/nsp16185G185GggAggC12AY.39.10.00004
ORF1ab/nsp16185G185GggAggG12AY.39.10.00004
ORF1ab/nsp16185G185RGgaAga22AY.9.20.000073
ORF1ab/nsp16185G185delGGA---22AY.990.002099
ORF1ab/nsp16185G185delGGA---22B.1.1.1740.006757
ORF1ab/nsp16185G185EgGagAa22B.1.1.70.000002
ORF1ab/nsp16185G185delGGA---22B.1.1770.000026
ORF1ab/nsp16185G185AgGagCa22B.1.20.000018
ORF1ab/nsp16185G185delGGA---22B.1.2430.000139
ORF1ab/nsp16185G185GggAggG22B.1.2580.000133
ORF1ab/nsp16185G185AgGagCa22B.1.3510.000059
ORF1ab/nsp16185G185EgGagAa22B.1.4160.002538
ORF1ab/nsp16185G185PGGaCCa22B.1.5250.000226
ORF1ab/nsp16185G185GggAggG22B.1.5960.000174
ORF1ab/nsp16185G185GggAggG22B.1.617.20.000008
ORF1ab/nsp16185G185GggAggG22B.1.6190.001742
ORF1ab/nsp16185G185delGGA---22P.1.70.000639
ORF1ab/nsp16185G185YGGATAT11All0
ORF1ab/nsp16185G185DgGAgAC11All0
ORF1ab/nsp16185G185KGGAAAG11All0
ORF1ab/nsp16185G185delGGA---11AV.10.005051
ORF1ab/nsp16185G185delGGA---11AY.1000.000046
ORF1ab/nsp16185G185delGGA---11AY.1020.000027
ORF1ab/nsp16185G185GggAggG11AY.1020.000027
ORF1ab/nsp16185G185EgGagAa11AY.1030.000006
ORF1ab/nsp16185G185XGgaTga11AY.1030.000006
ORF1ab/nsp16185G185delGGA---11AY.1070.000466
ORF1ab/nsp16185G185delGGA---11AY.1100.000113
ORF1ab/nsp16185G185YGGATAT11AY.1130.000142
ORF1ab/nsp16185G185del1GGAAA-11AY.1190.000035
ORF1ab/nsp16185G185GggAggG11AY.1190.000035
ORF1ab/nsp16185G185delGGA---11AY.1190.000035
ORF1ab/nsp16185G185GggAggG11AY.140.000088
ORF1ab/nsp16185G185delGGA---11AY.190.00114
ORF1ab/nsp16185G185GggAggG11AY.230.00007
ORF1ab/nsp16185G185RGgaAga11AY.240.000431
ORF1ab/nsp16185G185delGGA---11AY.240.000431
ORF1ab/nsp16185G185GggAggG11AY.260.000028
ORF1ab/nsp16185G185del2GGA--N11AY.30.00001
ORF1ab/nsp16185G185GggAggG11AY.30.00001
ORF1ab/nsp16185G185delGGA---11AY.330.000067
ORF1ab/nsp16185G185GggAggG11AY.390.000025
ORF1ab/nsp16185G185delGGA---11AY.390.000025
ORF1ab/nsp16185G185GggAggC11AY.4.20.000022
ORF1ab/nsp16185G185delGGA---11AY.4.50.000107
ORF1ab/nsp16185G185del1ggAgg-11AY.430.000004
ORF1ab/nsp16185G185del1Gga-ga11AY.440.000006
ORF1ab/nsp16185G185GggAggG11AY.440.000006
ORF1ab/nsp16185G185delGGA---11AY.440.000006
ORF1ab/nsp16185G185XGgaTga11AY.440.000006
ORF1ab/nsp16185G185RGgaCga11AY.46.20.000635
ORF1ab/nsp16185G185RGgaAga11AY.46.60.000072
ORF1ab/nsp16185G185EgGagAa11AY.470.000031
ORF1ab/nsp16185G185delGGA---11AY.540.000095
ORF1ab/nsp16185G185delGGA---11AY.590.00053
ORF1ab/nsp16185G185GggAggG11AY.610.000105
ORF1ab/nsp16185G185delGGA---11AY.670.000464
ORF1ab/nsp16185G185delGGA---11AY.680.000274
ORF1ab/nsp16185G185GggAggG11AY.710.000475
ORF1ab/nsp16185G185GggAggG11AY.750.000056
ORF1ab/nsp16185G185RGgaAga11AY.840.000437
ORF1ab/nsp16185G185GggAggT11AY.920.000287
ORF1ab/nsp16185G185delGGA---11AY.950.000761
ORF1ab/nsp16185G185del1ggAgg-11B.10.000009
ORF1ab/nsp16185G185DgGAgAC11B.10.000009
ORF1ab/nsp16185G185RGgaAga11B.10.000009
ORF1ab/nsp16185G185AgGagCa11B.10.000009
ORF1ab/nsp16185G185VgGagTa11B.10.000009
