CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 182 & Codon = aaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16182K182NK6980NnonsynaaGaaT375637340.99414321202-21204

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16182K182NaaGaaT37343756All0.000714
ORF1ab/nsp16182K182NaaGaaT487487B.1.617.20.001834
ORF1ab/nsp16182K182NaaGaaT373373AY.30.00371
ORF1ab/nsp16182K182NaaGaaT345345AY.440.0021
ORF1ab/nsp16182K182NaaGaaT329329B.1.1.70.000295
ORF1ab/nsp16182K182NaaGaaT239242AY.1030.001484
ORF1ab/nsp16182K182NaaGaaT237239AY.40.000369
ORF1ab/nsp16182K182NaaGaaT190190B.1.4710.519126
ORF1ab/nsp16182K182NaaGaaT166166AY.740.019197
ORF1ab/nsp16182K182NaaGaaT152152AY.480.070698
ORF1ab/nsp16182K182NaaGaaT9494B.1.1.3180.028365
ORF1ab/nsp16182K182NaaGaaT8686B.1.20.000757
ORF1ab/nsp16182K182NaaGaaT6969AY.90.004664
ORF1ab/nsp16182K182NaaGaaT5454AY.1020.001432
ORF1ab/nsp16182K182NaaGaaT5050AY.430.000222
ORF1ab/nsp16182K182NaaGaaT5050P.10.000788
ORF1ab/nsp16182K182NaaGaaT4445AY.250.000265
ORF1ab/nsp16182K182NaaGaaT4242AY.160.015945
ORF1ab/nsp16182K182NaaGaaT4141B.1.1.390.020897
ORF1ab/nsp16182K182NaaGaaT3838AY.610.003982
ORF1ab/nsp16182K182NaaGaaT2830B.10.000256
ORF1ab/nsp16182K182NaaGaaT3030B.1.10.000544
ORF1ab/nsp16182K182NaaGaaT2626AY.1110.004762
ORF1ab/nsp16182K182NaaGaaT2525B.1.4260.025227
ORF1ab/nsp16182K182NaaGaaT2323B.1.2340.003035
ORF1ab/nsp16182K182NaaGaaT1818AY.200.0007
ORF1ab/nsp16182K182NaaGaaT1515AY.390.000371
ORF1ab/nsp16182K182NaaGaaT1515B.1.1.5190.000596
ORF1ab/nsp16182K182NaaGaaT1414B.1.360.002043
ORF1ab/nsp16182K182NaaGaaT1213R.10.00108
ORF1ab/nsp16182K182NaaGaaT1012AY.420.000402
ORF1ab/nsp16182K182NaaGaaT1212B.1.258.160.01964
ORF1ab/nsp16182K182NaaGaaT1111B.1.3510.000327
ORF1ab/nsp16182K182NaaGaaT1111B.1.6210.000974
ORF1ab/nsp16182K182NaaGaaT1111B.1.6370.000804
ORF1ab/nsp16182K182NaaGaaT1111N.10.186441
ORF1ab/nsp16182K182NaaGaaT99AY.9.20.000331
ORF1ab/nsp16182K182NaaGaaT88AY.290.000126
ORF1ab/nsp16182K182NaaGaaT88AY.470.000249
ORF1ab/nsp16182K182NaaGaaT88B.1.2430.000557
ORF1ab/nsp16182K182NaaGaaT77AY.1200.00026
ORF1ab/nsp16182K182NaaGaaT77AY.260.000198
ORF1ab/nsp16182K182NaaGaaT77AY.46.60.000505
ORF1ab/nsp16182K182NaaGaaT77AY.940.003099
