CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : CodonNum = 168 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16168A168VA6966VnonsyngCtgTt25972597121160-21162

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16168A168VgCtgTt25972597All0.000497
ORF1ab/nsp16168A168VgCtgTt771771AY.40.0012
ORF1ab/nsp16168A168VgCtgTt608608AY.420.02446
ORF1ab/nsp16168A168VgCtgTt276276B.1.5700.811765
ORF1ab/nsp16168A168VgCtgTt232232B.1.3460.304063
ORF1ab/nsp16168A168VgCtgTt8282B.1.10.001488
ORF1ab/nsp16168A168VgCtgTt8181B.1.1.70.000073
ORF1ab/nsp16168A168VgCtgTt7878AY.260.002208
ORF1ab/nsp16168A168VgCtgTt7070AY.60.002879
ORF1ab/nsp16168A168VgCtgTt4646B.1.617.20.000173
ORF1ab/nsp16168A168VgCtgTt4343AY.1180.002694
ORF1ab/nsp16168A168VgCtgTt2424AY.3.10.002046
ORF1ab/nsp16168A168VgCtgTt2121B.1.1.3070.053165
ORF1ab/nsp16168A168VgCtgTt1818AY.250.000108
ORF1ab/nsp16168A168VgCtgTt1818B.10.000165
ORF1ab/nsp16168A168VgCtgTt1616AY.670.007428
ORF1ab/nsp16168A168VgCtgTt1515B.1.2580.000998
ORF1ab/nsp16168A168VgCtgTt1414AY.390.000346
ORF1ab/nsp16168A168VgCtgTt1414AY.50.000289
ORF1ab/nsp16168A168VgCtgTt1313B.1.1.5190.000516
ORF1ab/nsp16168A168VgCtgTt1212AY.430.000053
ORF1ab/nsp16168A168VgCtgTt1010AY.1000.00046
ORF1ab/nsp16168A168VgCtgTt1010B.1.5260.000235
ORF1ab/nsp16168A168VgCtgTt99AY.1030.000056
ORF1ab/nsp16168A168VgCtgTt88AY.30.00008
ORF1ab/nsp16168A168VgCtgTt77B.1.1.3040.019663
ORF1ab/nsp16168A168VgCtgTt77P.10.00011
ORF1ab/nsp16168A168VgCtgTt66AY.440.000037
ORF1ab/nsp16168A168VgCtgTt66B.1.1600.000187
ORF1ab/nsp16168A168VgCtgTt66B.1.20.000053
ORF1ab/nsp16168A168VgCtgTt55AY.1020.000133
ORF1ab/nsp16168A168VgCtgTt55AY.480.002326
ORF1ab/nsp16168A168VgCtgTt44B.1.5950.001044
ORF1ab/nsp16168A168VgCtgTt33AY.290.000047
ORF1ab/nsp16168A168VgCtgTt33AY.29.10.000662
ORF1ab/nsp16168A168VgCtgTt33B.1.177.520.005272
ORF1ab/nsp16168A168VgCtgTt22AY.1200.000074
ORF1ab/nsp16168A168VgCtgTt22AY.470.000062
ORF1ab/nsp16168A168VgCtgTt22AY.7.10.000225
ORF1ab/nsp16168A168VgCtgTt22AY.750.000112
ORF1ab/nsp16168A168VgCtgTt22AY.990.002099
ORF1ab/nsp16168A168VgCtgTt22B.1.36.160.002849
ORF1ab/nsp16168A168VgCtgTt22P.20.000373
ORF1ab/nsp16168A168VgCtgTt11A.10.000282
ORF1ab/nsp16168A168VgCtgTt11AD.20.000219
ORF1ab/nsp16168A168VgCtgTt11AH.20.012048
ORF1ab/nsp16168A168VgCtgTt11AY.1100.000113
ORF1ab/nsp16168A168VgCtgTt11AY.1140.000231
ORF1ab/nsp16168A168VgCtgTt11AY.1170.000085
ORF1ab/nsp16168A168VgCtgTt11AY.1190.000035
ORF1ab/nsp16168A168VgCtgTt11AY.200.000039
ORF1ab/nsp16168A168VgCtgTt11AY.34.10.00051
ORF1ab/nsp16168A168VgCtgTt11AY.46.50.000198
ORF1ab/nsp16168A168VgCtgTt11AY.46.60.000072
ORF1ab/nsp16168A168VgCtgTt11AY.5.30.000337
ORF1ab/nsp16168A168VgCtgTt11AY.610.000105
ORF1ab/nsp16168A168VgCtgTt11AY.870.000833
ORF1ab/nsp16168A168VgCtgTt11AY.930.000273
ORF1ab/nsp16168A168VgCtgTt11AY.980.000079
ORF1ab/nsp16168A168VgCtgTt11AY.99.20.000092
ORF1ab/nsp16168A168VgCtgTt11B.1.1.10.000327
ORF1ab/nsp16168A168VgCtgTt11B.1.1.1740.003378
ORF1ab/nsp16168A168VgCtgTt11B.1.1.2630.001558
ORF1ab/nsp16168A168VgCtgTt11B.1.1.3170.000412
ORF1ab/nsp16168A168VgCtgTt11B.1.1.390.00051
ORF1ab/nsp16168A168VgCtgTt11B.1.1.5260.003546
ORF1ab/nsp16168A168VgCtgTt11B.1.110.30.000718
ORF1ab/nsp16168A168VgCtgTt11B.1.1770.000013
ORF1ab/nsp16168A168VgCtgTt11B.1.177.570.000281
ORF1ab/nsp16168A168VgCtgTt11B.1.2430.00007
ORF1ab/nsp16168A168VgCtgTt11B.1.258.60.019608
ORF1ab/nsp16168A168VgCtgTt11B.1.3510.00003
ORF1ab/nsp16168A168VgCtgTt11B.1.4090.000781
ORF1ab/nsp16168A168VgCtgTt11B.1.4290.000024
ORF1ab/nsp16168A168VgCtgTt11B.1.5640.000426
ORF1ab/nsp16168A168VgCtgTt11B.1.5960.000087
ORF1ab/nsp16168A168VgCtgTt11B.1.621.10.000506
ORF1ab/nsp16168A168VgCtgTt11B.580.010204
ORF1ab/nsp16168A168VgCtgTt11C.160.00106
ORF1ab/nsp16168A168VgCtgTt11P.1.120.000484
ORF1ab/nsp16168A168VgCtgTt11P.1.140.000048
ORF1ab/nsp16168A168VgCtgTt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.