ORF1ab/nsp16185G185XGgaTga11B.1.10.000018
ORF1ab/nsp16185G185EgGagAa11B.1.10.000018
ORF1ab/nsp16185G185EgGagAa11B.1.1.1280.007092
ORF1ab/nsp16185G185delGGA---11B.1.1.2070.001182
ORF1ab/nsp16185G185GggAggG11B.1.1.2140.000055
ORF1ab/nsp16185G185EgGagAa11B.1.1.2220.000204
ORF1ab/nsp16185G185RGgaCga11B.1.1.3060.000438
ORF1ab/nsp16185G185delGGA---11B.1.1.5170.006803
ORF1ab/nsp16185G185XGgaTga11B.1.1.70.000001
ORF1ab/nsp16185G185XGgaTga11B.1.1.700.000341
ORF1ab/nsp16185G185EgGagAa11B.1.1.80.003584
ORF1ab/nsp16185G185EgGagAa11B.1.1.980.018519
ORF1ab/nsp16185G185delGGA---11B.1.110.30.000718
ORF1ab/nsp16185G185SGgAAgT11B.1.1600.000031
ORF1ab/nsp16185G185RGgaAga11B.1.1600.000031
ORF1ab/nsp16185G185GggAggG11B.1.1770.000013
ORF1ab/nsp16185G185XGgaTga11B.1.1770.000013
ORF1ab/nsp16185G185delGGA---11B.1.177.500.004695
ORF1ab/nsp16185G185EgGagAa11B.1.177.530.002392
ORF1ab/nsp16185G185delGGA---11B.1.177.600.000218
ORF1ab/nsp16185G185delGGA---11B.1.177.680.015152
ORF1ab/nsp16185G185GggAggC11B.1.177.810.000189
ORF1ab/nsp16185G185delGGA---11B.1.1790.003759
ORF1ab/nsp16185G185del2GGA--N11B.1.20.000009
ORF1ab/nsp16185G185del1GGA-NN11B.1.20.000009
ORF1ab/nsp16185G185delGGA---11B.1.2180.005155
ORF1ab/nsp16185G185GggAggG11B.1.2400.000216
ORF1ab/nsp16185G185EgGagAa11B.1.2400.000216
ORF1ab/nsp16185G185RGgaCga11B.1.3110.000275
ORF1ab/nsp16185G185EgGagAa11B.1.3330.010526
ORF1ab/nsp16185G185EgGagAa11B.1.3360.002439
ORF1ab/nsp16185G185GggAggG11B.1.3500.002933
ORF1ab/nsp16185G185EgGagAa11B.1.3510.00003
ORF1ab/nsp16185G185EgGagAa11B.1.360.000146
ORF1ab/nsp16185G185GggAggG11B.1.360.000146
ORF1ab/nsp16185G185delGGA---11B.1.4090.000781
ORF1ab/nsp16185G185delGGA---11B.1.416.10.001563
ORF1ab/nsp16185G185GggAggG11B.1.416.10.001563
ORF1ab/nsp16185G185delGGA---11B.1.4270.00005
ORF1ab/nsp16185G185GggAggG11B.1.4290.000024
ORF1ab/nsp16185G185VgGagTa11B.1.4290.000024
ORF1ab/nsp16185G185GggAggG11B.1.4660.023256
ORF1ab/nsp16185G185RGgaAga11B.1.466.20.000391
ORF1ab/nsp16185G185GggAggG11B.1.466.20.000391
ORF1ab/nsp16185G185GggAggG11B.1.5170.000427
ORF1ab/nsp16185G185EgGagAa11B.1.5260.000024
ORF1ab/nsp16185G185GggAggT11B.1.5260.000024
ORF1ab/nsp16185G185delGGA---11B.1.5510.00129
ORF1ab/nsp16185G185delGGA---11B.1.5750.000303
ORF1ab/nsp16185G185EgGagAa11B.1.5760.000907
ORF1ab/nsp16185G185delGGA---11B.1.5950.000261
ORF1ab/nsp16185G185delGGA---11B.1.617.10.000129
ORF1ab/nsp16185G185GggAggT11B.1.617.10.000129
ORF1ab/nsp16185G185XGgaTga11B.1.617.10.000129
ORF1ab/nsp16185G185KGGAAAG11B.1.617.20.000004
ORF1ab/nsp16185G185del1Gga-ga11B.1.617.20.000004
ORF1ab/nsp16185G185RGgaAga11B.1.617.20.000004
ORF1ab/nsp16185G185XGgaTga11B.1.617.20.000004
ORF1ab/nsp16185G185delGGA---11B.1.6200.000946
ORF1ab/nsp16185G185RGgaCga11B.1.6360.006711
ORF1ab/nsp16185G185GggAggG11C.370.000116
ORF1ab/nsp16185G185VgGagTa11D.20.000075
ORF1ab/nsp16185G185GggAggG11D.20.000075
ORF1ab/nsp16185G185EgGagAa11P.1.140.000048