ORF1ab/nsp16182K182NaaGaaT67B.1.1600.000187
ORF1ab/nsp16182K182NaaGaaT77B.1.1770.000092
ORF1ab/nsp16182K182NaaGaaT66AY.5.40.00166
ORF1ab/nsp16182K182NaaGaaT66B.1.1.4840.6
ORF1ab/nsp16182K182NaaGaaT56B.1.2210.000355
ORF1ab/nsp16182K182NaaGaaT66B.1.5170.002562
ORF1ab/nsp16182K182NaaGaaT66Z.10.017341
ORF1ab/nsp16182K182NaaGaaT55A0.001935
ORF1ab/nsp16182K182NaaGaaT55AY.1170.000423
ORF1ab/nsp16182K182NaaGaaT55AY.50.000103
ORF1ab/nsp16182K182NaaGaaT55B.1.1.2770.003794
ORF1ab/nsp16182K182NaaGaaT55B.1.1.2970.011186
ORF1ab/nsp16182K182NaaGaaT25D.20.00015
ORF1ab/nsp16182K182NaaGaaT55P.1.140.000239
ORF1ab/nsp16182K182NaaGaaT44AY.1180.000251
ORF1ab/nsp16182K182NaaGaaT44AY.120.001264
ORF1ab/nsp16182K182NaaGaaT44AY.230.000279
ORF1ab/nsp16182K182NaaGaaT44AY.3.10.000341
ORF1ab/nsp16182K182NaaGaaT44AY.690.000747
ORF1ab/nsp16182K182NaaGaaT44AY.7.20.002237
ORF1ab/nsp16182K182NaaGaaT44AY.840.00175
ORF1ab/nsp16182K182NaaGaaT44B.1.1.1700.004988
ORF1ab/nsp16182K182NaaGaaT44B.1.2400.000862
ORF1ab/nsp16182K182NaaGaaT44B.1.3990.007737
ORF1ab/nsp16182K182NaaGaaT44B.1.4290.000094
ORF1ab/nsp16182K182NaaGaaT44B.1.5880.00364
ORF1ab/nsp16182K182NaaGaaT33AD.20.000657
ORF1ab/nsp16182K182NaaGaaT33AY.1190.000106
ORF1ab/nsp16182K182NaaGaaT33AY.130.000483
ORF1ab/nsp16182K182NaaGaaT33AY.370.000948
ORF1ab/nsp16182K182NaaGaaT33AY.380.001498
ORF1ab/nsp16182K182NaaGaaT33AY.4.20.000065
ORF1ab/nsp16182K182NaaGaaT33AY.750.000168
ORF1ab/nsp16182K182NaaGaaT33AY.98.10.000145
ORF1ab/nsp16182K182NaaGaaT23B.1.1.250.001137
ORF1ab/nsp16182K182NaaGaaT33B.1.1.4320.003797
ORF1ab/nsp16182K182NaaGaaT33B.1.2580.0002
ORF1ab/nsp16182K182NaaGaaT33B.1.258.170.000312
ORF1ab/nsp16182K182NaaGaaT33B.1.4000.001287
ORF1ab/nsp16182K182NaaGaaT33B.1.4560.009804
ORF1ab/nsp16182K182NaaGaaT33B.1.4700.004213
ORF1ab/nsp16182K182NaaGaaT33B.1.6090.001438
ORF1ab/nsp16182K182NaaGaaT33B.1.617.10.000387
ORF1ab/nsp16182K182NaaGaaT33L.30.010638
ORF1ab/nsp16182K182NaaGaaT22AY.100.00106
ORF1ab/nsp16182K182NaaGaaT22AY.1050.001286
ORF1ab/nsp16182K182NaaGaaT22AY.1100.000225
ORF1ab/nsp16182K182NaaGaaT22AY.1130.000285
ORF1ab/nsp16182K182NaaGaaT22AY.1140.000462
ORF1ab/nsp16182K182NaaGaaT22AY.140.000176
ORF1ab/nsp16182K182NaaGaaT22AY.270.000129
ORF1ab/nsp16182K182NaaGaaT22AY.330.000134
ORF1ab/nsp16182K182NaaGaaT22AY.39.10.000079
ORF1ab/nsp16182K182NaaGaaT22AY.410.000588
ORF1ab/nsp16182K182NaaGaaT22AY.540.000191
ORF1ab/nsp16182K182NaaGaaT22AY.620.000871
ORF1ab/nsp16182K182NaaGaaT22AY.880.001768
ORF1ab/nsp16182K182NaaGaaT22AY.980.000158
ORF1ab/nsp16182K182NaaGaaT22AY.99.10.003106
ORF1ab/nsp16182K182NaaGaaT22AZ.20.001642
ORF1ab/nsp16182K182NaaGaaT22B.1.1.2220.000408
ORF1ab/nsp16182K182NaaGaaT22B.1.1.3050.007722
ORF1ab/nsp16182K182NaaGaaT22B.1.1.3060.000877
ORF1ab/nsp16182K182NaaGaaT22B.1.1.370.000386
ORF1ab/nsp16182K182NaaGaaT22B.1.1.4480.004065
ORF1ab/nsp16182K182NaaGaaT22B.1.1.500.001358
ORF1ab/nsp16182K182NaaGaaT22B.1.120.016
ORF1ab/nsp16182K182NaaGaaT22B.1.177.160.001329
ORF1ab/nsp16182K182NaaGaaT22B.1.177.330.003289
ORF1ab/nsp16182K182NaaGaaT22B.1.36.170.000988
ORF1ab/nsp16182K182NaaGaaT22B.1.3690.00057
ORF1ab/nsp16182K182NaaGaaT22B.1.4270.000101
ORF1ab/nsp16182K182NaaGaaT22B.1.438.10.000215
ORF1ab/nsp16182K182NaaGaaT22B.1.5070.022472
ORF1ab/nsp16182K182NaaGaaT22B.1.5250.000226
ORF1ab/nsp16182K182NaaGaaT22B.1.5580.009132
ORF1ab/nsp16182K182NaaGaaT22B.1.6100.007092
ORF1ab/nsp16182K182NaaGaaT22P.20.000373
ORF1ab/nsp16182K182NaaGaaT12Q.30.000145
ORF1ab/nsp16182K182NaaGaaT22Q.80.00033
ORF1ab/nsp16182K182NaaGaaT11AY.1000.000046
ORF1ab/nsp16182K182NaaGaaT11AY.1060.000335
ORF1ab/nsp16182K182NaaGaaT11AY.1070.000466
ORF1ab/nsp16182K182NaaGaaT11AY.1160.000287
ORF1ab/nsp16182K182NaaGaaT11AY.300.000396
ORF1ab/nsp16182K182NaaGaaT11AY.320.000532
ORF1ab/nsp16182K182NaaGaaT11AY.34.10.00051
ORF1ab/nsp16182K182NaaGaaT11AY.4.50.000107
ORF1ab/nsp16182K182NaaGaaT11AY.400.000964
ORF1ab/nsp16182K182NaaGaaT11AY.450.000122
ORF1ab/nsp16182K182NaaGaaT11AY.46.40.000165
ORF1ab/nsp16182K182NaaGaaT11AY.46.50.000198
ORF1ab/nsp16182K182NaaGaaT11AY.5.20.002463
ORF1ab/nsp16182K182NaaGaaT11AY.510.000909
ORF1ab/nsp16182K182NaaGaaT11AY.530.000288
ORF1ab/nsp16182K182NaaGaaT11AY.570.000656
ORF1ab/nsp16182K182NaaGaaT11AY.590.00053
ORF1ab/nsp16182K182NaaGaaT11AY.670.000464
ORF1ab/nsp16182K182NaaGaaT11AY.680.000274
ORF1ab/nsp16182K182NaaGaaT11AY.7.10.000113
ORF1ab/nsp16182K182NaaGaaT11AY.75.10.00018
ORF1ab/nsp16182K182NaaGaaT11AY.780.001541
ORF1ab/nsp16182K182NaaGaaT11AY.790.001211
ORF1ab/nsp16182K182NaaGaaT11AY.850.000427
ORF1ab/nsp16182K182NaaGaaT11B.1.1.1190.034483
ORF1ab/nsp16182K182NaaGaaT11B.1.1.1230.017857
ORF1ab/nsp16182K182NaaGaaT11B.1.1.1760.000439
ORF1ab/nsp16182K182NaaGaaT11B.1.1.1980.001468
ORF1ab/nsp16182K182NaaGaaT11B.1.1.2200.001859
ORF1ab/nsp16182K182NaaGaaT11B.1.1.2250.007194
ORF1ab/nsp16182K182NaaGaaT11B.1.1.2280.003049
ORF1ab/nsp16182K182NaaGaaT11B.1.1.2630.001558
ORF1ab/nsp16182K182NaaGaaT11B.1.1.2840.000107
ORF1ab/nsp16182K182NaaGaaT11B.1.1.2860.002899
ORF1ab/nsp16182K182NaaGaaT11B.1.1.3170.000412
ORF1ab/nsp16182K182NaaGaaT11B.1.1.3710.010417
ORF1ab/nsp16182K182NaaGaaT11B.1.1.3720.000689
ORF1ab/nsp16182K182NaaGaaT11B.1.1.4110.014706
ORF1ab/nsp16182K182NaaGaaT11B.1.1.5260.003546
ORF1ab/nsp16182K182NaaGaaT11B.1.177.320.00135
ORF1ab/nsp16182K182NaaGaaT11B.1.177.70.000165
ORF1ab/nsp16182K182NaaGaaT11B.1.177.770.000726
ORF1ab/nsp16182K182NaaGaaT11B.1.1790.003759
ORF1ab/nsp16182K182NaaGaaT11B.1.2100.002132
ORF1ab/nsp16182K182NaaGaaT11B.1.258.110.000396
ORF1ab/nsp16182K182NaaGaaT11B.1.3110.000275
ORF1ab/nsp16182K182NaaGaaT11B.1.3200.001245
ORF1ab/nsp16182K182NaaGaaT11B.1.3300.028571
ORF1ab/nsp16182K182NaaGaaT11B.1.3370.005587
ORF1ab/nsp16182K182NaaGaaT11B.1.3490.000715
ORF1ab/nsp16182K182NaaGaaT11B.1.351.20.000303
ORF1ab/nsp16182K182NaaGaaT11B.1.36.310.001751
ORF1ab/nsp16182K182NaaGaaT11B.1.36.360.000602
ORF1ab/nsp16182K182NaaGaaT11B.1.3670.000792
ORF1ab/nsp16182K182NaaGaaT11B.1.3850.010638
ORF1ab/nsp16182K182NaaGaaT11B.1.416.10.001563
ORF1ab/nsp16182K182NaaGaaT11B.1.466.20.000391
ORF1ab/nsp16182K182NaaGaaT11B.1.5260.000024
ORF1ab/nsp16182K182NaaGaaT11B.1.5330.009615
ORF1ab/nsp16182K182NaaGaaT11B.1.5960.000087
ORF1ab/nsp16182K182NaaGaaT11B.1.5970.00463
ORF1ab/nsp16182K182NaaGaaT11B.1.6200.000946
ORF1ab/nsp16182K182NaaGaaT11B.1.6270.00202
ORF1ab/nsp16182K182NaaGaaT11C.350.000774
ORF1ab/nsp16182K182NaaGaaT11C.370.000116
ORF1ab/nsp16182K182NaaGaaT11C.80.004464
ORF1ab/nsp16182K182NaaGaaT11N.50.001767
ORF1ab/nsp16182K182NaaGaaT11P.1.100.000269
ORF1ab/nsp16182K182NaaGaaT11P.1.120.000484

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.